Wall clock time and date at job start Tue Mar 31 2020 14:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99826 * 2 1 4 4 H 1.48504 * 109.47262 * 239.99996 * 3 2 1 5 5 H 1.48504 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47292 * 119.99713 * 3 2 1 7 7 C 1.37875 * 120.00497 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00156 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99807 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99599 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00581 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99726 * 180.02562 * 11 10 9 14 14 S 1.81398 * 109.47086 * 180.02562 * 13 11 10 15 15 O 1.42104 * 110.54565 * 68.37156 * 14 13 11 16 16 O 1.42098 * 110.54379 * 291.62339 * 14 13 11 17 17 C 1.76198 * 104.44833 * 179.97438 * 14 13 11 18 18 C 1.38238 * 119.99885 * 90.00087 * 17 14 13 19 19 C 1.38234 * 119.99693 * 180.02562 * 18 17 14 20 20 C 1.38234 * 120.00240 * 359.97438 * 19 18 17 21 21 N 1.48026 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.21793 * 119.99867 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99956 * 179.97438 * 21 20 19 24 24 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 25 25 C 1.38234 * 120.00048 * 270.01774 * 17 14 13 26 26 H 0.96995 * 120.00754 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47451 * 59.99541 * 9 7 2 28 28 H 1.08999 * 109.47226 * 299.99684 * 9 7 2 29 29 H 0.96995 * 119.99994 * 0.02562 * 10 9 7 30 30 H 1.09003 * 109.47365 * 59.99613 * 13 11 10 31 31 H 1.09007 * 109.46645 * 299.99792 * 13 11 10 32 32 H 1.07992 * 120.00302 * 0.02562 * 18 17 14 33 33 H 1.08004 * 120.00214 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.99939 * 179.72815 * 24 20 19 35 35 H 1.07999 * 120.00008 * 0.02562 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5617 -5.1050 0.0020 13 6 2.7334 -6.0287 0.0016 14 16 1.8265 -7.5997 0.0015 15 8 1.1529 -7.7866 -1.2357 16 8 1.1520 -7.7862 1.2382 17 6 3.0844 -8.8335 0.0014 18 6 3.5778 -9.3175 1.1986 19 6 4.5651 -10.2851 1.1985 20 6 5.0586 -10.7690 0.0014 21 7 6.1161 -11.8047 0.0014 22 8 6.5511 -12.2308 1.0561 23 8 6.5506 -12.2314 -1.0535 24 6 4.5687 -10.2814 -1.1957 25 6 3.5782 -9.3171 -1.1957 26 1 -0.4851 0.8399 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 3.1569 -3.4353 0.0009 30 1 3.3601 -5.9705 0.8916 31 1 3.3601 -5.9712 -0.8884 32 1 3.1920 -8.9398 2.1339 33 1 4.9509 -10.6631 2.1338 34 1 4.9574 -10.6563 -2.1311 35 1 3.1932 -8.9384 -2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840562305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:45 Heat of formation + Delta-G solvation = -105.582770 kcal Electronic energy + Delta-G solvation = -24358.037102 eV Core-core repulsion = 20258.143064 eV Total energy + Delta-G solvation = -4099.894038 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.42599 -40.80463 -40.56779 -38.39357 -37.83677 -37.18747 -36.34775 -34.49446 -33.54200 -32.66879 -31.87107 -28.95419 -28.07813 -24.81728 -24.47949 -23.99431 -21.93429 -20.63562 -20.48705 -19.90125 -19.35392 -18.86073 -18.76333 -17.82133 -17.49686 -17.48192 -16.78049 -16.71567 -16.19467 -16.02260 -15.89168 -15.06854 -15.03979 -14.71595 -14.56942 -14.44551 -14.04901 -13.55051 -13.30183 -13.27393 -13.02254 -12.90814 -12.77186 -12.68867 -12.61716 -12.41257 -12.37616 -12.26122 -12.06159 -11.54937 -11.39829 -11.20496 -10.82746 -10.61474 -10.01952 -8.30131 -6.47157 -1.73418 -1.29776 -0.28239 -0.13715 0.12185 1.38268 1.44458 1.47814 1.55923 1.61115 1.80500 2.17190 2.40627 2.78153 2.84302 3.05459 3.15878 3.28149 3.51879 3.61637 3.68506 3.96956 4.09894 4.21606 4.22722 4.40628 4.51066 4.63358 4.93197 5.05449 5.19880 5.19997 5.35281 5.56533 5.80480 6.29949 6.55624 6.63795 7.14635 7.29672 8.81595 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.002335 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.234831 B =11989.037594 C =12578.642923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.257 3.743 10 N -0.686 5.686 11 C 0.513 3.487 12 O -0.602 6.602 13 C -0.628 4.628 14 S 2.532 3.468 15 O -0.950 6.950 16 O -0.950 6.950 17 C -0.614 4.614 18 C -0.018 4.018 19 C -0.071 4.071 20 C -0.009 4.009 21 N 0.021 4.979 22 O -0.163 6.163 23 O -0.163 6.163 24 C -0.071 4.071 25 C -0.018 4.018 26 H 0.269 0.731 27 H -0.004 1.004 28 H -0.004 1.004 29 H 0.418 0.582 30 H 0.213 0.787 31 H 0.212 0.788 32 H 0.188 0.812 33 H 0.182 0.818 34 H 0.182 0.818 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.408 -19.235 0.006 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.107 0.893 9 C 0.134 3.866 10 N -0.335 5.335 11 C 0.299 3.701 12 O -0.486 6.486 13 C -0.759 4.759 14 S 2.711 3.289 15 O -0.948 6.948 16 O -0.947 6.947 17 C -0.701 4.701 18 C -0.038 4.038 19 C -0.091 4.091 20 C -0.091 4.091 21 N 0.540 4.460 22 O -0.379 6.379 23 O -0.379 6.379 24 C -0.091 4.091 25 C -0.037 4.037 26 H 0.078 0.922 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.255 0.745 30 H 0.230 0.770 31 H 0.230 0.770 32 H 0.205 0.795 33 H 0.200 0.800 34 H 0.200 0.800 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 13.050 -18.891 0.006 22.960 hybrid contribution 1.293 0.596 -0.001 1.424 sum 14.343 -18.296 0.004 23.248 Atomic orbital electron populations 1.70118 1.08284 1.28722 1.49705 1.26051 0.95737 1.03917 0.93886 0.85219 0.77885 0.76657 0.79526 1.18603 1.21460 1.18592 1.21573 0.94494 0.90270 1.53182 0.89286 1.18749 0.88800 0.84021 0.95008 1.46051 1.11976 1.04785 1.70716 1.20034 0.88219 0.85197 0.76694 1.90827 1.18878 1.85254 1.53652 1.30655 1.13415 1.12929 1.18865 1.04388 0.74673 0.75880 0.73924 1.93544 1.70423 1.85071 1.45713 1.93543 1.70374 1.85078 1.45750 1.31078 1.19339 1.19251 1.00391 1.21376 0.91309 0.92523 0.98545 1.21461 0.94865 0.94777 0.97997 1.21697 0.94124 0.94802 0.98505 1.43936 1.00898 1.00827 1.00352 1.94561 1.61481 1.61211 1.20616 1.94562 1.61523 1.61179 1.20615 1.21462 0.94864 0.94772 0.97997 1.21376 0.91273 0.92554 0.98545 0.92217 0.98630 0.98619 0.74480 0.77033 0.77041 0.79519 0.80024 0.80021 0.79519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.98 40.16 29.54 68.60 2.03 42.18 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.56 -28.21 9.28 25.60 0.24 -27.97 16 8 H 0.09 3.95 7.60 -2.91 -0.02 3.92 16 9 C 0.26 13.09 5.43 85.63 0.46 13.56 16 10 N -0.69 -24.98 5.55 -466.77 -2.59 -27.57 16 11 C 0.51 17.46 7.85 87.66 0.69 18.15 16 12 O -0.60 -27.52 15.86 -3.04 -0.05 -27.57 16 13 C -0.63 -10.19 6.46 71.24 0.46 -9.73 16 14 S 2.53 54.35 4.29 -56.49 -0.24 54.11 16 15 O -0.95 -27.37 17.13 -127.64 -2.19 -29.55 16 16 O -0.95 -27.37 17.13 -127.64 -2.19 -29.56 16 17 C -0.61 -7.81 5.66 22.27 0.13 -7.68 16 18 C -0.02 -0.19 9.47 22.27 0.21 0.02 16 19 C -0.07 -0.74 9.56 22.27 0.21 -0.53 16 20 C -0.01 -0.12 6.85 36.37 0.25 0.13 16 21 N 0.02 0.38 4.45 -46.46 -0.21 0.17 16 22 O -0.16 -3.23 18.45 18.89 0.35 -2.88 16 23 O -0.16 -3.24 18.45 18.89 0.35 -2.89 16 24 C -0.07 -0.74 9.56 22.27 0.21 -0.53 16 25 C -0.02 -0.19 9.47 22.27 0.21 0.02 16 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.42 11.31 8.32 -92.71 -0.77 10.54 16 30 H 0.21 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.21 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.19 1.23 7.57 -2.91 -0.02 1.20 16 33 H 0.18 1.21 7.61 -2.91 -0.02 1.19 16 34 H 0.18 1.21 7.61 -2.91 -0.02 1.19 16 35 H 0.19 1.23 7.57 -2.91 -0.02 1.20 16 Total: -1.00 -85.38 337.66 -0.53 -85.91 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.39 Total: 5.39 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.54 Total: -13.89 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -2.51 Total: -81.24 kcal Atomic # 8 Polarization: -88.73 SS G_CDS: -3.72 Total: -92.45 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.24 Total: 54.11 kcal Total: -85.38 -0.53 -85.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840562305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.674 kcal (2) G-P(sol) polarization free energy of solvation -85.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds