Wall clock time and date at job start Tue Mar 31 2020 15:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00067 * 2 1 4 4 C 1.53003 * 109.47004 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.47133 * 67.54180 * 4 3 2 6 6 C 1.46906 * 110.99999 * 294.51825 * 5 4 3 7 7 C 1.50693 * 109.46917 * 300.88037 * 6 5 4 8 8 H 1.07996 * 120.00438 * 4.00742 * 7 6 5 9 9 C 1.37880 * 119.99569 * 184.00347 * 7 6 5 10 10 N 1.31513 * 120.00476 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47252 * 90.00027 * 11 9 7 13 13 H 1.48497 * 109.47012 * 210.00066 * 11 9 7 14 14 H 1.48500 * 109.46942 * 330.00040 * 11 9 7 15 15 C 1.46905 * 111.00210 * 58.47563 * 5 4 3 16 16 C 1.50694 * 109.47386 * 71.15917 * 15 5 4 17 17 C 1.38620 * 120.42725 * 254.51120 * 16 15 5 18 18 C 1.38657 * 118.43348 * 180.02562 * 17 16 15 19 19 C 1.38196 * 119.18544 * 359.97438 * 18 17 16 20 20 N 1.31866 * 120.77960 * 0.02562 * 19 18 17 21 21 C 1.31964 * 121.70632 * 359.97438 * 20 19 18 22 22 Br 1.89107 * 119.62665 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47275 * 300.00054 * 1 2 3 24 24 H 1.09007 * 109.46973 * 60.00049 * 1 2 3 25 25 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47246 * 60.00106 * 3 2 1 27 27 H 1.08995 * 109.47410 * 299.99648 * 3 2 1 28 28 H 1.08997 * 109.47040 * 307.53753 * 4 3 2 29 29 H 1.09004 * 109.47135 * 187.53988 * 4 3 2 30 30 H 1.09001 * 109.46703 * 60.88617 * 6 5 4 31 31 H 1.09002 * 109.46827 * 180.88028 * 6 5 4 32 32 H 0.96996 * 120.00044 * 180.02562 * 10 9 7 33 33 H 1.09007 * 109.46630 * 311.15916 * 15 5 4 34 34 H 1.09003 * 109.47255 * 191.16547 * 15 5 4 35 35 H 1.08005 * 120.77786 * 0.04338 * 17 16 15 36 36 H 1.08003 * 120.40441 * 180.02562 * 18 17 16 37 37 H 1.08001 * 119.61169 * 180.27483 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9823 0.6182 -1.2789 6 6 3.5106 -0.7641 -1.4362 7 6 4.0385 -1.6069 -0.3040 8 1 4.6079 -1.1481 0.4908 9 6 3.7946 -2.9638 -0.2828 10 7 3.1017 -3.5226 -1.2509 11 14 4.4484 -4.0084 1.1210 12 1 3.4400 -4.0616 2.2098 13 1 4.7199 -5.3833 0.6301 14 1 5.7052 -3.4107 1.6391 15 6 3.5469 1.4545 -2.4055 16 6 4.3364 2.7381 -2.4129 17 6 3.7500 3.9253 -2.0026 18 6 4.5143 5.0819 -2.0266 19 6 5.8264 5.0139 -2.4551 20 7 6.3524 3.8671 -2.8386 21 6 5.6553 2.7467 -2.8291 22 35 6.4685 1.1349 -3.3923 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8478 0.5318 0.8158 29 1 3.9781 2.1715 0.1355 30 1 2.4208 -0.7797 -1.4235 31 1 3.8686 -1.1644 -2.3848 32 1 2.9298 -4.4771 -1.2357 33 1 2.4858 1.6811 -2.3009 34 1 3.7137 0.9199 -3.3407 35 1 2.7221 3.9486 -1.6718 36 1 4.0897 6.0243 -1.7134 37 1 6.4293 5.9098 -2.4724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876692163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:16 Heat of formation + Delta-G solvation = 14.465557 kcal Electronic energy + Delta-G solvation = -20775.376159 eV Core-core repulsion = 17600.049510 eV Total energy + Delta-G solvation = -3175.326649 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25132 -38.13351 -35.89865 -33.00605 -32.55027 -31.95322 -29.66026 -28.98297 -27.16094 -25.91663 -24.62083 -23.23131 -22.79102 -21.82039 -19.52339 -16.88407 -16.71563 -16.32621 -15.93244 -15.70541 -15.08466 -14.70485 -14.35561 -14.21946 -13.65560 -13.51639 -13.25103 -13.14657 -12.32222 -11.89860 -11.69069 -11.58106 -11.22599 -11.08643 -11.04971 -10.67554 -10.65335 -10.57645 -10.16406 -9.89416 -9.72819 -9.64653 -9.45225 -8.99135 -8.95645 -8.63241 -8.23447 -7.05354 -5.83521 -3.79184 0.96866 1.21558 1.79088 3.41895 3.47698 3.51737 3.67897 4.40035 4.48623 4.58717 4.72356 4.89662 4.96401 5.14422 5.23529 5.46058 5.53362 5.54792 5.62058 5.68688 5.78647 5.81820 5.92587 6.03039 6.08465 6.16892 6.22324 6.26539 6.52803 6.75241 7.39081 7.71811 7.78016 7.85144 7.92292 8.19674 8.37071 8.70834 9.23161 9.80431 11.28406 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.005699 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.642383 B = 4911.802506 C = 6316.763452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.024 3.976 4 C 0.061 3.939 5 N -0.516 5.516 6 C 0.187 3.813 7 C -0.482 4.482 8 H 0.057 0.943 9 C 0.057 3.943 10 N -0.901 5.901 11 Si 0.888 3.112 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.079 3.921 16 C -0.081 4.081 17 C -0.073 4.073 18 C -0.165 4.165 19 C 0.094 3.906 20 N -0.466 5.466 21 C 0.141 3.859 22 Br 0.014 6.986 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.026 0.974 32 H 0.256 0.744 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 16.565 -2.961 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.055 4.055 4 C -0.068 4.068 5 N -0.239 5.239 6 C 0.063 3.937 7 C -0.521 4.521 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.541 5.541 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.201 1.201 15 C -0.050 4.050 16 C -0.086 4.086 17 C -0.100 4.100 18 C -0.185 4.185 19 C -0.065 4.065 20 N -0.176 5.176 21 C -0.076 4.076 22 Br 0.099 6.901 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.329 15.536 -3.522 15.985 hybrid contribution -1.886 0.136 1.247 2.265 sum -0.557 15.672 -2.274 15.846 Atomic orbital electron populations 1.22677 0.83807 1.02309 0.98193 1.88543 1.17198 1.25327 1.94447 1.23317 0.97561 0.86240 0.98396 1.22220 0.89400 0.99428 0.95715 1.62378 1.58717 1.04354 0.98447 1.20026 0.95829 0.80367 0.97433 1.20992 1.32180 0.91913 1.06981 0.92530 1.24825 0.95744 0.97813 0.95857 1.69947 1.40862 1.10970 1.32363 0.86665 0.79161 0.79748 0.82763 1.21077 1.21610 1.20081 1.21162 0.95214 0.90406 0.98180 1.20897 0.94035 0.96973 0.96710 1.21531 1.00340 0.91584 0.96543 1.22146 0.95766 0.99315 1.01262 1.22694 0.93234 0.95267 0.95343 1.67508 1.37855 0.98072 1.14206 1.22846 0.91625 0.93047 1.00131 1.96864 1.81768 1.23524 1.87960 0.95418 0.95341 0.89940 0.94679 0.94399 0.88537 0.92071 0.95285 0.95589 0.93435 0.93850 0.89377 0.84602 0.84591 0.82467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.34 -6.83 7.26 -35.23 -0.26 -7.09 16 3 C 0.02 0.39 5.77 37.16 0.21 0.61 16 4 C 0.06 1.13 5.51 -3.83 -0.02 1.11 16 5 N -0.52 -10.47 4.43 -237.51 -1.05 -11.52 16 6 C 0.19 4.67 4.16 -4.98 -0.02 4.65 16 7 C -0.48 -13.27 8.27 -34.44 -0.28 -13.55 16 8 H 0.06 1.56 6.48 -52.49 -0.34 1.22 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 11 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.08 1.36 4.21 -4.98 -0.02 1.33 16 16 C -0.08 -1.23 4.64 -104.46 -0.48 -1.72 16 17 C -0.07 -0.87 9.44 -39.29 -0.37 -1.24 16 18 C -0.16 -1.68 10.11 -39.44 -0.40 -2.08 16 19 C 0.09 1.09 11.18 -17.55 -0.20 0.89 16 20 N -0.47 -7.12 10.33 -11.64 -0.12 -7.24 16 21 C 0.14 2.30 7.16 -17.47 -0.13 2.18 16 22 Br 0.01 0.25 32.09 -68.01 -2.18 -1.94 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 25 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.58 5.78 -51.93 -0.30 0.28 16 28 H 0.10 2.03 6.17 -51.93 -0.32 1.71 16 29 H 0.06 1.00 7.20 -51.93 -0.37 0.63 16 30 H 0.03 0.78 5.31 -51.93 -0.28 0.50 16 31 H 0.03 0.72 8.03 -51.93 -0.42 0.30 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.04 0.70 5.45 -51.93 -0.28 0.42 16 34 H 0.09 1.59 7.22 -51.93 -0.38 1.22 16 35 H 0.14 1.35 8.04 -52.48 -0.42 0.93 16 36 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 37 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -31.43 321.85 -8.52 -39.95 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.78 Total: -3.33 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.69 Total: -4.74 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.44 Total: -44.77 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.26 Total: -7.09 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 35 Polarization: 0.25 SS G_CDS: -2.18 Total: -1.94 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.43 -8.52 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876692163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.412 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds