Wall clock time and date at job start Tue Mar 31 2020 15:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 117.00422 * 2 1 4 4 C 1.38835 * 120.01414 * 0.02562 * 3 2 1 5 5 C 1.38186 * 120.10637 * 179.97438 * 4 3 2 6 6 C 1.38140 * 120.13018 * 359.72452 * 5 4 3 7 7 C 1.38985 * 120.02982 * 0.55018 * 6 5 4 8 8 S 1.76206 * 120.05152 * 179.71842 * 7 6 5 9 9 C 1.81401 * 102.99841 * 359.73204 * 8 7 6 10 10 C 1.52997 * 109.47149 * 179.97438 * 9 8 7 11 11 O 1.45194 * 109.47339 * 179.97438 * 10 9 8 12 12 C 1.34235 * 117.00385 * 179.97438 * 11 10 9 13 13 O 1.20824 * 119.99671 * 0.02562 * 12 11 10 14 14 C 1.50693 * 120.00281 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.47152 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00217 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99826 * 0.02562 * 16 15 14 18 18 C 1.38795 * 120.00307 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99997 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99976 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47651 * 89.99549 * 20 18 16 22 22 H 1.48503 * 109.47407 * 209.99805 * 20 18 16 23 23 H 1.48501 * 109.47214 * 329.99867 * 20 18 16 24 24 C 1.38543 * 120.01815 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.47006 * 299.99826 * 1 2 3 26 26 H 1.09000 * 109.46526 * 59.99549 * 1 2 3 27 27 H 1.08994 * 109.47147 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.94801 * 359.95296 * 4 3 2 29 29 H 1.08002 * 119.93668 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.98165 * 180.27761 * 6 5 4 31 31 H 1.09002 * 109.47085 * 299.99758 * 9 8 7 32 32 H 1.09001 * 109.47417 * 59.99884 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99990 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99620 * 10 9 8 35 35 H 1.08993 * 109.47418 * 300.00024 * 14 12 11 36 36 H 1.09000 * 109.47089 * 60.00096 * 14 12 11 37 37 H 0.97002 * 119.99627 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.06680 * 0.05327 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2903 2.3754 0.0005 5 6 1.9158 3.6076 0.0011 6 6 3.2950 3.6851 0.0068 7 6 4.0570 2.5228 0.0005 8 16 5.8163 2.6212 0.0004 9 6 6.1251 4.4087 0.0012 10 6 7.6333 4.6657 0.0018 11 8 7.8805 6.0965 0.0018 12 6 9.1628 6.4934 0.0029 13 8 10.0493 5.6725 0.0032 14 6 9.4967 7.9629 0.0036 15 16 11.2945 8.1732 0.0042 16 6 11.3969 9.9322 0.0057 17 1 10.4945 10.5256 0.0065 18 6 12.6371 10.5552 0.0071 19 7 12.7136 11.8693 0.0077 20 14 14.1979 9.5289 0.0065 21 1 14.6121 9.2585 -1.3937 22 1 15.2774 10.2691 0.7079 23 1 13.9450 8.2429 0.7048 24 6 3.4296 1.2836 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2118 2.3182 0.0002 29 1 1.3252 4.5118 0.0019 30 1 3.7813 4.6495 0.0118 31 1 5.6805 4.8546 -0.8885 32 1 5.6807 4.8538 0.8914 33 1 8.0775 4.2199 0.8917 34 1 8.0782 4.2206 -0.8882 35 1 9.0768 8.4314 -0.8865 36 1 9.0755 8.4308 0.8934 37 1 13.5804 12.3046 0.0083 38 1 4.0191 0.3787 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849681526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:58 Heat of formation + Delta-G solvation = -98.999752 kcal Electronic energy + Delta-G solvation = -20993.825930 eV Core-core repulsion = 17440.510567 eV Total energy + Delta-G solvation = -3553.315362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49668 -40.22891 -37.82040 -36.53311 -32.51943 -32.44857 -31.62223 -30.65543 -29.65265 -27.78347 -25.71930 -24.31616 -22.85724 -22.60355 -21.22275 -19.02061 -18.06049 -17.43338 -16.82374 -16.80070 -16.49738 -16.46909 -16.22865 -15.79338 -15.05879 -14.94568 -14.59982 -14.38378 -14.08414 -13.83492 -13.48563 -13.20375 -12.99602 -12.88028 -12.61847 -12.36118 -12.07628 -11.92141 -11.72936 -11.56150 -11.35208 -11.06998 -10.77511 -10.66561 -10.62416 -10.25198 -10.14061 -9.90147 -9.07727 -8.79531 -8.64941 -7.85131 -7.05505 -6.35774 -4.10540 0.70291 0.81248 0.95178 1.88358 2.45124 2.45420 2.81661 3.11201 3.20959 3.28012 3.44013 3.49883 4.25606 4.29351 4.30578 4.42260 4.54140 4.58195 4.64524 4.66372 4.68371 4.88730 4.96629 4.98304 5.03124 5.05078 5.11452 5.24868 5.40022 5.44236 5.60638 5.71598 5.81820 5.90504 5.93865 6.10699 6.44906 6.88482 7.86870 7.94077 8.35410 9.09263 10.73201 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.049303 B = 0.001665 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.777733 B =16808.609600 C =17345.336423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.145 3.855 4 C -0.214 4.214 5 C -0.058 4.058 6 C -0.170 4.170 7 C -0.046 4.046 8 S -0.078 6.078 9 C -0.117 4.117 10 C 0.083 3.917 11 O -0.356 6.356 12 C 0.480 3.520 13 O -0.486 6.486 14 C -0.099 4.099 15 S -0.139 6.139 16 C -0.524 4.524 17 H 0.092 0.908 18 C 0.098 3.902 19 N -0.876 5.876 20 Si 0.856 3.144 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.236 1.236 24 C -0.134 4.134 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.272 0.728 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.958 -20.948 0.070 33.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.098 3.902 4 C -0.235 4.235 5 C -0.078 4.078 6 C -0.194 4.194 7 C -0.159 4.159 8 S 0.167 5.833 9 C -0.265 4.265 10 C 0.007 3.993 11 O -0.274 6.274 12 C 0.321 3.679 13 O -0.371 6.371 14 C -0.247 4.247 15 S 0.088 5.912 16 C -0.671 4.671 17 H 0.110 0.890 18 C -0.111 4.111 19 N -0.512 5.512 20 Si 0.681 3.319 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.160 1.160 24 C -0.159 4.159 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.727 -22.853 0.072 32.943 hybrid contribution -1.509 1.864 -0.031 2.398 sum -25.236 -20.990 0.040 32.824 Atomic orbital electron populations 1.23094 0.78053 1.04158 1.01504 1.86081 1.21622 1.26692 1.88521 1.18791 0.91720 0.84332 0.95385 1.21277 1.00189 0.92286 1.09791 1.20862 0.93958 0.97255 0.95741 1.21162 0.94496 0.97184 1.06545 1.21458 0.96793 0.95662 1.01971 1.85561 0.99050 1.06890 1.91847 1.23593 0.99529 0.95794 1.07626 1.22435 0.92958 0.79673 1.04209 1.86477 1.30082 1.25892 1.84985 1.23301 0.79874 0.92279 0.72423 1.90683 1.47733 1.54672 1.44005 1.23017 1.04122 0.90091 1.07467 1.84832 0.97766 1.11077 1.97568 1.22256 0.97618 0.87809 1.59431 0.89033 1.24687 0.98751 0.94643 0.93037 1.69930 1.25958 1.07827 1.47524 0.86751 0.83016 0.82156 0.80010 1.19100 1.19751 1.15960 1.19856 0.91474 0.96887 1.07647 0.92477 0.92483 0.88053 0.85182 0.85184 0.85297 0.87844 0.87849 0.89990 0.90000 0.87078 0.87032 0.91789 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.57 10.49 -19.41 -0.20 -2.78 16 3 C 0.14 1.27 6.68 -39.25 -0.26 1.01 16 4 C -0.21 -1.56 9.04 -39.38 -0.36 -1.91 16 5 C -0.06 -0.42 10.03 -39.64 -0.40 -0.82 16 6 C -0.17 -1.43 9.36 -39.34 -0.37 -1.80 16 7 C -0.05 -0.43 6.11 -39.06 -0.24 -0.67 16 8 S -0.08 -0.74 21.92 -107.50 -2.36 -3.10 16 9 C -0.12 -1.06 4.71 37.16 0.18 -0.88 16 10 C 0.08 0.97 5.47 37.16 0.20 1.17 16 11 O -0.36 -5.09 10.22 -39.27 -0.40 -5.49 16 12 C 0.48 8.48 7.98 36.00 0.29 8.76 16 13 O -0.49 -9.88 15.61 -18.75 -0.29 -10.17 16 14 C -0.10 -1.87 6.27 36.00 0.23 -1.65 16 15 S -0.14 -3.39 18.55 -107.50 -1.99 -5.39 16 16 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 17 H 0.09 2.68 8.03 -52.48 -0.42 2.25 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -25.91 13.97 55.49 0.78 -25.13 16 20 Si 0.86 21.20 27.74 -169.99 -4.71 16.49 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 24 C -0.13 -1.27 9.73 -39.22 -0.38 -1.65 16 25 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 26 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 27 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.13 0.63 6.29 -52.48 -0.33 0.30 16 29 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.13 0.94 5.87 -52.49 -0.31 0.63 16 31 H 0.10 0.85 7.76 -51.92 -0.40 0.44 16 32 H 0.10 0.85 7.73 -51.92 -0.40 0.44 16 33 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 34 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 35 H 0.11 1.95 8.14 -51.92 -0.42 1.53 16 36 H 0.11 1.96 8.14 -51.92 -0.42 1.54 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -32.63 356.31 -8.50 -41.13 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.77 Total: -1.91 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.78 Total: -25.13 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.90 Total: -18.44 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.49 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -4.35 Total: -8.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.63 -8.50 -41.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849681526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.869 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds