Wall clock time and date at job start Tue Mar 31 2020 15:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76202 * 102.99936 * 2 1 4 4 C 1.39190 * 119.92959 * 359.97438 * 3 2 1 5 5 C 1.37979 * 120.32660 * 180.02562 * 4 3 2 6 6 C 1.38697 * 120.18335 * 0.02562 * 5 4 3 7 7 O 1.35728 * 120.07415 * 179.97438 * 6 5 4 8 8 C 1.40151 * 119.84764 * 359.97158 * 6 5 4 9 9 C 1.47416 * 120.15678 * 180.02562 * 8 6 5 10 10 O 1.21511 * 119.99532 * 359.72790 * 9 8 6 11 11 O 1.34749 * 119.99675 * 179.97438 * 9 8 6 12 12 C 1.45208 * 116.99513 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46660 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47181 * 179.97438 * 13 12 11 15 15 S 1.80994 * 109.47488 * 179.97438 * 14 13 12 16 16 C 1.76204 * 100.00009 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99933 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99731 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00345 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99653 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47254 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47399 * 119.99799 * 20 18 16 23 23 H 1.48502 * 109.46934 * 239.99513 * 20 18 16 24 24 C 1.38454 * 119.92607 * 180.25369 * 3 2 1 25 25 H 1.09000 * 109.47419 * 299.99862 * 1 2 3 26 26 H 1.09004 * 109.47005 * 60.00232 * 1 2 3 27 27 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.83365 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.90958 * 179.97438 * 5 4 3 30 30 H 0.96704 * 114.00212 * 270.01485 * 7 6 5 31 31 H 1.09003 * 109.46907 * 299.99907 * 12 11 9 32 32 H 1.08995 * 109.46854 * 60.00352 * 12 11 9 33 33 H 1.08999 * 109.47692 * 299.99922 * 13 12 11 34 34 H 1.09000 * 109.47887 * 60.00208 * 13 12 11 35 35 H 1.08999 * 109.46957 * 300.00634 * 14 13 12 36 36 H 1.09011 * 109.46678 * 59.99818 * 14 13 12 37 37 H 0.96997 * 120.00221 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.09316 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1911 2.6649 -0.0005 5 6 1.4922 4.0114 -0.0011 6 6 2.8144 4.4304 -0.0016 7 8 3.1080 5.7555 -0.0027 8 6 3.8465 3.4822 -0.0010 9 6 5.2542 3.9199 -0.0010 10 8 5.5218 5.1052 -0.0065 11 8 6.2440 3.0056 0.0001 12 6 7.6061 3.5087 0.0006 13 6 8.5842 2.3322 0.0012 14 6 10.0195 2.8623 0.0011 15 16 11.1767 1.4706 0.0025 16 6 12.7066 2.3448 0.0029 17 1 12.7114 3.4247 0.0019 18 6 13.9055 1.6453 0.0035 19 7 13.8996 0.3290 0.0043 20 14 15.5274 2.5721 0.0046 21 1 15.2626 4.0333 0.0042 22 1 16.3038 2.2097 1.2175 23 1 16.3052 2.2100 -1.2074 24 6 3.5348 2.1200 -0.0053 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.1596 2.3448 -0.0005 29 1 0.6961 4.7413 -0.0019 30 1 3.1927 6.1389 -0.8864 31 1 7.7694 4.1161 -0.8897 32 1 7.7683 4.1170 0.8903 33 1 8.4211 1.7244 0.8912 34 1 8.4219 1.7242 -0.8887 35 1 10.1824 3.4699 -0.8891 36 1 10.1822 3.4706 0.8909 37 1 14.7374 -0.1598 0.0050 38 1 4.3249 1.3837 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850290975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:45 Heat of formation + Delta-G solvation = -114.508863 kcal Electronic energy + Delta-G solvation = -21639.972869 eV Core-core repulsion = 18085.984981 eV Total energy + Delta-G solvation = -3553.987888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89353 -39.44710 -37.18622 -36.47713 -33.54698 -32.44138 -32.09298 -30.57050 -29.41728 -26.76219 -25.51890 -24.36044 -23.23038 -21.48272 -21.24015 -18.82864 -18.45747 -17.54877 -17.35504 -16.64347 -16.23876 -16.08332 -15.94324 -15.05057 -14.81564 -14.68459 -14.50300 -14.31636 -14.23743 -13.44703 -13.35761 -13.08106 -12.85906 -12.78264 -12.65792 -12.43062 -12.09229 -11.34378 -11.29126 -11.14252 -10.98771 -10.87797 -10.71520 -10.68056 -10.42867 -10.28090 -10.01898 -9.64373 -9.62162 -9.07912 -8.34475 -7.81612 -6.55697 -6.24324 -3.95183 0.16291 0.63723 1.00751 1.90475 2.24702 2.47884 3.12800 3.21095 3.22745 3.30260 3.54584 3.72592 4.19636 4.21262 4.34090 4.52368 4.53557 4.63302 4.82243 4.95335 5.11068 5.12316 5.13670 5.19469 5.29952 5.39789 5.44120 5.49469 5.59253 5.69454 5.78483 5.93783 6.04752 6.16699 6.41112 6.45885 6.67835 7.25725 7.60046 7.67091 8.35757 9.22201 10.83879 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002029 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.713776 B =13793.299911 C =15187.406139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.099 6.099 3 C -0.112 4.112 4 C -0.086 4.086 5 C -0.139 4.139 6 C 0.168 3.832 7 O -0.477 6.477 8 C -0.133 4.133 9 C 0.506 3.494 10 O -0.490 6.490 11 O -0.352 6.352 12 C 0.075 3.925 13 C -0.098 4.098 14 C -0.114 4.114 15 S -0.124 6.124 16 C -0.517 4.517 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.869 5.869 20 Si 0.920 3.080 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.025 4.025 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.398 0.602 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.267 0.733 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.142 3.418 -1.706 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.143 5.857 3 C -0.224 4.224 4 C -0.110 4.110 5 C -0.159 4.159 6 C 0.120 3.880 7 O -0.288 6.288 8 C -0.136 4.136 9 C 0.349 3.651 10 O -0.378 6.378 11 O -0.269 6.269 12 C 0.000 4.000 13 C -0.136 4.136 14 C -0.263 4.263 15 S 0.104 5.896 16 C -0.665 4.665 17 H 0.092 0.908 18 C -0.138 4.138 19 N -0.505 5.505 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.049 4.049 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.152 0.848 29 H 0.160 0.840 30 H 0.256 0.744 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -30.459 1.355 -1.107 30.509 hybrid contribution 0.556 3.175 -0.460 3.256 sum -29.903 4.530 -1.568 30.285 Atomic orbital electron populations 1.23736 0.94945 1.07485 1.05677 1.85828 1.06061 1.01371 1.92391 1.21696 0.96172 0.97674 1.06895 1.21273 0.98729 0.92409 0.98543 1.21281 0.95622 0.96058 1.02950 1.18444 0.90461 0.83684 0.95442 1.84785 1.92390 1.17976 1.33676 1.19555 0.90376 0.93873 1.09831 1.20767 0.86098 0.84371 0.73819 1.90873 1.84570 1.17686 1.44672 1.86525 1.17008 1.39599 1.83721 1.23300 0.76114 0.97897 1.02710 1.21292 0.91586 0.96397 1.04375 1.23179 0.96282 1.03455 1.03361 1.84661 0.99335 1.08714 1.96872 1.22740 0.90636 0.94646 1.58521 0.90780 1.25025 0.99159 0.95091 0.94559 1.70026 1.27441 1.05774 1.47229 0.86091 0.81777 0.79639 0.77891 1.19578 1.20545 1.20556 1.21084 0.95258 0.94610 0.93920 0.89606 0.89619 0.87080 0.84790 0.83988 0.74363 0.91046 0.91008 0.90281 0.90302 0.91722 0.91708 0.92304 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.14 101.05 0.92 0.37 16 2 S -0.10 -0.75 22.55 -107.50 -2.42 -3.17 16 3 C -0.11 -0.96 6.10 -39.15 -0.24 -1.20 16 4 C -0.09 -0.58 9.35 -39.32 -0.37 -0.95 16 5 C -0.14 -1.01 9.97 -39.51 -0.39 -1.40 16 6 C 0.17 1.66 6.72 -38.69 -0.26 1.40 16 7 O -0.48 -4.80 11.56 -40.83 -0.47 -5.28 16 8 C -0.13 -1.52 5.88 -104.88 -0.62 -2.14 16 9 C 0.51 7.11 7.89 34.47 0.27 7.38 16 10 O -0.49 -7.85 14.94 -26.61 -0.40 -8.25 16 11 O -0.35 -5.05 9.47 -40.62 -0.38 -5.44 16 12 C 0.07 1.10 5.48 37.16 0.20 1.31 16 13 C -0.10 -1.62 5.60 -26.73 -0.15 -1.77 16 14 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 15 S -0.12 -3.23 21.44 -107.50 -2.30 -5.54 16 16 C -0.52 -14.83 9.50 30.94 0.29 -14.54 16 17 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 18 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 19 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 20 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 C -0.03 -0.26 9.35 -38.94 -0.36 -0.62 16 25 H 0.09 0.25 7.74 -51.92 -0.40 -0.15 16 26 H 0.08 0.23 7.74 -51.92 -0.40 -0.17 16 27 H 0.11 0.28 8.14 -51.92 -0.42 -0.14 16 28 H 0.13 0.54 5.84 -52.49 -0.31 0.24 16 29 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 30 H 0.40 2.39 9.06 45.56 0.41 2.80 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 36 H 0.06 1.28 8.14 -51.91 -0.42 0.86 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.15 1.55 7.61 -52.49 -0.40 1.15 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -34.27 359.34 -9.46 -43.74 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.02 Total: -0.52 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.58 Total: -12.32 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.73 Total: -25.22 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.25 Total: -18.96 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -4.73 Total: -8.71 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.27 -9.46 -43.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850290975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.771 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds