Wall clock time and date at job start Tue Mar 31 2020 15:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00362 * 2 1 4 4 H 1.48501 * 109.47210 * 270.00707 * 3 2 1 5 5 H 1.48504 * 109.47029 * 30.00094 * 3 2 1 6 6 H 1.48491 * 109.47343 * 150.00198 * 3 2 1 7 7 C 1.37876 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00254 * 175.46321 * 7 2 1 9 9 C 1.50702 * 119.99986 * 355.73437 * 7 2 1 10 10 C 1.53001 * 115.54977 * 35.32271 * 9 7 2 11 11 O 1.45195 * 109.47094 * 54.23901 * 10 9 7 12 12 C 1.34710 * 117.00161 * 184.93985 * 11 10 9 13 13 O 1.21473 * 119.99984 * 5.03734 * 12 11 10 14 14 C 1.47734 * 120.00378 * 185.03432 * 12 11 10 15 15 C 1.39628 * 120.14685 * 4.77189 * 14 12 11 16 16 C 1.37936 * 119.84581 * 179.72043 * 15 14 12 17 17 C 1.38372 * 120.15069 * 0.55368 * 16 15 14 18 18 S 1.76203 * 119.84780 * 179.74231 * 17 16 15 19 19 O 1.42101 * 106.40169 * 23.51826 * 18 17 16 20 20 O 1.42102 * 106.40039 * 156.43904 * 18 17 16 21 21 F 1.61004 * 107.21891 * 269.97646 * 18 17 16 22 22 C 1.38369 * 120.30208 * 359.72274 * 17 16 15 23 23 C 1.37942 * 120.14873 * 359.97438 * 22 17 16 24 24 C 1.52998 * 117.50079 * 249.65210 * 9 7 2 25 25 C 1.52998 * 117.49824 * 180.98853 * 9 7 2 26 26 H 0.97003 * 120.00034 * 4.99720 * 1 2 3 27 27 H 1.09001 * 109.47070 * 174.24332 * 10 9 7 28 28 H 1.09005 * 109.46614 * 294.24135 * 10 9 7 29 29 H 1.08005 * 120.07465 * 359.97438 * 15 14 12 30 30 H 1.08005 * 119.92531 * 180.25387 * 16 15 14 31 31 H 1.07992 * 119.92382 * 180.02562 * 22 17 16 32 32 H 1.08006 * 120.07411 * 179.97438 * 23 22 17 33 33 H 1.09002 * 117.49743 * 359.97438 * 24 9 7 34 34 H 1.08998 * 117.50154 * 145.02418 * 24 9 7 35 35 H 1.09005 * 117.49832 * 214.97548 * 25 9 7 36 36 H 1.08996 * 117.50044 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0819 -1.1956 -0.0745 9 6 1.2541 -2.4974 0.0960 10 6 -0.1000 -2.5335 -0.6156 11 8 0.0719 -2.1419 -2.0031 12 6 -1.0444 -2.0222 -2.7476 13 8 -2.1361 -2.1490 -2.2301 14 6 -0.9411 -1.7366 -4.1933 15 6 0.3102 -1.6887 -4.8110 16 6 0.3991 -1.4272 -6.1624 17 6 -0.7474 -1.2013 -6.9035 18 16 -0.6241 -0.8612 -8.6280 19 8 0.6128 -1.4128 -9.0583 20 8 -1.8754 -1.2199 -9.1981 21 9 -0.4913 0.7351 -8.7908 22 6 -1.9903 -1.2415 -6.2966 23 6 -2.0940 -1.5081 -4.9472 24 6 1.3923 -3.2979 1.3924 25 6 2.0773 -3.7869 0.1138 26 1 -0.4850 0.8369 -0.0732 27 1 -0.5071 -3.5436 -0.5708 28 1 -0.7864 -1.8429 -0.1255 29 1 1.2061 -1.8601 -4.2328 30 1 1.3661 -1.3939 -6.6423 31 1 -2.8811 -1.0647 -6.8809 32 1 -3.0647 -1.5388 -4.4746 33 1 2.0264 -2.8821 2.1755 34 1 0.5189 -3.8506 1.7383 35 1 1.6540 -4.6611 -0.3810 36 1 3.1616 -3.6926 0.0553 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849793098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:22 Heat of formation + Delta-G solvation = -153.920346 kcal Electronic energy + Delta-G solvation = -25210.308547 eV Core-core repulsion = 21088.398473 eV Total energy + Delta-G solvation = -4121.910074 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.46382 -40.16032 -38.72969 -37.99723 -36.81753 -36.63995 -35.16028 -32.28588 -31.96420 -31.38808 -26.90946 -25.59023 -24.51681 -23.07127 -21.39660 -21.00587 -20.42811 -19.28241 -18.82226 -18.03596 -17.48284 -17.08372 -16.76248 -15.92028 -15.56656 -15.15904 -15.06665 -14.83859 -14.69326 -14.45721 -14.03703 -13.84061 -13.62190 -13.34315 -13.19447 -13.00170 -12.81188 -12.70320 -12.19397 -12.04907 -11.68924 -11.50220 -11.38120 -11.09910 -10.89868 -10.58968 -10.44678 -10.17926 -9.76007 -9.72505 -9.45704 -9.35385 -9.08400 -8.87500 -8.35862 -6.09000 -4.22587 -0.53089 0.07579 1.02676 2.43556 2.61095 3.04442 3.18250 3.23585 3.27662 3.30228 3.62716 3.67653 4.26778 4.44146 4.54023 4.79593 4.95518 5.01836 5.16946 5.34951 5.41470 5.55591 5.75366 5.81327 5.93874 6.08727 6.14151 6.36355 6.45470 6.51309 6.54541 6.68643 6.85590 7.14456 7.31988 7.40983 7.80961 8.21159 8.41961 8.75376 9.40091 10.85726 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003322 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.516875 B = 8426.379300 C = 9050.152807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.481 4.481 8 H 0.063 0.937 9 C 0.044 3.956 10 C 0.118 3.882 11 O -0.311 6.311 12 C 0.493 3.507 13 O -0.508 6.508 14 C -0.038 4.038 15 C -0.082 4.082 16 C -0.026 4.026 17 C -0.678 4.678 18 S 2.672 3.328 19 O -0.925 6.925 20 O -0.927 6.927 21 F -0.471 7.471 22 C -0.028 4.028 23 C -0.084 4.084 24 C -0.194 4.194 25 C -0.208 4.208 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.122 0.878 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -1.318 -14.149 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.130 4.130 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.044 3.956 10 C 0.046 3.954 11 O -0.224 6.224 12 C 0.336 3.664 13 O -0.399 6.399 14 C -0.040 4.040 15 C -0.101 4.101 16 C -0.046 4.046 17 C -0.767 4.767 18 S 2.762 3.238 19 O -0.924 6.924 20 O -0.926 6.926 21 F -0.471 7.471 22 C -0.047 4.047 23 C -0.103 4.103 24 C -0.232 4.232 25 C -0.246 4.246 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.140 0.860 29 H 0.177 0.823 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.733 -1.067 -14.581 14.873 hybrid contribution 0.311 0.700 0.986 1.248 sum -2.422 -0.367 -13.595 13.814 Atomic orbital electron populations 1.69746 1.05938 1.26830 1.49713 1.24962 0.94863 0.99262 0.93901 0.86488 0.79828 0.82910 0.78239 1.20550 1.21083 1.19710 1.20460 0.92802 0.88336 1.50170 0.91889 1.18930 0.92141 0.90702 0.93870 1.22969 0.99902 0.96515 0.76044 1.86482 1.32579 1.77291 1.26083 1.20872 0.83737 0.74761 0.87061 1.90778 1.28953 1.46845 1.73289 1.19916 0.94730 0.97588 0.91738 1.21813 0.98281 0.95640 0.94391 1.20995 0.97200 0.92387 0.93986 1.30572 1.00761 1.20390 1.24930 1.03874 0.75093 0.69864 0.74957 1.93756 1.44221 1.74675 1.79726 1.93749 1.43223 1.80188 1.75397 1.93691 1.96692 1.61181 1.95502 1.20874 0.95704 0.93281 0.94812 1.21441 0.99026 0.96640 0.93219 1.22996 1.01781 1.06020 0.92430 1.22964 0.98814 0.99825 1.02969 0.92671 0.95899 0.86020 0.82333 0.82958 0.83031 0.83137 0.89719 0.91365 0.91241 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.47 10.16 55.43 0.56 -22.91 16 2 C 0.07 1.87 5.35 -17.82 -0.10 1.77 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.48 -12.35 8.79 -34.44 -0.30 -12.65 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.04 1.04 2.21 -155.66 -0.34 0.69 16 10 C 0.12 2.77 4.45 37.16 0.17 2.94 16 11 O -0.31 -6.91 8.99 -40.52 -0.36 -7.28 16 12 C 0.49 9.91 7.88 34.61 0.27 10.18 16 13 O -0.51 -11.17 16.06 -19.25 -0.31 -11.48 16 14 C -0.04 -0.60 5.87 -104.98 -0.62 -1.22 16 15 C -0.08 -1.13 9.62 -39.17 -0.38 -1.51 16 16 C -0.03 -0.29 9.50 -39.64 -0.38 -0.67 16 17 C -0.68 -6.87 6.03 -39.48 -0.24 -7.11 16 18 S 2.67 23.11 6.85 -107.50 -0.74 22.37 16 19 O -0.93 -10.04 17.29 -57.17 -0.99 -11.03 16 20 O -0.93 -9.82 17.29 -57.17 -0.99 -10.81 16 21 F -0.47 -4.00 17.91 2.25 0.04 -3.96 16 22 C -0.03 -0.29 9.50 -39.64 -0.38 -0.67 16 23 C -0.08 -1.10 9.60 -39.17 -0.38 -1.48 16 24 C -0.19 -4.10 9.96 -26.69 -0.27 -4.37 16 25 C -0.21 -4.26 9.92 -26.69 -0.26 -4.52 16 26 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 27 H 0.02 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.12 3.18 5.76 -51.93 -0.30 2.88 16 29 H 0.16 2.17 7.62 -52.48 -0.40 1.77 16 30 H 0.15 1.28 7.60 -52.48 -0.40 0.88 16 31 H 0.15 1.15 7.60 -52.49 -0.40 0.75 16 32 H 0.15 1.85 7.66 -52.48 -0.40 1.45 16 33 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -31.74 337.13 -9.48 -41.22 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.56 Total: 2.27 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -3.19 Total: -18.60 kcal Atomic # 7 Polarization: -23.47 SS G_CDS: 0.56 Total: -22.91 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -2.65 Total: -40.59 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 23.11 SS G_CDS: -0.74 Total: 22.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.74 -9.48 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849793098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.703 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds