Wall clock time and date at job start Tue Mar 31 2020 15:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00111 * 2 1 4 4 H 1.48497 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47230 * 300.00293 * 3 2 1 6 6 H 1.48502 * 109.47083 * 60.00098 * 3 2 1 7 7 C 1.37871 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99955 * 171.96374 * 7 2 1 9 9 C 1.50702 * 120.00156 * 351.96313 * 7 2 1 10 10 C 1.52997 * 115.55028 * 84.76528 * 9 7 2 11 11 S 1.81399 * 109.47192 * 65.27904 * 10 9 7 12 12 O 1.42105 * 110.54172 * 62.99142 * 11 10 9 13 13 O 1.42094 * 110.54190 * 286.23629 * 11 10 9 14 14 O 1.52197 * 104.44767 * 174.61330 * 11 10 9 15 15 C 1.35670 * 114.00126 * 75.00192 * 14 11 10 16 16 C 1.39176 * 119.86028 * 89.99571 * 15 14 11 17 17 C 1.36497 * 120.31645 * 179.72722 * 16 15 14 18 18 C 1.40108 * 120.03552 * 0.27456 * 17 16 15 19 19 C 1.46674 * 120.14149 * 179.97438 * 18 17 16 20 20 O 1.21320 * 120.00199 * 180.02562 * 19 18 17 21 21 C 1.40322 * 119.72062 * 0.02562 * 18 17 16 22 22 F 1.35099 * 120.16092 * 180.02562 * 21 18 17 23 23 C 1.38014 * 119.68465 * 359.97438 * 21 18 17 24 24 C 1.53001 * 117.49670 * 230.43478 * 9 7 2 25 25 C 1.53007 * 117.49579 * 299.08986 * 9 7 2 26 26 H 0.97010 * 119.99765 * 5.01979 * 1 2 3 27 27 H 1.08997 * 109.46815 * 305.27478 * 10 9 7 28 28 H 1.09005 * 109.46954 * 185.27986 * 10 9 7 29 29 H 1.07992 * 119.84102 * 0.02562 * 16 15 14 30 30 H 1.08004 * 119.98189 * 180.25978 * 17 16 15 31 31 H 1.08003 * 120.00142 * 0.02562 * 19 18 17 32 32 H 1.07998 * 120.02023 * 180.02562 * 23 21 18 33 33 H 1.09004 * 117.50116 * 214.99911 * 24 9 7 34 34 H 1.09003 * 117.50290 * 0.02562 * 24 9 7 35 35 H 1.08997 * 117.49735 * 359.97438 * 25 9 7 36 36 H 1.08998 * 117.49335 * 144.97436 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0765 -1.1986 -0.1313 9 6 1.2620 -2.4928 0.1814 10 6 0.6619 -3.0937 -1.0913 11 16 1.9972 -3.5694 -2.2232 12 8 2.8068 -4.5822 -1.6417 13 8 2.5793 -2.4184 -2.8193 14 8 1.2884 -4.2700 -3.3735 15 6 0.6390 -3.4281 -4.2163 16 6 1.3048 -2.9023 -5.3196 17 6 0.6588 -2.0588 -6.1766 18 6 -0.6791 -1.7135 -5.9451 19 6 -1.3754 -0.8069 -6.8642 20 8 -2.5338 -0.5092 -6.6611 21 6 -1.3500 -2.2377 -4.8297 22 9 -2.6403 -1.9111 -4.5983 23 6 -0.6857 -3.0896 -3.9707 24 6 1.7856 -3.4633 1.2420 25 6 0.4889 -2.6877 1.4873 26 1 -0.4850 0.8369 -0.0735 27 1 0.0215 -2.3558 -1.5745 28 1 0.0724 -3.9739 -0.8345 29 1 2.3360 -3.1667 -5.5012 30 1 1.1795 -1.6573 -7.0334 31 1 -0.8568 -0.4043 -7.7218 32 1 -1.1969 -3.4965 -3.1108 33 1 1.7026 -4.5299 1.0332 34 1 2.6668 -3.1622 1.8085 35 1 0.5177 -1.8767 2.2150 36 1 -0.4474 -3.2436 1.4396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845961338.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:22 Heat of formation + Delta-G solvation = -146.205556 kcal Electronic energy + Delta-G solvation = -26446.506844 eV Core-core repulsion = 22324.931308 eV Total energy + Delta-G solvation = -4121.575536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.18802 -42.29488 -40.28874 -38.70714 -38.55602 -38.19421 -37.11297 -34.10761 -32.56039 -31.73378 -30.05222 -27.55064 -26.31947 -24.40305 -23.09351 -22.97234 -21.97926 -21.22762 -19.69630 -18.99278 -18.80497 -18.27237 -17.94918 -17.40867 -17.07571 -16.92449 -16.69367 -16.26116 -16.13634 -15.74219 -15.29384 -15.20631 -15.18621 -14.95697 -14.31968 -13.96508 -13.85061 -13.77468 -13.62575 -13.28172 -13.19875 -13.04730 -12.98757 -12.87640 -12.61753 -12.47159 -12.29387 -11.97455 -11.59943 -10.91063 -10.90806 -10.58903 -10.40065 -10.09393 -9.95184 -8.20925 -6.36274 -1.25600 -0.50378 -0.11049 1.09428 1.25419 1.37091 1.41133 1.51909 2.32791 2.38432 2.57908 2.81772 2.96417 3.08276 3.14346 3.32241 3.38882 3.48145 3.69871 3.86314 4.01569 4.15078 4.21393 4.44002 4.54193 4.62978 4.71288 4.74164 4.75719 4.83197 4.94397 4.95205 5.16345 5.38818 5.47744 5.55509 5.69589 6.18613 6.38912 6.70849 7.36911 8.85765 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.005615 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.568719 B = 4985.476794 C = 6022.403739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.043 3.957 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.011 3.989 10 C -0.578 4.578 11 S 2.604 3.396 12 O -0.960 6.960 13 O -0.961 6.961 14 O -0.670 6.670 15 C 0.111 3.889 16 C -0.128 4.128 17 C 0.002 3.998 18 C -0.223 4.223 19 C 0.391 3.609 20 O -0.496 6.496 21 C 0.150 3.850 22 F -0.125 7.125 23 C -0.194 4.194 24 C -0.196 4.196 25 C -0.138 4.138 26 H 0.264 0.736 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.172 0.828 30 H 0.219 0.781 31 H 0.187 0.813 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.261 -4.901 -14.788 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.160 4.160 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.009 3.991 10 C -0.708 4.708 11 S 2.705 3.295 12 O -0.959 6.959 13 O -0.959 6.959 14 O -0.629 6.629 15 C 0.069 3.931 16 C -0.148 4.148 17 C -0.015 4.015 18 C -0.226 4.226 19 C 0.251 3.749 20 O -0.370 6.370 21 C 0.130 3.870 22 F -0.103 7.103 23 C -0.215 4.215 24 C -0.233 4.233 25 C -0.177 4.177 26 H 0.073 0.927 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.189 0.811 30 H 0.236 0.764 31 H 0.203 0.797 32 H 0.178 0.822 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.410 -4.942 -14.912 15.715 hybrid contribution -0.540 0.748 1.309 1.602 sum -0.950 -4.194 -13.603 14.266 Atomic orbital electron populations 1.70040 1.06792 1.27714 1.48256 1.25540 0.95524 1.01672 0.93292 0.85817 0.79664 0.80325 0.77961 1.19201 1.20145 1.20217 1.20718 0.93392 0.90127 1.52573 0.92610 1.18384 1.00461 0.94632 0.85600 1.30179 1.17019 1.10016 1.13610 1.05119 0.76693 0.73007 0.74705 1.93517 1.65834 1.58759 1.77745 1.93545 1.76196 1.52896 1.73270 1.85713 1.73140 1.53206 1.50794 1.18374 0.90789 0.91679 0.92263 1.21558 1.02760 0.97563 0.92944 1.21531 0.90289 0.91015 0.98688 1.21838 0.97816 1.04826 0.98120 1.24860 0.86854 0.75800 0.87361 1.90626 1.21132 1.52263 1.72994 1.17850 0.79149 0.95107 0.94892 1.91576 1.34184 1.90548 1.94018 1.21394 0.94633 1.02018 1.03444 1.23294 0.98265 0.96893 1.04826 1.22522 0.93931 1.00904 1.00387 0.92678 0.85291 0.84595 0.81089 0.76395 0.79748 0.82192 0.88342 0.89369 0.91319 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.42 12.99 21.44 0.28 -48.14 16 2 C 0.04 2.28 5.38 84.65 0.46 2.74 16 3 Si 0.94 42.73 29.55 68.60 2.03 44.76 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.53 -28.28 8.15 25.60 0.21 -28.07 16 8 H 0.06 3.05 7.83 -2.91 -0.02 3.03 16 9 C 0.01 0.53 1.32 -52.93 -0.07 0.46 16 10 C -0.58 -23.50 5.12 71.98 0.37 -23.13 16 11 S 2.60 102.87 4.91 -56.49 -0.28 102.60 16 12 O -0.96 -41.54 18.09 -118.57 -2.15 -43.68 16 13 O -0.96 -41.56 15.88 -118.57 -1.88 -43.44 16 14 O -0.67 -21.89 10.03 -58.96 -0.59 -22.48 16 15 C 0.11 3.27 4.81 22.66 0.11 3.37 16 16 C -0.13 -2.85 8.96 22.09 0.20 -2.65 16 17 C 0.00 0.03 9.73 22.32 0.22 0.25 16 18 C -0.22 -4.60 5.88 -20.11 -0.12 -4.72 16 19 C 0.39 6.58 11.43 70.02 0.80 7.38 16 20 O -0.50 -13.84 16.16 -3.15 -0.05 -13.89 16 21 C 0.15 4.29 7.29 22.72 0.17 4.45 16 22 F -0.13 -4.12 15.55 44.97 0.70 -3.42 16 23 C -0.19 -5.68 8.48 22.38 0.19 -5.49 16 24 C -0.20 -8.18 9.96 30.62 0.30 -7.87 16 25 C -0.14 -6.10 9.50 30.62 0.29 -5.80 16 26 H 0.26 13.74 8.32 -92.70 -0.77 12.97 16 27 H 0.13 5.50 6.95 -2.39 -0.02 5.48 16 28 H 0.14 4.52 8.09 -2.39 -0.02 4.50 16 29 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.22 0.47 8.06 -2.91 -0.02 0.44 16 31 H 0.19 0.61 8.06 -2.91 -0.02 0.58 16 32 H 0.16 4.38 7.55 -2.91 -0.02 4.36 16 33 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 34 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 35 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -75.32 335.98 2.30 -73.02 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.12 Total: 13.77 kcal Atomic # 6 Polarization: -62.21 SS G_CDS: 3.12 Total: -59.09 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.28 Total: -48.14 kcal Atomic # 8 Polarization: -118.82 SS G_CDS: -4.67 Total: -123.49 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.70 Total: -3.42 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 102.87 SS G_CDS: -0.28 Total: 102.60 kcal Total: -75.32 2.30 -73.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845961338.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.182 kcal (2) G-P(sol) polarization free energy of solvation -75.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds