Wall clock time and date at job start Tue Mar 31 2020 15:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35688 * 116.99529 * 2 1 4 4 N 1.32267 * 119.67990 * 0.24701 * 3 2 1 5 5 C 1.31933 * 121.65787 * 180.28608 * 4 3 2 6 6 C 1.38174 * 120.81991 * 359.75228 * 5 4 3 7 7 Br 1.89103 * 120.36410 * 180.02562 * 6 5 4 8 8 C 1.38855 * 119.26853 * 359.97438 * 6 5 4 9 9 C 1.38414 * 118.47784 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.43950 * 180.02562 * 9 8 6 11 11 N 1.46905 * 109.47066 * 260.00216 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.46700 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46820 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00070 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99993 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00130 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47108 * 89.99504 * 19 17 15 21 21 H 1.48498 * 109.47097 * 209.99712 * 19 17 15 22 22 H 1.48499 * 109.46508 * 329.99366 * 19 17 15 23 23 H 1.09002 * 109.47338 * 59.99901 * 1 2 3 24 24 H 1.09007 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47313 * 299.99470 * 1 2 3 26 26 H 1.08002 * 119.58986 * 179.73238 * 5 4 3 27 27 H 1.08005 * 120.75747 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47558 * 140.00380 * 10 9 8 29 29 H 1.08998 * 109.47216 * 20.00042 * 10 9 8 30 30 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 31 31 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 32 32 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 33 33 H 1.08995 * 109.46615 * 299.99641 * 13 12 11 34 34 H 1.08996 * 109.46939 * 60.00272 * 13 12 11 35 35 H 1.08993 * 109.47740 * 299.99810 * 14 13 12 36 36 H 1.09005 * 109.47573 * 59.99976 * 14 13 12 37 37 H 0.96999 * 120.00009 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3183 2.3142 0.0050 5 6 1.8762 3.5098 -0.0005 6 6 3.2508 3.6495 -0.0065 7 35 4.0368 5.3694 -0.0134 8 6 4.0487 2.5130 -0.0062 9 6 3.4322 1.2738 0.0006 10 6 4.2554 0.0116 0.0018 11 7 4.3160 -0.5348 -1.3606 12 6 5.1118 -1.7690 -1.3979 13 6 5.1524 -2.3065 -2.8299 14 6 5.9818 -3.5915 -2.8688 15 6 6.0212 -4.1213 -4.2791 16 1 5.5066 -3.5939 -5.0686 17 6 6.7152 -5.2788 -4.5615 18 7 6.7492 -5.7414 -5.7922 19 14 7.6060 -6.1906 -3.1960 20 1 6.6883 -7.1849 -2.5842 21 1 8.7897 -6.8895 -3.7577 22 1 8.0480 -5.2222 -2.1607 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.2506 4.3902 -0.0005 27 1 5.1257 2.5943 -0.0104 28 1 3.7972 -0.7206 0.6667 29 1 5.2641 0.2359 0.3484 30 1 4.6778 0.1489 -2.0085 31 1 6.1266 -1.5573 -1.0608 32 1 4.6591 -2.5131 -0.7428 33 1 4.1378 -2.5180 -3.1673 34 1 5.6054 -1.5621 -3.4846 35 1 6.9963 -3.3797 -2.5314 36 1 5.5292 -4.3362 -2.2139 37 1 7.2371 -6.5558 -5.9909 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865448466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:00 Heat of formation + Delta-G solvation = -31.486170 kcal Electronic energy + Delta-G solvation = -19161.958515 eV Core-core repulsion = 15984.639250 eV Total energy + Delta-G solvation = -3177.319266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.86571 -38.98244 -37.91063 -35.70995 -34.28593 -33.65645 -32.44403 -30.37739 -28.88976 -28.09622 -26.36305 -24.10936 -23.71973 -22.76649 -21.77448 -19.44884 -18.91161 -18.47736 -17.11721 -16.86962 -16.47814 -16.38749 -15.77163 -15.53314 -15.31722 -14.81618 -14.76382 -14.55722 -14.43324 -14.02992 -13.56132 -13.27336 -12.97942 -12.66257 -12.65663 -12.51269 -12.43693 -11.78060 -11.72392 -11.58899 -11.50118 -11.42568 -11.28499 -10.80520 -10.75325 -10.74433 -9.44431 -9.29942 -8.28332 -6.32778 -0.16233 -0.00487 0.51281 1.37450 1.39402 1.51636 2.09697 2.37799 2.45095 3.07042 3.12539 3.33496 3.69723 3.70599 3.82948 4.12268 4.26809 4.34360 4.42468 4.43729 4.44245 4.65321 4.71611 4.74907 4.78296 4.90413 4.92663 5.01026 5.14130 5.16816 5.53132 5.63398 5.67899 6.05012 6.15099 6.30857 6.45385 6.61037 6.75889 7.31853 8.88870 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.002426 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.303995 B =11540.174634 C =12562.377526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.341 3.659 4 N -0.547 5.547 5 C 0.172 3.828 6 C -0.190 4.190 7 Br -0.023 7.023 8 C -0.005 4.005 9 C -0.156 4.156 10 C 0.116 3.884 11 N -0.691 5.691 12 C 0.073 3.927 13 C -0.090 4.090 14 C -0.009 4.009 15 C -0.534 4.534 16 H 0.027 0.973 17 C 0.000 4.000 18 N -0.955 5.955 19 Si 0.956 3.044 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.243 1.243 23 H 0.056 0.944 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.189 0.811 27 H 0.167 0.833 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.342 0.658 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.019 0.981 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.948 24.972 19.535 32.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.209 6.209 3 C 0.161 3.839 4 N -0.272 5.272 5 C 0.014 3.986 6 C -0.272 4.272 7 Br 0.061 6.939 8 C -0.032 4.032 9 C -0.160 4.160 10 C -0.013 4.013 11 N -0.322 5.322 12 C -0.056 4.056 13 C -0.129 4.129 14 C -0.047 4.047 15 C -0.572 4.572 16 H 0.046 0.954 17 C -0.197 4.197 18 N -0.596 5.596 19 Si 0.779 3.221 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.166 1.166 23 H 0.075 0.925 24 H 0.133 0.867 25 H 0.083 0.917 26 H 0.206 0.794 27 H 0.185 0.815 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.159 0.841 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.019 24.755 19.500 33.067 hybrid contribution 1.527 -0.521 -0.199 1.626 sum -8.492 24.234 19.302 32.124 Atomic orbital electron populations 1.23078 0.75960 1.04526 1.02369 1.86369 1.24124 1.23993 1.86427 1.19998 0.89482 0.84955 0.89444 1.67538 1.40336 0.98742 1.20555 1.22848 0.91246 0.94523 0.90029 1.22744 0.96402 0.93304 1.14793 1.96755 1.82239 1.17042 1.97894 1.21567 1.01634 0.88996 0.91016 1.19912 0.91269 0.96443 1.08396 1.20605 0.97469 0.92133 0.91045 1.60419 1.57251 1.07331 1.07200 1.21874 0.95180 0.91671 0.96840 1.21256 0.99297 0.96641 0.95665 1.19485 0.96071 0.94693 0.94487 1.21542 1.31819 1.08994 0.94877 0.95432 1.26104 0.97098 0.98213 0.98240 1.70087 1.44416 1.23482 1.21583 0.85577 0.78172 0.78984 0.79407 1.19146 1.21046 1.16603 0.92536 0.86714 0.91718 0.79406 0.81521 0.90020 0.92280 0.84052 0.94375 0.91097 0.93662 0.93553 0.95932 0.96238 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.30 -7.39 9.73 -90.06 -0.88 -8.27 16 3 C 0.34 7.93 7.47 84.78 0.63 8.56 16 4 N -0.55 -11.69 9.21 -308.87 -2.85 -14.53 16 5 C 0.17 2.91 10.94 84.66 0.93 3.84 16 6 C -0.19 -3.10 6.24 22.40 0.14 -2.96 16 7 Br -0.02 -0.32 33.73 -20.37 -0.69 -1.01 16 8 C -0.01 -0.09 9.58 22.46 0.22 0.13 16 9 C -0.16 -3.23 5.42 -19.67 -0.11 -3.34 16 10 C 0.12 2.48 5.49 85.55 0.47 2.95 16 11 N -0.69 -18.27 6.49 -517.92 -3.36 -21.63 16 12 C 0.07 2.20 5.69 86.30 0.49 2.69 16 13 C -0.09 -3.57 5.41 30.59 0.17 -3.40 16 14 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 15 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 16 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 17 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 18 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 19 Si 0.96 44.55 27.47 68.60 1.88 46.43 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 23 H 0.06 1.03 8.11 -2.39 -0.02 1.01 16 24 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 26 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 27 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 28 H 0.08 1.84 7.88 -2.39 -0.02 1.82 16 29 H 0.06 1.04 8.03 -2.39 -0.02 1.02 16 30 H 0.34 8.61 8.72 -89.69 -0.78 7.83 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 36 H 0.02 0.88 7.57 -2.38 -0.02 0.86 16 37 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -69.51 335.88 -0.41 -69.93 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.23 Total: 10.85 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.94 Total: -20.95 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -5.91 Total: -96.98 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.88 Total: -8.27 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -0.69 Total: -1.01 kcal Total: -69.51 -0.41 -69.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865448466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.440 kcal (2) G-P(sol) polarization free energy of solvation -69.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds