Wall clock time and date at job start Tue Mar 31 2020 15:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47230 * 300.00293 * 3 2 1 6 6 H 1.48502 * 109.47083 * 60.00098 * 3 2 1 7 7 C 1.37871 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99955 * 171.96374 * 7 2 1 9 9 C 1.50702 * 120.00156 * 351.96313 * 7 2 1 10 10 C 1.52997 * 115.55028 * 84.76528 * 9 7 2 11 11 S 1.81399 * 109.47192 * 65.27904 * 10 9 7 12 12 O 1.42105 * 110.54172 * 62.99142 * 11 10 9 13 13 O 1.42094 * 110.54190 * 286.23629 * 11 10 9 14 14 O 1.52197 * 104.44767 * 174.61330 * 11 10 9 15 15 C 1.35670 * 114.00126 * 75.00192 * 14 11 10 16 16 C 1.39176 * 119.86028 * 89.99571 * 15 14 11 17 17 C 1.36497 * 120.31645 * 179.72722 * 16 15 14 18 18 C 1.40108 * 120.03552 * 0.27456 * 17 16 15 19 19 C 1.46674 * 120.14149 * 179.97438 * 18 17 16 20 20 O 1.21320 * 120.00199 * 180.02562 * 19 18 17 21 21 C 1.40322 * 119.72062 * 0.02562 * 18 17 16 22 22 F 1.35099 * 120.16092 * 180.02562 * 21 18 17 23 23 C 1.38014 * 119.68465 * 359.97438 * 21 18 17 24 24 C 1.53001 * 117.49670 * 230.43478 * 9 7 2 25 25 C 1.53007 * 117.49579 * 299.08986 * 9 7 2 26 26 H 0.97010 * 119.99765 * 5.01979 * 1 2 3 27 27 H 1.08997 * 109.46815 * 305.27478 * 10 9 7 28 28 H 1.09005 * 109.46954 * 185.27986 * 10 9 7 29 29 H 1.07992 * 119.84102 * 0.02562 * 16 15 14 30 30 H 1.08004 * 119.98189 * 180.25978 * 17 16 15 31 31 H 1.08003 * 120.00142 * 0.02562 * 19 18 17 32 32 H 1.07998 * 120.02023 * 180.02562 * 23 21 18 33 33 H 1.09004 * 117.50116 * 214.99911 * 24 9 7 34 34 H 1.09003 * 117.50290 * 0.02562 * 24 9 7 35 35 H 1.08997 * 117.49735 * 359.97438 * 25 9 7 36 36 H 1.08998 * 117.49335 * 144.97436 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0765 -1.1986 -0.1313 9 6 1.2620 -2.4928 0.1814 10 6 0.6619 -3.0937 -1.0913 11 16 1.9972 -3.5694 -2.2232 12 8 2.8068 -4.5822 -1.6417 13 8 2.5793 -2.4184 -2.8193 14 8 1.2884 -4.2700 -3.3735 15 6 0.6390 -3.4281 -4.2163 16 6 1.3048 -2.9023 -5.3196 17 6 0.6588 -2.0588 -6.1766 18 6 -0.6791 -1.7135 -5.9451 19 6 -1.3754 -0.8069 -6.8642 20 8 -2.5338 -0.5092 -6.6611 21 6 -1.3500 -2.2377 -4.8297 22 9 -2.6403 -1.9111 -4.5983 23 6 -0.6857 -3.0896 -3.9707 24 6 1.7856 -3.4633 1.2420 25 6 0.4889 -2.6877 1.4873 26 1 -0.4850 0.8369 -0.0735 27 1 0.0215 -2.3558 -1.5745 28 1 0.0724 -3.9739 -0.8345 29 1 2.3360 -3.1667 -5.5012 30 1 1.1795 -1.6573 -7.0334 31 1 -0.8568 -0.4043 -7.7218 32 1 -1.1969 -3.4965 -3.1108 33 1 1.7026 -4.5299 1.0332 34 1 2.6668 -3.1622 1.8085 35 1 0.5177 -1.8767 2.2150 36 1 -0.4474 -3.2436 1.4396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845961338.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:22 Heat of formation + Delta-G solvation = -124.257092 kcal Electronic energy + Delta-G solvation = -26445.555087 eV Core-core repulsion = 22324.931308 eV Total energy + Delta-G solvation = -4120.623779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.06382 -41.10297 -39.32298 -37.58796 -36.86717 -36.58520 -35.48485 -32.12227 -31.56083 -30.74590 -28.43318 -25.58838 -25.28179 -23.41338 -21.99279 -21.29868 -20.72822 -19.53612 -18.33237 -17.75705 -17.37329 -17.09537 -16.46226 -16.23173 -15.80107 -15.58836 -15.31198 -14.84598 -14.60784 -14.36499 -14.20296 -14.10316 -13.89874 -13.26716 -13.23918 -12.67646 -12.48898 -12.16136 -11.95413 -11.87741 -11.65033 -11.55726 -11.46545 -11.13906 -11.01540 -10.71839 -10.54447 -10.21682 -10.04468 -9.79450 -9.39844 -9.04896 -9.01709 -8.65206 -8.22439 -6.21374 -4.32793 -0.09109 0.80590 0.87601 2.09369 2.49875 3.23391 3.24757 3.31996 3.38167 3.77879 3.95633 4.13645 4.30598 4.32156 4.38684 4.55400 4.74956 4.92918 4.99437 5.04459 5.10540 5.40243 5.55854 5.60645 5.70341 5.75026 5.80381 5.96532 6.12724 6.26147 6.46594 6.48411 6.64258 6.89065 7.11727 7.15043 7.31387 7.73307 8.10667 8.73566 9.39221 10.86111 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.005615 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.568719 B = 4985.476794 C = 6022.403739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.083 3.917 3 Si 0.892 3.108 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.071 0.929 9 C 0.043 3.957 10 C -0.575 4.575 11 S 2.582 3.418 12 O -0.936 6.936 13 O -0.936 6.936 14 O -0.681 6.681 15 C 0.152 3.848 16 C -0.122 4.122 17 C -0.023 4.023 18 C -0.225 4.225 19 C 0.382 3.618 20 O -0.446 6.446 21 C 0.184 3.816 22 F -0.107 7.107 23 C -0.183 4.183 24 C -0.208 4.208 25 C -0.138 4.138 26 H 0.264 0.736 27 H 0.138 0.862 28 H 0.106 0.894 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.117 0.883 32 H 0.160 0.840 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -5.220 -12.556 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.123 4.123 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.040 3.960 10 C -0.706 4.706 11 S 2.682 3.318 12 O -0.934 6.934 13 O -0.935 6.935 14 O -0.639 6.639 15 C 0.109 3.891 16 C -0.142 4.142 17 C -0.041 4.041 18 C -0.228 4.228 19 C 0.239 3.761 20 O -0.318 6.318 21 C 0.163 3.837 22 F -0.085 7.085 23 C -0.204 4.204 24 C -0.245 4.245 25 C -0.177 4.177 26 H 0.074 0.926 27 H 0.157 0.843 28 H 0.124 0.876 29 H 0.170 0.830 30 H 0.175 0.825 31 H 0.133 0.867 32 H 0.178 0.822 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.265 -5.254 -12.701 13.803 hybrid contribution -0.272 0.871 0.725 1.165 sum -1.536 -4.383 -11.977 12.846 Atomic orbital electron populations 1.69974 1.06056 1.27279 1.47360 1.24963 0.94807 0.99289 0.93239 0.86514 0.80725 0.83113 0.77741 1.19160 1.20615 1.20792 1.20547 0.93812 0.88406 1.52704 0.91120 1.18252 0.99242 0.94520 0.83956 1.30267 1.16562 1.09135 1.14659 1.05923 0.77193 0.73837 0.74871 1.93557 1.64792 1.58257 1.76784 1.93598 1.75468 1.51720 1.72704 1.85774 1.73215 1.53611 1.51291 1.17927 0.90288 0.89848 0.91030 1.21064 1.01718 0.97834 0.93609 1.20871 0.91548 0.93450 0.98261 1.21256 0.96916 1.05532 0.99112 1.23861 0.87737 0.77623 0.86872 1.90619 1.18678 1.50723 1.71787 1.17422 0.79352 0.93738 0.93154 1.91627 1.32959 1.90204 1.93680 1.21327 0.94409 1.01633 1.03016 1.23238 0.98813 0.96063 1.06428 1.22567 0.92665 1.01024 1.01485 0.92635 0.84350 0.87574 0.82957 0.82530 0.86735 0.82198 0.90555 0.89279 0.89403 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.41 12.99 55.43 0.72 -22.69 16 2 C 0.08 2.19 5.38 -17.82 -0.10 2.09 16 3 Si 0.89 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.64 8.15 -34.44 -0.28 -13.92 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 C 0.04 1.00 1.32 -155.66 -0.21 0.80 16 10 C -0.57 -11.71 5.12 37.16 0.19 -11.52 16 11 S 2.58 51.36 4.91 -107.50 -0.53 50.83 16 12 O -0.94 -20.43 18.09 -67.04 -1.21 -21.64 16 13 O -0.94 -20.37 15.88 -67.04 -1.06 -21.44 16 14 O -0.68 -11.29 10.03 -51.04 -0.51 -11.80 16 15 C 0.15 2.29 4.81 -38.98 -0.19 2.10 16 16 C -0.12 -1.52 8.96 -39.86 -0.36 -1.88 16 17 C -0.02 -0.22 9.73 -39.51 -0.38 -0.61 16 18 C -0.23 -2.62 5.88 -105.01 -0.62 -3.24 16 19 C 0.38 3.89 11.43 34.14 0.39 4.28 16 20 O -0.45 -6.54 16.16 5.52 0.09 -6.45 16 21 C 0.18 2.63 7.29 -38.88 -0.28 2.35 16 22 F -0.11 -1.70 15.55 2.25 0.04 -1.67 16 23 C -0.18 -2.65 8.48 -39.41 -0.33 -2.99 16 24 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 25 C -0.14 -3.05 9.50 -26.69 -0.25 -3.31 16 26 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 27 H 0.14 2.89 6.95 -51.93 -0.36 2.53 16 28 H 0.11 1.80 8.09 -51.92 -0.42 1.38 16 29 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 31 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 32 H 0.16 2.08 7.55 -52.49 -0.40 1.69 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 35 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -33.44 335.98 -8.80 -42.24 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -3.68 Total: 2.24 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -2.68 Total: -30.52 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.72 Total: -22.69 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -2.70 Total: -61.34 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 51.36 SS G_CDS: -0.53 Total: 50.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.44 -8.80 -42.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845961338.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.013 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds