Wall clock time and date at job start Tue Mar 31 2020 15:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00362 * 2 1 4 4 H 1.48501 * 109.47210 * 270.00707 * 3 2 1 5 5 H 1.48504 * 109.47029 * 30.00094 * 3 2 1 6 6 H 1.48491 * 109.47343 * 150.00198 * 3 2 1 7 7 C 1.37876 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00254 * 175.46321 * 7 2 1 9 9 C 1.50702 * 119.99986 * 355.73437 * 7 2 1 10 10 C 1.53001 * 115.54977 * 35.32271 * 9 7 2 11 11 O 1.45195 * 109.47094 * 54.23901 * 10 9 7 12 12 C 1.34710 * 117.00161 * 184.93985 * 11 10 9 13 13 O 1.21473 * 119.99984 * 5.03734 * 12 11 10 14 14 C 1.47734 * 120.00378 * 185.03432 * 12 11 10 15 15 C 1.39628 * 120.14685 * 4.77189 * 14 12 11 16 16 C 1.37936 * 119.84581 * 179.72043 * 15 14 12 17 17 C 1.38372 * 120.15069 * 0.55368 * 16 15 14 18 18 S 1.76203 * 119.84780 * 179.74231 * 17 16 15 19 19 O 1.42101 * 106.40169 * 23.51826 * 18 17 16 20 20 O 1.42102 * 106.40039 * 156.43904 * 18 17 16 21 21 F 1.61004 * 107.21891 * 269.97646 * 18 17 16 22 22 C 1.38369 * 120.30208 * 359.72274 * 17 16 15 23 23 C 1.37942 * 120.14873 * 359.97438 * 22 17 16 24 24 C 1.52998 * 117.50079 * 249.65210 * 9 7 2 25 25 C 1.52998 * 117.49824 * 180.98853 * 9 7 2 26 26 H 0.97003 * 120.00034 * 4.99720 * 1 2 3 27 27 H 1.09001 * 109.47070 * 174.24332 * 10 9 7 28 28 H 1.09005 * 109.46614 * 294.24135 * 10 9 7 29 29 H 1.08005 * 120.07465 * 359.97438 * 15 14 12 30 30 H 1.08005 * 119.92531 * 180.25387 * 16 15 14 31 31 H 1.07992 * 119.92382 * 180.02562 * 22 17 16 32 32 H 1.08006 * 120.07411 * 179.97438 * 23 22 17 33 33 H 1.09002 * 117.49743 * 359.97438 * 24 9 7 34 34 H 1.08998 * 117.50154 * 145.02418 * 24 9 7 35 35 H 1.09005 * 117.49832 * 214.97548 * 25 9 7 36 36 H 1.08996 * 117.50044 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0819 -1.1956 -0.0745 9 6 1.2541 -2.4974 0.0960 10 6 -0.1000 -2.5335 -0.6156 11 8 0.0719 -2.1419 -2.0031 12 6 -1.0444 -2.0222 -2.7476 13 8 -2.1361 -2.1490 -2.2301 14 6 -0.9411 -1.7366 -4.1933 15 6 0.3102 -1.6887 -4.8110 16 6 0.3991 -1.4272 -6.1624 17 6 -0.7474 -1.2013 -6.9035 18 16 -0.6241 -0.8612 -8.6280 19 8 0.6128 -1.4128 -9.0583 20 8 -1.8754 -1.2199 -9.1981 21 9 -0.4913 0.7351 -8.7908 22 6 -1.9903 -1.2415 -6.2966 23 6 -2.0940 -1.5081 -4.9472 24 6 1.3923 -3.2979 1.3924 25 6 2.0773 -3.7869 0.1138 26 1 -0.4850 0.8369 -0.0732 27 1 -0.5071 -3.5436 -0.5708 28 1 -0.7864 -1.8429 -0.1255 29 1 1.2061 -1.8601 -4.2328 30 1 1.3661 -1.3939 -6.6423 31 1 -2.8811 -1.0647 -6.8809 32 1 -3.0647 -1.5388 -4.4746 33 1 2.0264 -2.8821 2.1755 34 1 0.5189 -3.8506 1.7383 35 1 1.6540 -4.6611 -0.3810 36 1 3.1616 -3.6926 0.0553 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849793098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:21 Heat of formation + Delta-G solvation = -173.190932 kcal Electronic energy + Delta-G solvation = -25211.144183 eV Core-core repulsion = 21088.398473 eV Total energy + Delta-G solvation = -4122.745709 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.066 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.19199 -41.54494 -39.97643 -38.81146 -38.52006 -37.45800 -36.84379 -34.21426 -33.03832 -32.34852 -28.57979 -27.49123 -25.77643 -24.04229 -23.03899 -22.19994 -21.37612 -21.11354 -19.69249 -18.96538 -18.68277 -18.61969 -17.79387 -17.45539 -17.27199 -16.53186 -16.16962 -15.97972 -15.87885 -15.52475 -15.23483 -15.01679 -14.74534 -14.57427 -14.35456 -13.97256 -13.79655 -13.70911 -13.63506 -13.53150 -13.45127 -12.91147 -12.76311 -12.48354 -12.38426 -12.32525 -12.14360 -11.83540 -11.47181 -11.25046 -10.92463 -10.79738 -10.69901 -10.29484 -10.19776 -8.01838 -6.21759 -1.32744 -0.94584 0.07459 1.24713 1.39968 1.43461 1.52068 1.75288 1.81491 2.17104 2.40168 2.51669 2.90414 3.00699 3.45711 3.55402 3.68929 3.74381 4.02261 4.10299 4.21652 4.36487 4.39872 4.55983 4.67664 4.72086 4.77181 4.79866 4.90978 4.97425 5.11557 5.17883 5.43786 5.48959 5.51025 5.71220 5.83783 6.30833 6.72431 6.85807 7.42557 8.89750 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.003322 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.516875 B = 8426.379300 C = 9050.152807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.031 3.969 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.005 3.995 10 C 0.126 3.874 11 O -0.323 6.323 12 C 0.488 3.512 13 O -0.538 6.538 14 C -0.070 4.070 15 C -0.091 4.091 16 C -0.022 4.022 17 C -0.670 4.670 18 S 2.718 3.282 19 O -0.940 6.940 20 O -0.938 6.938 21 F -0.464 7.464 22 C -0.019 4.019 23 C -0.088 4.088 24 C -0.188 4.188 25 C -0.186 4.186 26 H 0.257 0.743 27 H 0.031 0.969 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.182 0.818 31 H 0.186 0.814 32 H 0.152 0.848 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 -1.136 -16.302 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.169 4.169 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.531 4.531 8 H 0.076 0.924 9 C 0.005 3.995 10 C 0.053 3.947 11 O -0.237 6.237 12 C 0.334 3.666 13 O -0.431 6.431 14 C -0.071 4.071 15 C -0.110 4.110 16 C -0.041 4.041 17 C -0.756 4.756 18 S 2.806 3.194 19 O -0.938 6.938 20 O -0.937 6.937 21 F -0.464 7.464 22 C -0.038 4.038 23 C -0.107 4.107 24 C -0.226 4.226 25 C -0.223 4.223 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.169 0.831 30 H 0.199 0.801 31 H 0.204 0.796 32 H 0.170 0.830 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.096 -0.900 -16.721 16.876 hybrid contribution 0.108 0.631 1.551 1.678 sum -1.988 -0.269 -15.170 15.302 Atomic orbital electron populations 1.69936 1.06968 1.26852 1.50720 1.25601 0.95489 1.01929 0.93894 0.85640 0.78778 0.79526 0.78276 1.20054 1.21370 1.19150 1.20695 0.92725 0.89658 1.50054 0.92387 1.19062 0.92898 0.91442 0.96109 1.22676 0.99335 0.95946 0.76725 1.86476 1.33814 1.77750 1.25624 1.21670 0.82796 0.73523 0.88647 1.90738 1.29646 1.48422 1.74314 1.19810 0.96771 1.01225 0.89300 1.21806 0.97189 0.96307 0.95680 1.21295 0.98934 0.91089 0.92776 1.30922 1.00373 1.18535 1.25804 1.02669 0.74062 0.69264 0.73436 1.93737 1.45122 1.75333 1.79637 1.93733 1.44014 1.80651 1.75271 1.93683 1.96644 1.60670 1.95357 1.21255 0.97222 0.91541 0.93752 1.21560 0.98221 0.96668 0.94281 1.23009 1.02322 1.05190 0.92045 1.22978 0.98897 0.98551 1.01843 0.93290 0.95119 0.89196 0.83105 0.80114 0.79646 0.83024 0.89801 0.89983 0.89402 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.62 10.16 21.45 0.22 -49.40 16 2 C 0.03 1.59 5.35 84.65 0.45 2.05 16 3 Si 0.95 41.70 29.54 68.60 2.03 43.73 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.49 -25.68 8.79 25.60 0.22 -25.46 16 8 H 0.06 2.98 7.82 -2.91 -0.02 2.96 16 9 C 0.01 0.25 2.21 -52.93 -0.12 0.13 16 10 C 0.13 6.11 4.45 71.98 0.32 6.43 16 11 O -0.32 -14.90 8.99 -56.20 -0.51 -15.40 16 12 C 0.49 20.50 7.88 70.33 0.55 21.05 16 13 O -0.54 -24.89 16.06 19.92 0.32 -24.57 16 14 C -0.07 -2.24 5.87 -20.10 -0.12 -2.35 16 15 C -0.09 -2.47 9.62 22.53 0.22 -2.25 16 16 C -0.02 -0.44 9.50 22.23 0.21 -0.23 16 17 C -0.67 -11.69 6.03 22.33 0.13 -11.55 16 18 S 2.72 38.02 6.85 -56.49 -0.39 37.63 16 19 O -0.94 -17.36 17.29 -128.00 -2.21 -19.58 16 20 O -0.94 -16.65 17.29 -128.00 -2.21 -18.87 16 21 F -0.46 -6.31 17.91 44.97 0.81 -5.50 16 22 C -0.02 -0.35 9.50 22.23 0.21 -0.14 16 23 C -0.09 -2.26 9.60 22.53 0.22 -2.04 16 24 C -0.19 -7.81 9.96 30.62 0.30 -7.51 16 25 C -0.19 -7.37 9.92 30.62 0.30 -7.07 16 26 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 27 H 0.03 1.38 8.09 -2.39 -0.02 1.36 16 28 H 0.09 4.93 5.76 -2.38 -0.01 4.91 16 29 H 0.15 4.23 7.62 -2.91 -0.02 4.21 16 30 H 0.18 2.49 7.60 -2.91 -0.02 2.47 16 31 H 0.19 2.13 7.60 -2.91 -0.02 2.11 16 32 H 0.15 3.75 7.66 -2.91 -0.02 3.73 16 33 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 36 H 0.09 3.28 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -68.87 337.13 2.10 -66.77 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.13 Total: 14.13 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 2.92 Total: -28.94 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.22 Total: -49.40 kcal Atomic # 8 Polarization: -73.80 SS G_CDS: -4.61 Total: -78.41 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.81 Total: -5.50 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 38.02 SS G_CDS: -0.39 Total: 37.63 kcal Total: -68.87 2.10 -66.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849793098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.421 kcal (2) G-P(sol) polarization free energy of solvation -68.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds