Wall clock time and date at job start Tue Mar 31 2020 15:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 117.00422 * 2 1 4 4 C 1.38835 * 120.01414 * 0.02562 * 3 2 1 5 5 C 1.38186 * 120.10637 * 179.97438 * 4 3 2 6 6 C 1.38140 * 120.13018 * 359.72452 * 5 4 3 7 7 C 1.38985 * 120.02982 * 0.55018 * 6 5 4 8 8 S 1.76206 * 120.05152 * 179.71842 * 7 6 5 9 9 C 1.81401 * 102.99841 * 359.73204 * 8 7 6 10 10 C 1.52997 * 109.47149 * 179.97438 * 9 8 7 11 11 O 1.45194 * 109.47339 * 179.97438 * 10 9 8 12 12 C 1.34235 * 117.00385 * 179.97438 * 11 10 9 13 13 O 1.20824 * 119.99671 * 0.02562 * 12 11 10 14 14 C 1.50693 * 120.00281 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.47152 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00217 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99826 * 0.02562 * 16 15 14 18 18 C 1.38795 * 120.00307 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99997 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99976 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47651 * 89.99549 * 20 18 16 22 22 H 1.48503 * 109.47407 * 209.99805 * 20 18 16 23 23 H 1.48501 * 109.47214 * 329.99867 * 20 18 16 24 24 C 1.38543 * 120.01815 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.47006 * 299.99826 * 1 2 3 26 26 H 1.09000 * 109.46526 * 59.99549 * 1 2 3 27 27 H 1.08994 * 109.47147 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.94801 * 359.95296 * 4 3 2 29 29 H 1.08002 * 119.93668 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.98165 * 180.27761 * 6 5 4 31 31 H 1.09002 * 109.47085 * 299.99758 * 9 8 7 32 32 H 1.09001 * 109.47417 * 59.99884 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99990 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99620 * 10 9 8 35 35 H 1.08993 * 109.47418 * 300.00024 * 14 12 11 36 36 H 1.09000 * 109.47089 * 60.00096 * 14 12 11 37 37 H 0.97002 * 119.99627 * 180.02562 * 19 18 16 38 38 H 1.08000 * 120.06680 * 0.05327 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2903 2.3754 0.0005 5 6 1.9158 3.6076 0.0011 6 6 3.2950 3.6851 0.0068 7 6 4.0570 2.5228 0.0005 8 16 5.8163 2.6212 0.0004 9 6 6.1251 4.4087 0.0012 10 6 7.6333 4.6657 0.0018 11 8 7.8805 6.0965 0.0018 12 6 9.1628 6.4934 0.0029 13 8 10.0493 5.6725 0.0032 14 6 9.4967 7.9629 0.0036 15 16 11.2945 8.1732 0.0042 16 6 11.3969 9.9322 0.0057 17 1 10.4945 10.5256 0.0065 18 6 12.6371 10.5552 0.0071 19 7 12.7136 11.8693 0.0077 20 14 14.1979 9.5289 0.0065 21 1 14.6121 9.2585 -1.3937 22 1 15.2774 10.2691 0.7079 23 1 13.9450 8.2429 0.7048 24 6 3.4296 1.2836 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2118 2.3182 0.0002 29 1 1.3252 4.5118 0.0019 30 1 3.7813 4.6495 0.0118 31 1 5.6805 4.8546 -0.8885 32 1 5.6807 4.8538 0.8914 33 1 8.0775 4.2199 0.8917 34 1 8.0782 4.2206 -0.8882 35 1 9.0768 8.4314 -0.8865 36 1 9.0755 8.4308 0.8934 37 1 13.5804 12.3046 0.0083 38 1 4.0191 0.3787 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849681526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:57 Heat of formation + Delta-G solvation = -117.132411 kcal Electronic energy + Delta-G solvation = -20994.612221 eV Core-core repulsion = 17440.510567 eV Total energy + Delta-G solvation = -3554.101653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57283 -41.04505 -38.37237 -37.84570 -34.68879 -33.39848 -32.20171 -31.43425 -30.91838 -28.16465 -27.89382 -25.17366 -23.55638 -23.20088 -22.51207 -19.98597 -19.57869 -18.85677 -17.98067 -17.46170 -17.43291 -17.09337 -17.09037 -16.80634 -16.69257 -16.06431 -16.02164 -15.24004 -14.91243 -14.87737 -14.54888 -14.40554 -14.19773 -13.89194 -13.43689 -13.30127 -13.23382 -13.08101 -13.01923 -12.75337 -12.58614 -12.20520 -12.09862 -11.90050 -11.77828 -11.68597 -11.28385 -11.18097 -10.74374 -10.62481 -9.39332 -9.06554 -8.54897 -8.52360 -6.26000 0.02637 0.09324 0.34879 0.83548 1.03795 1.19103 1.32362 1.41592 1.50901 1.90377 2.23889 2.35841 2.61234 2.64841 2.86101 3.40899 3.64221 3.77852 3.80981 4.04381 4.06606 4.11365 4.17365 4.21039 4.39886 4.40114 4.40480 4.42877 4.48659 4.53373 4.72513 4.82843 5.10809 5.16498 5.24071 5.36872 5.57974 5.69858 6.11759 6.37170 6.57035 6.91877 8.59821 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.049303 B = 0.001665 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.777733 B =16808.609600 C =17345.336423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.135 3.865 4 C -0.212 4.212 5 C -0.059 4.059 6 C -0.179 4.179 7 C -0.056 4.056 8 S -0.097 6.097 9 C -0.106 4.106 10 C 0.080 3.920 11 O -0.344 6.344 12 C 0.492 3.508 13 O -0.516 6.516 14 C -0.089 4.089 15 S -0.164 6.164 16 C -0.532 4.532 17 H 0.066 0.934 18 C 0.049 3.951 19 N -0.914 5.914 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.259 1.259 23 H -0.235 1.235 24 C -0.155 4.155 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.278 0.722 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.713 -21.714 0.086 35.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.087 3.913 4 C -0.233 4.233 5 C -0.079 4.079 6 C -0.203 4.203 7 C -0.169 4.169 8 S 0.147 5.853 9 C -0.254 4.254 10 C 0.004 3.996 11 O -0.261 6.261 12 C 0.334 3.666 13 O -0.404 6.404 14 C -0.238 4.238 15 S 0.063 5.937 16 C -0.679 4.679 17 H 0.085 0.915 18 C -0.157 4.157 19 N -0.552 5.552 20 Si 0.735 3.265 21 H -0.186 1.186 22 H -0.183 1.183 23 H -0.159 1.159 24 C -0.179 4.179 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.158 0.842 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.087 0.913 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.522 -23.626 0.089 34.779 hybrid contribution -1.227 2.017 -0.041 2.361 sum -26.749 -21.609 0.048 34.386 Atomic orbital electron populations 1.23386 0.76044 1.05701 1.02540 1.86056 1.23786 1.26701 1.88471 1.18950 0.91665 0.85185 0.95471 1.21597 1.01470 0.91714 1.08531 1.21225 0.93750 0.98315 0.94602 1.21396 0.95200 0.97181 1.06517 1.21485 0.96319 0.96152 1.02980 1.85612 1.00098 1.07320 1.92258 1.23496 0.97492 0.95531 1.08832 1.22652 0.94903 0.77753 1.04262 1.86439 1.27742 1.27743 1.84160 1.22874 0.80593 0.91318 0.71788 1.90683 1.48829 1.55229 1.45609 1.22944 0.99821 0.91771 1.09213 1.84687 1.03329 1.08018 1.97704 1.22410 0.96889 0.89832 1.58806 0.91545 1.25529 1.01796 0.95663 0.92736 1.70010 1.27098 1.09350 1.48705 0.85895 0.79626 0.80740 0.80289 1.18611 1.18337 1.15852 1.19959 0.92261 0.96895 1.08823 0.91380 0.91387 0.86445 0.82696 0.82548 0.84231 0.86662 0.86662 0.90043 0.90051 0.85377 0.85337 0.91267 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.34 -5.21 10.49 -92.35 -0.97 -6.18 16 3 C 0.13 2.24 6.68 22.49 0.15 2.39 16 4 C -0.21 -2.63 9.04 22.40 0.20 -2.42 16 5 C -0.06 -0.71 10.03 22.23 0.22 -0.49 16 6 C -0.18 -2.69 9.36 22.43 0.21 -2.48 16 7 C -0.06 -1.02 6.11 22.61 0.14 -0.89 16 8 S -0.10 -1.78 21.92 -56.49 -1.24 -3.02 16 9 C -0.11 -1.71 4.71 71.98 0.34 -1.37 16 10 C 0.08 1.73 5.47 71.98 0.39 2.12 16 11 O -0.34 -9.08 10.22 -51.47 -0.53 -9.61 16 12 C 0.49 16.56 7.98 71.23 0.57 17.13 16 13 O -0.52 -20.41 15.61 21.97 0.34 -20.06 16 14 C -0.09 -3.24 6.27 71.23 0.45 -2.80 16 15 S -0.16 -7.90 18.55 -56.49 -1.05 -8.95 16 16 C -0.53 -30.00 10.04 67.95 0.68 -29.31 16 17 H 0.07 3.95 8.03 -2.91 -0.02 3.93 16 18 C 0.05 2.78 5.50 84.86 0.47 3.25 16 19 N -0.91 -54.47 13.97 21.65 0.30 -54.17 16 20 Si 0.91 43.52 27.74 68.60 1.90 45.42 16 21 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.23 -11.07 6.74 99.48 0.67 -10.40 16 24 C -0.15 -2.94 9.73 22.50 0.22 -2.72 16 25 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16 26 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16 27 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.16 1.03 6.29 -2.91 -0.02 1.02 16 29 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 30 H 0.14 1.69 5.87 -2.91 -0.02 1.68 16 31 H 0.11 1.61 7.76 -2.39 -0.02 1.60 16 32 H 0.11 1.61 7.73 -2.39 -0.02 1.59 16 33 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 34 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 35 H 0.13 4.26 8.14 -2.40 -0.02 4.24 16 36 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 37 H 0.28 15.31 8.31 -92.71 -0.77 14.53 16 38 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -70.03 356.31 4.96 -65.07 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.04 Total: 7.87 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 5.15 Total: -16.36 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.30 Total: -54.17 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.15 Total: -35.86 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Atomic # 16 Polarization: -9.69 SS G_CDS: -2.29 Total: -11.97 kcal Total: -70.03 4.96 -65.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849681526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.060 kcal (2) G-P(sol) polarization free energy of solvation -70.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds