Wall clock time and date at job start Tue Mar 31 2020 15:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76200 * 100.00385 * 2 1 4 4 C 1.36465 * 125.11376 * 180.02562 * 3 2 1 5 5 C 1.36652 * 114.85519 * 179.74294 * 4 3 2 6 6 C 1.37253 * 114.61544 * 0.50458 * 5 4 3 7 7 C 1.40735 * 125.20907 * 179.78766 * 6 5 4 8 8 C 1.36345 * 119.99754 * 225.74840 * 7 6 5 9 9 C 1.40661 * 120.00355 * 11.90949 * 8 7 6 10 10 O 1.21799 * 119.99701 * 6.72612 * 9 8 7 11 11 O 1.35074 * 120.00123 * 186.71730 * 9 8 7 12 12 C 1.42904 * 116.99852 * 180.02562 * 11 9 8 13 13 C 1.53010 * 109.47118 * 180.02562 * 12 11 9 14 14 O 1.42896 * 109.46696 * 65.00125 * 13 12 11 15 15 C 1.42906 * 113.99825 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47145 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00402 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99940 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 120.00121 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46849 * 89.99900 * 20 18 16 22 22 H 1.48497 * 109.46809 * 209.99832 * 20 18 16 23 23 H 1.48500 * 109.46813 * 329.99757 * 20 18 16 24 24 S 1.75825 * 125.10609 * 0.02562 * 3 2 1 25 25 H 1.09004 * 109.47125 * 300.00430 * 1 2 3 26 26 H 1.08999 * 109.46885 * 60.00014 * 1 2 3 27 27 H 1.08994 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.07996 * 122.56645 * 0.03958 * 4 3 2 29 29 H 1.07996 * 122.69594 * 180.31002 * 5 4 3 30 30 H 1.08001 * 120.00218 * 45.74033 * 7 6 5 31 31 H 1.08004 * 119.99654 * 191.91865 * 8 7 6 32 32 H 1.09001 * 109.46985 * 299.99893 * 12 11 9 33 33 H 1.08999 * 109.46997 * 60.00660 * 12 11 9 34 34 H 1.08997 * 109.46841 * 184.99663 * 13 12 11 35 35 H 1.08994 * 109.46525 * 305.00217 * 13 12 11 36 36 H 1.09000 * 109.46680 * 299.99606 * 15 14 13 37 37 H 1.08993 * 109.47303 * 59.99287 * 15 14 13 38 38 H 0.96998 * 119.99663 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 6 3.3517 2.3143 -0.0005 5 6 3.3457 3.6808 -0.0060 6 6 2.0954 4.2470 0.0009 7 6 1.8305 5.6292 0.0016 8 6 0.8979 6.1442 0.8525 9 6 0.3830 5.3521 1.8946 10 8 0.8561 4.2513 2.1136 11 8 -0.6360 5.8122 2.6525 12 6 -1.1087 4.9550 3.6936 13 6 -2.2561 5.6413 4.4377 14 8 -3.3654 5.8081 3.5526 15 6 -4.4965 6.4436 4.1516 16 6 -5.6010 6.5666 3.1339 17 1 -5.4539 6.1970 2.1298 18 6 -6.7995 7.1512 3.4845 19 7 -6.9789 7.6009 4.7073 20 14 -8.1685 7.3044 2.2226 21 1 -9.0279 6.0945 2.2753 22 1 -8.9868 8.5064 2.5238 23 1 -7.5788 7.4342 0.8659 24 16 0.8752 2.9809 0.0006 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.2643 1.7369 -0.0016 29 1 4.2519 4.2682 -0.0119 30 1 2.3661 6.2820 -0.6718 31 1 0.5544 7.1603 0.7262 32 1 -1.4644 4.0200 3.2609 33 1 -0.2963 4.7474 4.3901 34 1 -2.5575 5.0271 5.2863 35 1 -1.9258 6.6168 4.7943 36 1 -4.8446 5.8464 4.9945 37 1 -4.2126 7.4358 4.5020 38 1 -7.8220 8.0125 4.9538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860289365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:58 Heat of formation + Delta-G solvation = -70.405986 kcal Electronic energy + Delta-G solvation = -22264.871362 eV Core-core repulsion = 18712.795918 eV Total energy + Delta-G solvation = -3552.075444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54049 -38.08356 -37.08514 -36.10427 -34.02412 -32.77687 -30.35930 -29.64689 -28.81701 -26.96184 -25.50235 -23.51964 -22.39630 -21.81686 -20.27425 -20.09854 -18.37257 -17.33085 -16.64884 -16.45134 -16.20973 -15.84223 -15.29074 -15.04932 -14.68585 -14.53344 -14.32346 -14.12476 -13.87213 -13.59279 -13.23175 -13.13987 -13.01305 -12.51782 -12.33081 -12.32082 -11.89437 -11.44788 -11.42825 -10.94016 -10.86501 -10.78634 -10.67339 -10.57281 -10.28875 -10.10561 -10.00795 -9.20264 -9.13715 -8.88216 -8.22314 -8.20755 -7.46673 -6.13056 -4.14770 -0.10057 1.07381 1.15022 1.35907 1.85096 2.18748 2.48825 3.05551 3.09637 3.28952 3.33915 3.39432 4.31656 4.65955 4.70969 4.73337 4.74193 4.89116 5.06701 5.19216 5.23493 5.26969 5.29152 5.35338 5.48259 5.55240 5.77273 5.78582 5.89264 5.99266 6.08635 6.14531 6.24673 6.65546 7.05107 7.39200 7.76923 7.91522 8.11765 8.52094 8.97909 9.50013 10.98545 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002554 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.416667 B =10961.879822 C =11652.087758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 S -0.044 6.044 3 C -0.216 4.216 4 C -0.128 4.128 5 C -0.087 4.087 6 C -0.195 4.195 7 C 0.027 3.973 8 C -0.200 4.200 9 C 0.479 3.521 10 O -0.502 6.502 11 O -0.334 6.334 12 C 0.075 3.925 13 C 0.062 3.938 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.515 4.515 17 H 0.066 0.934 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.271 1.271 24 S 0.230 5.770 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.631 -10.139 -10.129 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 S 0.194 5.806 3 C -0.447 4.447 4 C -0.165 4.165 5 C -0.119 4.119 6 C -0.317 4.317 7 C 0.006 3.994 8 C -0.222 4.222 9 C 0.326 3.674 10 O -0.394 6.394 11 O -0.250 6.250 12 C 0.001 3.999 13 C -0.015 4.015 14 O -0.311 6.311 15 C 0.120 3.880 16 C -0.553 4.553 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.196 1.196 24 S 0.498 5.502 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.169 0.831 31 H 0.168 0.832 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.675 -11.551 -10.125 25.757 hybrid contribution -0.134 1.357 0.067 1.365 sum 20.541 -10.195 -10.058 25.040 Atomic orbital electron populations 1.23782 0.95042 1.07810 1.06654 1.85294 1.06190 0.97177 1.91934 1.27035 1.01458 1.01635 1.14538 1.19805 0.96049 0.94122 1.06510 1.20413 0.96375 0.93919 1.01195 1.22204 0.97235 0.97500 1.14713 1.20775 0.92307 0.91784 0.94507 1.21607 1.01313 1.02692 0.96636 1.19940 0.78585 0.85299 0.83554 1.91053 1.58803 1.20847 1.68718 1.86344 1.47371 1.47683 1.43555 1.22763 0.95534 0.93572 0.88079 1.22322 0.87379 0.99343 0.92499 1.87912 1.23902 1.81521 1.37755 1.20232 0.82113 0.91405 0.94230 1.21046 0.97170 1.39045 0.98038 0.91532 1.24953 0.98519 0.95211 0.95824 1.69962 1.25643 1.40127 1.18067 0.86329 0.81196 0.77615 0.81317 1.20457 1.21039 1.19588 1.84157 1.06469 0.92909 1.66706 0.89029 0.89371 0.86777 0.84213 0.83918 0.83091 0.83186 0.90988 0.90836 0.92121 0.93256 0.97647 0.97501 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.47 101.05 0.96 -0.39 16 2 S -0.04 -0.44 22.88 -107.50 -2.46 -2.90 16 3 C -0.22 -2.49 6.71 30.09 0.20 -2.29 16 4 C -0.13 -1.36 10.15 -40.79 -0.41 -1.77 16 5 C -0.09 -0.87 10.12 -40.51 -0.41 -1.28 16 6 C -0.20 -2.20 4.47 -39.00 -0.17 -2.38 16 7 C 0.03 0.25 9.85 -39.32 -0.39 -0.13 16 8 C -0.20 -2.30 9.94 -39.35 -0.39 -2.69 16 9 C 0.48 7.18 7.18 31.65 0.23 7.41 16 10 O -0.50 -8.00 11.66 -19.50 -0.23 -8.23 16 11 O -0.33 -5.72 10.07 -44.64 -0.45 -6.17 16 12 C 0.07 1.22 5.76 37.16 0.21 1.44 16 13 C 0.06 1.16 6.32 37.16 0.23 1.40 16 14 O -0.39 -9.59 10.29 -40.08 -0.41 -10.00 16 15 C 0.19 5.35 5.69 36.00 0.20 5.56 16 16 C -0.51 -15.24 9.43 -34.44 -0.32 -15.56 16 17 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 20 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 S 0.23 2.84 18.29 -107.50 -1.97 0.87 16 25 H 0.09 0.84 8.00 -51.91 -0.42 0.42 16 26 H 0.09 0.69 8.00 -51.92 -0.42 0.28 16 27 H 0.11 0.70 8.14 -51.92 -0.42 0.27 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 33 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 359.20 15.07 5.41 5.41 Total: -1.00 -34.00 359.20 -9.57 -43.57 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -5.02 Total: -4.03 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.16 Total: -9.17 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.09 Total: -24.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -4.43 Total: -2.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.00 -9.57 -43.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860289365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.840 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds