Wall clock time and date at job start Tue Mar 31 2020 15:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00067 * 2 1 4 4 C 1.53003 * 109.47004 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.47133 * 67.54180 * 4 3 2 6 6 C 1.46906 * 110.99999 * 294.51825 * 5 4 3 7 7 C 1.50693 * 109.46917 * 300.88037 * 6 5 4 8 8 H 1.07996 * 120.00438 * 4.00742 * 7 6 5 9 9 C 1.37880 * 119.99569 * 184.00347 * 7 6 5 10 10 N 1.31513 * 120.00476 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99843 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47252 * 90.00027 * 11 9 7 13 13 H 1.48497 * 109.47012 * 210.00066 * 11 9 7 14 14 H 1.48500 * 109.46942 * 330.00040 * 11 9 7 15 15 C 1.46905 * 111.00210 * 58.47563 * 5 4 3 16 16 C 1.50694 * 109.47386 * 71.15917 * 15 5 4 17 17 C 1.38620 * 120.42725 * 254.51120 * 16 15 5 18 18 C 1.38657 * 118.43348 * 180.02562 * 17 16 15 19 19 C 1.38196 * 119.18544 * 359.97438 * 18 17 16 20 20 N 1.31866 * 120.77960 * 0.02562 * 19 18 17 21 21 C 1.31964 * 121.70632 * 359.97438 * 20 19 18 22 22 Br 1.89107 * 119.62665 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47275 * 300.00054 * 1 2 3 24 24 H 1.09007 * 109.46973 * 60.00049 * 1 2 3 25 25 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47246 * 60.00106 * 3 2 1 27 27 H 1.08995 * 109.47410 * 299.99648 * 3 2 1 28 28 H 1.08997 * 109.47040 * 307.53753 * 4 3 2 29 29 H 1.09004 * 109.47135 * 187.53988 * 4 3 2 30 30 H 1.09001 * 109.46703 * 60.88617 * 6 5 4 31 31 H 1.09002 * 109.46827 * 180.88028 * 6 5 4 32 32 H 0.96996 * 120.00044 * 180.02562 * 10 9 7 33 33 H 1.09007 * 109.46630 * 311.15916 * 15 5 4 34 34 H 1.09003 * 109.47255 * 191.16547 * 15 5 4 35 35 H 1.08005 * 120.77786 * 0.04338 * 17 16 15 36 36 H 1.08003 * 120.40441 * 180.02562 * 18 17 16 37 37 H 1.08001 * 119.61169 * 180.27483 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9823 0.6182 -1.2789 6 6 3.5106 -0.7641 -1.4362 7 6 4.0385 -1.6069 -0.3040 8 1 4.6079 -1.1481 0.4908 9 6 3.7946 -2.9638 -0.2828 10 7 3.1017 -3.5226 -1.2509 11 14 4.4484 -4.0084 1.1210 12 1 3.4400 -4.0616 2.2098 13 1 4.7199 -5.3833 0.6301 14 1 5.7052 -3.4107 1.6391 15 6 3.5469 1.4545 -2.4055 16 6 4.3364 2.7381 -2.4129 17 6 3.7500 3.9253 -2.0026 18 6 4.5143 5.0819 -2.0266 19 6 5.8264 5.0139 -2.4551 20 7 6.3524 3.8671 -2.8386 21 6 5.6553 2.7467 -2.8291 22 35 6.4685 1.1349 -3.3923 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8478 0.5318 0.8158 29 1 3.9781 2.1715 0.1355 30 1 2.4208 -0.7797 -1.4235 31 1 3.8686 -1.1644 -2.3848 32 1 2.9298 -4.4771 -1.2357 33 1 2.4858 1.6811 -2.3009 34 1 3.7137 0.9199 -3.3407 35 1 2.7221 3.9486 -1.6718 36 1 4.0897 6.0243 -1.7134 37 1 6.4293 5.9098 -2.4724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876692163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:15 Heat of formation + Delta-G solvation = -7.157717 kcal Electronic energy + Delta-G solvation = -20776.313815 eV Core-core repulsion = 17600.049510 eV Total energy + Delta-G solvation = -3176.264305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30950 -39.55648 -37.34945 -34.76939 -33.65307 -33.42253 -30.83459 -30.50492 -28.81038 -27.21325 -26.19669 -24.41755 -24.15899 -23.20785 -21.03823 -18.35467 -17.92131 -17.72408 -17.37988 -17.03458 -16.65561 -16.04470 -15.91191 -15.55627 -14.99775 -14.88893 -14.47216 -14.13480 -13.98112 -13.44553 -13.20595 -12.92768 -12.84152 -12.75563 -12.50446 -12.48335 -12.30123 -11.84991 -11.72153 -11.64273 -11.09377 -11.04520 -10.71589 -10.54184 -10.50914 -10.19592 -9.73426 -8.66720 -8.01321 -6.02472 -0.03481 0.24679 0.64194 1.42815 1.43618 1.53477 2.49998 2.68737 3.09882 3.33554 3.44844 3.59380 3.79085 3.98540 4.06864 4.22554 4.28631 4.36337 4.43389 4.53235 4.57650 4.62407 4.69002 4.75708 4.86156 4.90640 5.08269 5.17046 5.24770 5.54136 5.63291 5.76705 5.80683 6.26481 6.50712 6.53961 6.78530 6.83070 7.10426 7.60954 9.10403 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.005699 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.642383 B = 4911.802506 C = 6316.763452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.385 6.385 3 C 0.027 3.973 4 C 0.064 3.936 5 N -0.526 5.526 6 C 0.209 3.791 7 C -0.484 4.484 8 H 0.051 0.949 9 C 0.005 3.995 10 N -0.934 5.934 11 Si 0.948 3.052 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.087 3.913 16 C -0.097 4.097 17 C -0.069 4.069 18 C -0.142 4.142 19 C 0.093 3.907 20 N -0.494 5.494 21 C 0.119 3.881 22 Br -0.022 7.022 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.016 0.984 31 H -0.013 1.013 32 H 0.256 0.744 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.164 0.836 36 H 0.184 0.816 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 19.903 -1.598 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.304 6.304 3 C -0.051 4.051 4 C -0.064 4.064 5 N -0.248 5.248 6 C 0.084 3.916 7 C -0.523 4.523 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.577 5.577 11 Si 0.775 3.225 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.196 1.196 15 C -0.041 4.041 16 C -0.102 4.102 17 C -0.096 4.096 18 C -0.162 4.162 19 C -0.066 4.066 20 N -0.205 5.205 21 C -0.097 4.097 22 Br 0.063 6.937 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.034 0.966 31 H 0.005 0.995 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.181 0.819 36 H 0.201 0.799 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.503 18.895 -2.151 19.023 hybrid contribution -1.636 -0.674 0.825 1.953 sum -1.134 18.220 -1.326 18.304 Atomic orbital electron populations 1.22763 0.81911 1.02157 1.00216 1.88445 1.19495 1.27633 1.94844 1.23334 0.95855 0.85388 1.00549 1.22165 0.91244 0.99595 0.93437 1.62156 1.59391 1.02814 1.00484 1.19534 0.94570 0.82982 0.94504 1.21281 1.31314 0.92441 1.07286 0.93113 1.25578 0.96238 0.99186 0.98132 1.70073 1.42344 1.11106 1.34130 0.85709 0.78696 0.78043 0.80050 1.20386 1.21434 1.19632 1.21025 0.96292 0.90839 0.95954 1.20707 0.93554 0.97133 0.98805 1.21884 1.01672 0.90703 0.95301 1.22628 0.94651 1.00414 0.98501 1.23433 0.94538 0.94987 0.93654 1.67450 1.38716 0.98804 1.15522 1.22676 0.92148 0.92684 1.02167 1.96814 1.82387 1.26045 1.88488 0.92829 0.93686 0.91347 0.91881 0.92475 0.91738 0.89484 0.96645 0.99475 0.93559 0.92495 0.91486 0.81854 0.79882 0.78951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.39 -15.39 7.26 -148.98 -1.08 -16.47 16 3 C 0.03 0.83 5.77 71.98 0.42 1.24 16 4 C 0.06 2.30 5.51 86.31 0.48 2.77 16 5 N -0.53 -21.60 4.43 -905.36 -4.01 -25.61 16 6 C 0.21 10.86 4.16 85.55 0.36 11.22 16 7 C -0.48 -27.48 8.27 25.60 0.21 -27.27 16 8 H 0.05 2.88 6.48 -2.91 -0.02 2.86 16 9 C 0.01 0.30 5.46 84.66 0.46 0.76 16 10 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 11 Si 0.95 46.21 29.54 68.60 2.03 48.24 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 14 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 15 C 0.09 2.98 4.21 85.55 0.36 3.34 16 16 C -0.10 -2.79 4.64 -19.76 -0.09 -2.88 16 17 C -0.07 -1.35 9.44 22.46 0.21 -1.14 16 18 C -0.14 -2.13 10.11 22.36 0.23 -1.90 16 19 C 0.09 1.79 11.18 84.68 0.95 2.73 16 20 N -0.49 -14.26 10.33 -190.75 -1.97 -16.23 16 21 C 0.12 3.83 7.16 84.69 0.61 4.44 16 22 Br -0.02 -0.80 32.09 -20.37 -0.65 -1.45 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.55 5.78 -2.39 -0.01 1.54 16 28 H 0.06 2.72 6.17 -2.39 -0.01 2.71 16 29 H 0.09 2.64 7.20 -2.39 -0.02 2.62 16 30 H 0.02 0.88 5.31 -2.39 -0.01 0.87 16 31 H -0.01 -0.75 8.03 -2.39 -0.02 -0.77 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.06 1.75 5.45 -2.38 -0.01 1.74 16 34 H 0.07 2.54 7.22 -2.39 -0.02 2.52 16 35 H 0.16 2.32 8.04 -2.91 -0.02 2.29 16 36 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -71.95 321.85 1.10 -70.86 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.08 Total: 2.26 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.43 Total: -4.65 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -5.70 Total: -98.79 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -1.08 Total: -16.47 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -0.65 Total: -1.45 kcal Total: -71.95 1.10 -70.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876692163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.697 kcal (2) G-P(sol) polarization free energy of solvation -71.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds