Wall clock time and date at job start Tue Mar 31 2020 15:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76202 * 102.99936 * 2 1 4 4 C 1.39190 * 119.92959 * 359.97438 * 3 2 1 5 5 C 1.37979 * 120.32660 * 180.02562 * 4 3 2 6 6 C 1.38697 * 120.18335 * 0.02562 * 5 4 3 7 7 O 1.35728 * 120.07415 * 179.97438 * 6 5 4 8 8 C 1.40151 * 119.84764 * 359.97158 * 6 5 4 9 9 C 1.47416 * 120.15678 * 180.02562 * 8 6 5 10 10 O 1.21511 * 119.99532 * 359.72790 * 9 8 6 11 11 O 1.34749 * 119.99675 * 179.97438 * 9 8 6 12 12 C 1.45208 * 116.99513 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46660 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47181 * 179.97438 * 13 12 11 15 15 S 1.80994 * 109.47488 * 179.97438 * 14 13 12 16 16 C 1.76204 * 100.00009 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99933 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99731 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00345 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99653 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47254 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47399 * 119.99799 * 20 18 16 23 23 H 1.48502 * 109.46934 * 239.99513 * 20 18 16 24 24 C 1.38454 * 119.92607 * 180.25369 * 3 2 1 25 25 H 1.09000 * 109.47419 * 299.99862 * 1 2 3 26 26 H 1.09004 * 109.47005 * 60.00232 * 1 2 3 27 27 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.83365 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.90958 * 179.97438 * 5 4 3 30 30 H 0.96704 * 114.00212 * 270.01485 * 7 6 5 31 31 H 1.09003 * 109.46907 * 299.99907 * 12 11 9 32 32 H 1.08995 * 109.46854 * 60.00352 * 12 11 9 33 33 H 1.08999 * 109.47692 * 299.99922 * 13 12 11 34 34 H 1.09000 * 109.47887 * 60.00208 * 13 12 11 35 35 H 1.08999 * 109.46957 * 300.00634 * 14 13 12 36 36 H 1.09011 * 109.46678 * 59.99818 * 14 13 12 37 37 H 0.96997 * 120.00221 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.09316 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1911 2.6649 -0.0005 5 6 1.4922 4.0114 -0.0011 6 6 2.8144 4.4304 -0.0016 7 8 3.1080 5.7555 -0.0027 8 6 3.8465 3.4822 -0.0010 9 6 5.2542 3.9199 -0.0010 10 8 5.5218 5.1052 -0.0065 11 8 6.2440 3.0056 0.0001 12 6 7.6061 3.5087 0.0006 13 6 8.5842 2.3322 0.0012 14 6 10.0195 2.8623 0.0011 15 16 11.1767 1.4706 0.0025 16 6 12.7066 2.3448 0.0029 17 1 12.7114 3.4247 0.0019 18 6 13.9055 1.6453 0.0035 19 7 13.8996 0.3290 0.0043 20 14 15.5274 2.5721 0.0046 21 1 15.2626 4.0333 0.0042 22 1 16.3038 2.2097 1.2175 23 1 16.3052 2.2100 -1.2074 24 6 3.5348 2.1200 -0.0053 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.1596 2.3448 -0.0005 29 1 0.6961 4.7413 -0.0019 30 1 3.1927 6.1389 -0.8864 31 1 7.7694 4.1161 -0.8897 32 1 7.7683 4.1170 0.8903 33 1 8.4211 1.7244 0.8912 34 1 8.4219 1.7242 -0.8887 35 1 10.1824 3.4699 -0.8891 36 1 10.1822 3.4706 0.8909 37 1 14.7374 -0.1598 0.0050 38 1 4.3249 1.3837 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850290975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:44 Heat of formation + Delta-G solvation = -134.790909 kcal Electronic energy + Delta-G solvation = -21640.852364 eV Core-core repulsion = 18085.984981 eV Total energy + Delta-G solvation = -3554.867383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.84417 -40.31609 -37.98574 -37.53639 -34.95332 -34.59540 -32.83390 -31.20228 -29.78106 -28.25603 -27.50899 -25.26906 -23.92267 -22.80110 -22.26809 -19.72073 -19.47865 -19.18152 -18.44446 -17.79581 -17.13667 -16.91025 -16.83167 -16.64761 -16.12684 -15.98673 -15.51501 -15.23484 -14.89121 -14.64200 -14.24400 -14.17783 -13.83573 -13.69919 -13.49628 -13.43100 -13.22943 -13.05390 -12.97010 -12.63478 -12.42367 -12.41399 -12.11551 -11.60729 -11.55983 -11.32456 -11.20018 -11.16919 -10.66775 -10.37263 -10.32266 -8.69376 -8.40492 -8.39114 -6.15799 -0.58421 -0.01964 0.48789 1.24064 1.33478 1.38133 1.39112 1.46984 1.51444 1.80587 2.25817 2.38807 2.95379 3.07607 3.25810 3.42782 3.69168 3.81619 3.94154 3.95137 4.09392 4.15764 4.28238 4.30105 4.32704 4.34626 4.46994 4.65467 4.69840 4.78547 4.91083 4.96988 4.98594 5.01634 5.13813 5.32795 5.39386 5.45354 6.17185 6.57463 6.68938 7.03380 8.70521 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002029 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.713776 B =13793.299911 C =15187.406139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.145 6.145 3 C -0.114 4.114 4 C -0.071 4.071 5 C -0.129 4.129 6 C 0.161 3.839 7 O -0.493 6.493 8 C -0.157 4.157 9 C 0.505 3.495 10 O -0.516 6.516 11 O -0.355 6.355 12 C 0.082 3.918 13 C -0.086 4.086 14 C -0.091 4.091 15 S -0.185 6.185 16 C -0.539 4.539 17 H 0.074 0.926 18 C 0.015 3.985 19 N -0.906 5.906 20 Si 0.996 3.004 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.037 4.037 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.170 0.830 29 H 0.173 0.827 30 H 0.412 0.588 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.272 0.728 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.434 4.367 -1.809 33.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.097 5.903 3 C -0.226 4.226 4 C -0.095 4.095 5 C -0.149 4.149 6 C 0.112 3.888 7 O -0.307 6.307 8 C -0.161 4.161 9 C 0.350 3.650 10 O -0.406 6.406 11 O -0.272 6.272 12 C 0.007 3.993 13 C -0.124 4.124 14 C -0.240 4.240 15 S 0.044 5.956 16 C -0.687 4.687 17 H 0.092 0.908 18 C -0.190 4.190 19 N -0.543 5.543 20 Si 0.818 3.182 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.060 4.060 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.142 0.858 28 H 0.187 0.813 29 H 0.191 0.809 30 H 0.273 0.727 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -32.769 2.295 -1.221 32.872 hybrid contribution 1.067 2.844 -0.434 3.069 sum -31.702 5.139 -1.655 32.158 Atomic orbital electron populations 1.23867 0.90843 1.08868 1.07114 1.86035 1.10636 1.01247 1.92335 1.21795 0.95852 0.98439 1.06525 1.21695 0.99896 0.91772 0.96093 1.21582 0.94998 0.96922 1.01381 1.18677 0.91163 0.83324 0.95610 1.84736 1.92553 1.18187 1.35178 1.19544 0.89063 0.94877 1.12599 1.21291 0.86865 0.83967 0.72829 1.90845 1.84980 1.18516 1.46281 1.86519 1.16847 1.39933 1.83886 1.23066 0.76356 0.96784 1.03101 1.21105 0.89898 0.96949 1.04476 1.23059 0.96406 1.00801 1.03726 1.84646 1.00928 1.13013 1.97058 1.23083 0.91856 0.94857 1.58918 0.90770 1.26081 1.03186 0.96037 0.93738 1.70152 1.28725 1.07491 1.47913 0.84944 0.76573 0.78397 0.78314 1.18715 1.19656 1.19616 1.21031 0.96165 0.93954 0.94890 0.88194 0.88023 0.85780 0.81318 0.80942 0.72719 0.90481 0.90861 0.90330 0.90144 0.91196 0.91350 0.91887 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 9.14 113.37 1.04 0.47 16 2 S -0.14 -2.02 22.55 -56.49 -1.27 -3.29 16 3 C -0.11 -1.79 6.10 22.55 0.14 -1.65 16 4 C -0.07 -0.74 9.35 22.44 0.21 -0.53 16 5 C -0.13 -1.49 9.97 22.32 0.22 -1.27 16 6 C 0.16 3.00 6.72 22.84 0.15 3.15 16 7 O -0.49 -9.53 11.56 -69.54 -0.80 -10.34 16 8 C -0.16 -3.62 5.88 -20.03 -0.12 -3.74 16 9 C 0.50 14.48 7.89 70.24 0.55 15.03 16 10 O -0.52 -16.79 14.94 26.82 0.40 -16.39 16 11 O -0.35 -10.40 9.47 -56.60 -0.54 -10.94 16 12 C 0.08 2.43 5.48 71.98 0.39 2.82 16 13 C -0.09 -2.84 5.60 30.59 0.17 -2.67 16 14 C -0.09 -3.68 5.67 71.98 0.41 -3.27 16 15 S -0.19 -9.89 21.44 -56.49 -1.21 -11.10 16 16 C -0.54 -31.33 9.50 67.95 0.65 -30.68 16 17 H 0.07 4.16 7.80 -2.91 -0.02 4.13 16 18 C 0.01 0.84 5.49 84.86 0.47 1.30 16 19 N -0.91 -54.88 13.22 21.65 0.29 -54.60 16 20 Si 1.00 44.27 29.55 68.60 2.03 46.29 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 C -0.04 -0.75 9.35 22.69 0.21 -0.54 16 25 H 0.10 0.18 7.74 -2.39 -0.02 0.16 16 26 H 0.10 0.14 7.74 -2.39 -0.02 0.12 16 27 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.17 0.55 5.84 -2.91 -0.02 0.53 16 29 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 30 H 0.41 4.70 9.06 -74.05 -0.67 4.03 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.14 3.06 7.61 -2.91 -0.02 3.04 16 Total: -1.00 -75.49 359.34 3.80 -71.69 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.42 Total: 10.25 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.49 Total: -21.57 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.29 Total: -54.60 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.94 Total: -37.67 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -11.91 SS G_CDS: -2.49 Total: -14.39 kcal Total: -75.49 3.80 -71.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850290975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.105 kcal (2) G-P(sol) polarization free energy of solvation -75.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds