Wall clock time and date at job start Tue Mar 31 2020 15:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76200 * 100.00385 * 2 1 4 4 C 1.36465 * 125.11376 * 180.02562 * 3 2 1 5 5 C 1.36652 * 114.85519 * 179.74294 * 4 3 2 6 6 C 1.37253 * 114.61544 * 0.50458 * 5 4 3 7 7 C 1.40735 * 125.20907 * 179.78766 * 6 5 4 8 8 C 1.36345 * 119.99754 * 225.74840 * 7 6 5 9 9 C 1.40661 * 120.00355 * 11.90949 * 8 7 6 10 10 O 1.21799 * 119.99701 * 6.72612 * 9 8 7 11 11 O 1.35074 * 120.00123 * 186.71730 * 9 8 7 12 12 C 1.42904 * 116.99852 * 180.02562 * 11 9 8 13 13 C 1.53010 * 109.47118 * 180.02562 * 12 11 9 14 14 O 1.42896 * 109.46696 * 65.00125 * 13 12 11 15 15 C 1.42906 * 113.99825 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47145 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00402 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99940 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 120.00121 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46849 * 89.99900 * 20 18 16 22 22 H 1.48497 * 109.46809 * 209.99832 * 20 18 16 23 23 H 1.48500 * 109.46813 * 329.99757 * 20 18 16 24 24 S 1.75825 * 125.10609 * 0.02562 * 3 2 1 25 25 H 1.09004 * 109.47125 * 300.00430 * 1 2 3 26 26 H 1.08999 * 109.46885 * 60.00014 * 1 2 3 27 27 H 1.08994 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.07996 * 122.56645 * 0.03958 * 4 3 2 29 29 H 1.07996 * 122.69594 * 180.31002 * 5 4 3 30 30 H 1.08001 * 120.00218 * 45.74033 * 7 6 5 31 31 H 1.08004 * 119.99654 * 191.91865 * 8 7 6 32 32 H 1.09001 * 109.46985 * 299.99893 * 12 11 9 33 33 H 1.08999 * 109.46997 * 60.00660 * 12 11 9 34 34 H 1.08997 * 109.46841 * 184.99663 * 13 12 11 35 35 H 1.08994 * 109.46525 * 305.00217 * 13 12 11 36 36 H 1.09000 * 109.46680 * 299.99606 * 15 14 13 37 37 H 1.08993 * 109.47303 * 59.99287 * 15 14 13 38 38 H 0.96998 * 119.99663 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 6 3.3517 2.3143 -0.0005 5 6 3.3457 3.6808 -0.0060 6 6 2.0954 4.2470 0.0009 7 6 1.8305 5.6292 0.0016 8 6 0.8979 6.1442 0.8525 9 6 0.3830 5.3521 1.8946 10 8 0.8561 4.2513 2.1136 11 8 -0.6360 5.8122 2.6525 12 6 -1.1087 4.9550 3.6936 13 6 -2.2561 5.6413 4.4377 14 8 -3.3654 5.8081 3.5526 15 6 -4.4965 6.4436 4.1516 16 6 -5.6010 6.5666 3.1339 17 1 -5.4539 6.1970 2.1298 18 6 -6.7995 7.1512 3.4845 19 7 -6.9789 7.6009 4.7073 20 14 -8.1685 7.3044 2.2226 21 1 -9.0279 6.0945 2.2753 22 1 -8.9868 8.5064 2.5238 23 1 -7.5788 7.4342 0.8659 24 16 0.8752 2.9809 0.0006 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 4.2643 1.7369 -0.0016 29 1 4.2519 4.2682 -0.0119 30 1 2.3661 6.2820 -0.6718 31 1 0.5544 7.1603 0.7262 32 1 -1.4644 4.0200 3.2609 33 1 -0.2963 4.7474 4.3901 34 1 -2.5575 5.0271 5.2863 35 1 -1.9258 6.6168 4.7943 36 1 -4.8446 5.8464 4.9945 37 1 -4.2126 7.4358 4.5020 38 1 -7.8220 8.0125 4.9538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860289365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:57 Heat of formation + Delta-G solvation = -89.839338 kcal Electronic energy + Delta-G solvation = -22265.714055 eV Core-core repulsion = 18712.795918 eV Total energy + Delta-G solvation = -3552.918137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67229 -39.12357 -38.54779 -37.48966 -34.96255 -34.90040 -31.80938 -30.44067 -29.74439 -28.98266 -26.44155 -24.68198 -24.40095 -23.16177 -21.28110 -20.89191 -19.35676 -18.73326 -18.32526 -17.97455 -17.27999 -16.88003 -16.86772 -16.40458 -16.22992 -15.83207 -15.49800 -15.05993 -14.86940 -14.54794 -14.40141 -14.35288 -13.99751 -13.83736 -13.51452 -13.30894 -13.11548 -13.07564 -12.92179 -12.70589 -12.44917 -12.28521 -12.00604 -11.70999 -11.62548 -11.38278 -11.29421 -10.98706 -10.90058 -10.29701 -10.00666 -9.13524 -8.33831 -8.27678 -6.46352 -0.95720 0.23515 0.37957 0.50827 1.01667 1.39422 1.39995 1.42282 1.54483 1.64829 1.95104 2.13324 2.33431 3.00027 3.04827 3.84279 3.93073 3.98772 4.04277 4.09005 4.10515 4.30835 4.39965 4.41890 4.49384 4.54040 4.64616 4.69870 4.78534 4.83173 4.98483 5.11195 5.15558 5.28342 5.47116 5.51146 5.52868 5.93142 6.47761 6.76109 6.80159 7.25331 8.78512 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002554 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.416667 B =10961.879822 C =11652.087758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 S -0.047 6.047 3 C -0.223 4.223 4 C -0.136 4.136 5 C -0.077 4.077 6 C -0.213 4.213 7 C 0.058 3.942 8 C -0.231 4.231 9 C 0.473 3.527 10 O -0.518 6.518 11 O -0.357 6.357 12 C 0.082 3.918 13 C 0.055 3.945 14 O -0.409 6.409 15 C 0.208 3.792 16 C -0.551 4.551 17 H 0.060 0.940 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.983 3.017 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.265 1.265 24 S 0.176 5.824 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.159 0.841 29 H 0.176 0.824 30 H 0.198 0.802 31 H 0.166 0.834 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.055 0.945 36 H -0.009 1.009 37 H -0.011 1.011 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.673 -10.078 -11.569 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 S 0.192 5.808 3 C -0.454 4.454 4 C -0.173 4.173 5 C -0.109 4.109 6 C -0.334 4.334 7 C 0.038 3.962 8 C -0.254 4.254 9 C 0.322 3.678 10 O -0.412 6.412 11 O -0.274 6.274 12 C 0.008 3.992 13 C -0.022 4.022 14 O -0.329 6.329 15 C 0.133 3.867 16 C -0.588 4.588 17 H 0.078 0.922 18 C -0.191 4.191 19 N -0.569 5.569 20 Si 0.806 3.194 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.189 1.189 24 S 0.444 5.556 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.155 0.845 28 H 0.176 0.824 29 H 0.193 0.807 30 H 0.215 0.785 31 H 0.184 0.816 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.009 0.991 37 H 0.007 0.993 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.742 -11.505 -11.559 27.179 hybrid contribution -0.293 1.226 0.523 1.365 sum 21.449 -10.279 -11.036 26.221 Atomic orbital electron populations 1.23837 0.93836 1.09125 1.06201 1.85224 1.07584 0.96325 1.91697 1.27269 1.01445 1.02095 1.14610 1.20198 0.96379 0.94809 1.05896 1.20809 0.97027 0.93950 0.99068 1.22494 0.97116 0.97973 1.15811 1.21282 0.90341 0.91379 0.93169 1.21717 1.03184 1.03319 0.97134 1.20553 0.77839 0.85526 0.83839 1.91045 1.59282 1.21563 1.69284 1.86333 1.48606 1.48304 1.44177 1.22650 0.95342 0.92668 0.88572 1.22636 0.86355 1.00405 0.92817 1.87861 1.24519 1.81161 1.39346 1.19873 0.82993 0.90346 0.93472 1.21376 0.98716 1.40483 0.98262 0.92186 1.25960 1.00988 0.94049 0.98134 1.70062 1.26724 1.40116 1.19962 0.85183 0.77543 0.78286 0.78405 1.19222 1.19754 1.18912 1.84338 1.08378 0.94829 1.68063 0.90202 0.89107 0.84539 0.82380 0.80654 0.78522 0.81641 0.91754 0.88216 0.90321 0.92709 0.99082 0.99325 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.47 113.37 1.07 -1.54 16 2 S -0.05 -0.90 22.88 -56.49 -1.29 -2.19 16 3 C -0.22 -5.01 6.71 67.41 0.45 -4.56 16 4 C -0.14 -2.63 10.15 21.48 0.22 -2.41 16 5 C -0.08 -1.34 10.12 21.67 0.22 -1.12 16 6 C -0.21 -4.43 4.47 22.65 0.10 -4.33 16 7 C 0.06 0.96 9.85 22.44 0.22 1.18 16 8 C -0.23 -5.06 9.94 22.42 0.22 -4.84 16 9 C 0.47 14.20 7.18 68.41 0.49 14.69 16 10 O -0.52 -16.55 11.66 18.85 0.22 -16.33 16 11 O -0.36 -12.45 10.07 -56.98 -0.57 -13.02 16 12 C 0.08 2.71 5.76 71.99 0.41 3.12 16 13 C 0.05 2.08 6.32 71.99 0.45 2.53 16 14 O -0.41 -20.64 10.29 -144.34 -1.49 -22.12 16 15 C 0.21 11.85 5.69 71.23 0.41 12.25 16 16 C -0.55 -33.27 9.43 25.60 0.24 -33.03 16 17 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 18 C 0.01 0.42 5.46 84.65 0.46 0.89 16 19 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 20 Si 0.98 44.45 29.54 68.60 2.03 46.48 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 24 S 0.18 4.36 18.29 -56.49 -1.03 3.33 16 25 H 0.08 1.51 8.00 -2.39 -0.02 1.49 16 26 H 0.09 1.43 8.00 -2.40 -0.02 1.41 16 27 H 0.14 1.53 8.14 -2.40 -0.02 1.51 16 28 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 33 H 0.10 2.74 8.13 -2.39 -0.02 2.72 16 34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 37 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -74.50 359.20 4.18 -70.32 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 1.06 Total: 6.37 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.98 Total: -17.17 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.28 Total: -55.65 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -1.84 Total: -51.48 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.33 Total: 1.14 kcal Total: -74.50 4.18 -70.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860289365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.518 kcal (2) G-P(sol) polarization free energy of solvation -74.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds