Wall clock time and date at job start Tue Mar 31 2020 14:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99826 * 2 1 4 4 H 1.48504 * 109.47262 * 239.99996 * 3 2 1 5 5 H 1.48504 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47292 * 119.99713 * 3 2 1 7 7 C 1.37875 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00156 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99807 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99599 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00581 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99726 * 180.02562 * 11 10 9 14 14 S 1.81398 * 109.47086 * 180.02562 * 13 11 10 15 15 O 1.42104 * 110.54565 * 68.37156 * 14 13 11 16 16 O 1.42098 * 110.54379 * 291.62339 * 14 13 11 17 17 C 1.76198 * 104.44833 * 179.97438 * 14 13 11 18 18 C 1.38238 * 119.99885 * 90.00087 * 17 14 13 19 19 C 1.38234 * 119.99693 * 180.02562 * 18 17 14 20 20 C 1.38234 * 120.00240 * 359.97438 * 19 18 17 21 21 N 1.48026 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.21793 * 119.99867 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99956 * 179.97438 * 21 20 19 24 24 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 25 25 C 1.38234 * 120.00048 * 270.01774 * 17 14 13 26 26 H 0.96995 * 120.00754 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47451 * 59.99541 * 9 7 2 28 28 H 1.08999 * 109.47226 * 299.99684 * 9 7 2 29 29 H 0.96995 * 119.99994 * 0.02562 * 10 9 7 30 30 H 1.09003 * 109.47365 * 59.99613 * 13 11 10 31 31 H 1.09007 * 109.46645 * 299.99792 * 13 11 10 32 32 H 1.07992 * 120.00302 * 0.02562 * 18 17 14 33 33 H 1.08004 * 120.00214 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.99939 * 179.72815 * 24 20 19 35 35 H 1.07999 * 120.00008 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5617 -5.1050 0.0020 13 6 2.7334 -6.0287 0.0016 14 16 1.8265 -7.5997 0.0015 15 8 1.1529 -7.7866 -1.2357 16 8 1.1520 -7.7862 1.2382 17 6 3.0844 -8.8335 0.0014 18 6 3.5778 -9.3175 1.1986 19 6 4.5651 -10.2851 1.1985 20 6 5.0586 -10.7690 0.0014 21 7 6.1161 -11.8047 0.0014 22 8 6.5511 -12.2308 1.0561 23 8 6.5506 -12.2314 -1.0535 24 6 4.5687 -10.2814 -1.1957 25 6 3.5782 -9.3171 -1.1957 26 1 -0.4851 0.8399 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 3.1569 -3.4353 0.0009 30 1 3.3601 -5.9705 0.8916 31 1 3.3601 -5.9712 -0.8884 32 1 3.1920 -8.9398 2.1339 33 1 4.9509 -10.6631 2.1338 34 1 4.9574 -10.6563 -2.1311 35 1 3.1932 -8.9384 -2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840562305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:46 Heat of formation + Delta-G solvation = -76.861670 kcal Electronic energy + Delta-G solvation = -24356.791661 eV Core-core repulsion = 20258.143064 eV Total energy + Delta-G solvation = -4098.648597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.72486 -40.01236 -39.27928 -37.39825 -37.09345 -36.19074 -34.59205 -32.93832 -32.60906 -32.14825 -30.68735 -27.42404 -27.09859 -23.95900 -23.38258 -22.87198 -20.45029 -20.00288 -19.57851 -19.18798 -18.29024 -18.06440 -17.49508 -16.64547 -16.58985 -15.87443 -15.81267 -15.69423 -15.15619 -14.90150 -14.56436 -14.46142 -14.19006 -14.03587 -13.14130 -13.12399 -12.44196 -12.29353 -12.16767 -12.14238 -12.07920 -11.92971 -11.84028 -11.63169 -11.54063 -11.31983 -11.08445 -10.99044 -10.67851 -10.49234 -10.11924 -9.78687 -9.57086 -8.93259 -8.22635 -6.29609 -4.38517 -1.05902 -0.41300 0.21527 0.56955 0.77024 2.32104 2.54649 2.73450 3.16582 3.20973 3.23220 3.32118 3.52449 3.74001 3.77509 3.77706 4.21837 4.22131 4.22205 4.52405 4.68883 4.72059 4.76462 4.93861 4.94378 5.03535 5.06702 5.13894 5.53029 5.82596 6.99530 7.02748 7.08061 7.30285 7.42971 7.78977 8.19998 8.44246 8.72566 9.28137 10.80289 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.002335 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.234831 B =11989.037594 C =12578.642923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.244 3.756 10 N -0.690 5.690 11 C 0.523 3.477 12 O -0.548 6.548 13 C -0.648 4.648 14 S 2.532 3.468 15 O -0.908 6.908 16 O -0.908 6.908 17 C -0.626 4.626 18 C -0.020 4.020 19 C -0.076 4.076 20 C 0.002 3.998 21 N 0.020 4.980 22 O -0.148 6.148 23 O -0.148 6.148 24 C -0.076 4.076 25 C -0.020 4.020 26 H 0.269 0.731 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.396 0.604 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.176 -19.188 0.006 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.082 0.918 9 C 0.124 3.876 10 N -0.337 5.337 11 C 0.304 3.696 12 O -0.428 6.428 13 C -0.778 4.778 14 S 2.705 3.295 15 O -0.905 6.905 16 O -0.905 6.905 17 C -0.709 4.709 18 C -0.039 4.039 19 C -0.096 4.096 20 C -0.080 4.080 21 N 0.542 4.458 22 O -0.365 6.365 23 O -0.366 6.366 24 C -0.096 4.096 25 C -0.039 4.039 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.230 0.770 30 H 0.179 0.821 31 H 0.179 0.821 32 H 0.187 0.813 33 H 0.182 0.818 34 H 0.182 0.818 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.791 -18.823 0.005 21.217 hybrid contribution 2.291 0.676 -0.001 2.389 sum 12.082 -18.147 0.004 21.801 Atomic orbital electron populations 1.69947 1.06126 1.27746 1.48065 1.24950 0.94955 0.99541 0.94446 0.86432 0.79404 0.82104 0.78718 1.20017 1.20948 1.20009 1.21119 0.93249 0.90199 1.54304 0.91790 1.19337 0.88213 0.81486 0.98558 1.46410 1.11838 1.05380 1.70106 1.18969 0.87623 0.84119 0.78867 1.90841 1.15679 1.84283 1.52009 1.30766 1.14933 1.18281 1.13812 1.04975 0.73995 0.75073 0.75503 1.93590 1.68180 1.84213 1.44556 1.93589 1.68129 1.84219 1.44594 1.31738 1.20059 1.19844 0.99222 1.21137 0.91763 0.92841 0.98203 1.21249 0.95372 0.95330 0.97618 1.21493 0.94284 0.94917 0.97352 1.43674 1.00743 1.00690 1.00689 1.94570 1.60854 1.60584 1.20540 1.94571 1.60894 1.60550 1.20539 1.21250 0.95369 0.95331 0.97618 1.21137 0.91726 0.92870 0.98203 0.92141 0.94745 0.94733 0.77021 0.82065 0.82075 0.81324 0.81777 0.81776 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.92 13.29 55.43 0.74 -24.18 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -14.00 9.28 -34.44 -0.32 -14.32 16 8 H 0.06 1.49 7.60 -52.49 -0.40 1.10 16 9 C 0.24 6.02 5.43 -5.19 -0.03 5.99 16 10 N -0.69 -12.85 5.55 -61.47 -0.34 -13.19 16 11 C 0.52 9.09 7.85 -10.98 -0.09 9.01 16 12 O -0.55 -12.08 15.86 5.55 0.09 -11.99 16 13 C -0.65 -6.37 6.46 36.01 0.23 -6.14 16 14 S 2.53 29.01 4.29 -107.50 -0.46 28.55 16 15 O -0.91 -13.21 17.13 -57.55 -0.99 -14.20 16 16 O -0.91 -13.21 17.13 -57.55 -0.99 -14.20 16 17 C -0.63 -4.89 5.66 -39.58 -0.22 -5.11 16 18 C -0.02 -0.14 9.47 -39.58 -0.37 -0.51 16 19 C -0.08 -0.51 9.56 -39.58 -0.38 -0.89 16 20 C 0.00 0.01 6.85 -79.95 -0.55 -0.53 16 21 N 0.02 0.20 4.45 33.96 0.15 0.35 16 22 O -0.15 -1.57 18.45 -29.46 -0.54 -2.11 16 23 O -0.15 -1.57 18.45 -29.46 -0.54 -2.12 16 24 C -0.08 -0.51 9.56 -39.58 -0.38 -0.89 16 25 C -0.02 -0.14 9.47 -39.58 -0.37 -0.51 16 26 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.40 5.91 8.32 -40.82 -0.34 5.57 16 30 H 0.16 0.94 8.14 -51.92 -0.42 0.51 16 31 H 0.16 0.94 8.14 -51.92 -0.42 0.51 16 32 H 0.17 0.82 7.57 -52.49 -0.40 0.42 16 33 H 0.16 0.79 7.61 -52.48 -0.40 0.39 16 34 H 0.16 0.79 7.61 -52.48 -0.40 0.39 16 35 H 0.17 0.82 7.57 -52.49 -0.40 0.42 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -36.53 337.66 -8.55 -45.08 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.16 Total: 0.34 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.58 Total: -12.27 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.55 Total: -37.02 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -2.97 Total: -44.62 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 29.01 SS G_CDS: -0.46 Total: 28.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.53 -8.55 -45.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840562305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.780 kcal (2) G-P(sol) polarization free energy of solvation -36.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds