Wall clock time and date at job start Tue Mar 31 2020 15:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00022 * 2 1 4 4 H 1.48505 * 109.47103 * 239.99953 * 3 2 1 5 5 H 1.48502 * 109.47269 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47438 * 119.99747 * 3 2 1 7 7 C 1.37879 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46834 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99649 * 169.99925 * 10 9 7 12 12 C 1.53054 * 109.36527 * 183.18788 * 11 10 9 13 13 N 1.46958 * 109.36271 * 301.60013 * 12 11 10 14 14 C 1.46897 * 110.99682 * 183.18886 * 13 12 11 15 15 C 1.50705 * 109.47104 * 170.00109 * 14 13 12 16 16 O 1.34348 * 125.79545 * 270.02443 * 15 14 13 17 17 C 1.34294 * 109.48433 * 179.97438 * 16 15 14 18 18 C 1.34515 * 108.43639 * 0.02562 * 17 16 15 19 19 C 1.34563 * 125.79858 * 90.01857 * 15 14 13 20 20 Br 1.89102 * 126.58761 * 0.04074 * 19 15 14 21 21 C 1.46956 * 110.88199 * 59.31972 * 13 12 11 22 22 C 1.46959 * 111.00033 * 293.79428 * 10 9 7 23 23 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47148 * 59.99752 * 9 7 2 25 25 H 1.09004 * 109.46887 * 299.99601 * 9 7 2 26 26 H 1.09001 * 109.48956 * 63.21966 * 11 10 9 27 27 H 1.09006 * 109.48822 * 303.15419 * 11 10 9 28 28 H 1.08997 * 109.48992 * 181.63181 * 12 11 10 29 29 H 1.09001 * 109.48566 * 61.56567 * 12 11 10 30 30 H 1.08997 * 109.47625 * 50.00153 * 14 13 12 31 31 H 1.09004 * 109.46921 * 289.99628 * 14 13 12 32 32 H 1.08001 * 125.77940 * 179.97438 * 17 16 15 33 33 H 1.07997 * 126.57676 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.49304 * 60.64363 * 21 13 12 35 35 H 1.08996 * 109.48753 * 180.71270 * 21 13 12 36 36 H 1.08990 * 109.48938 * 296.78300 * 22 10 9 37 37 H 1.09000 * 109.48688 * 56.82492 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5209 -4.8940 0.2388 12 6 2.5564 -6.0188 0.3104 13 7 3.3194 -6.0593 -0.9449 14 6 4.2740 -7.1758 -0.9448 15 6 4.8580 -7.3374 -2.3247 16 8 4.3579 -8.1090 -3.3042 17 6 5.1357 -8.0089 -4.3945 18 6 6.1477 -7.1666 -4.1192 19 6 5.9689 -6.7334 -2.7849 20 35 7.0785 -5.5359 -1.8304 21 6 4.0042 -4.7810 -1.1831 22 6 2.9686 -3.6563 -1.2548 23 1 -0.4851 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8904 26 1 0.8253 -5.0915 -0.5768 27 1 0.9733 -4.8433 1.1800 28 1 2.0485 -6.9718 0.4582 29 1 3.2355 -5.8353 1.1431 30 1 3.7600 -8.0933 -0.6582 31 1 5.0739 -6.9700 -0.2335 32 1 4.9761 -8.5190 -5.3330 33 1 6.9435 -6.8762 -4.7890 34 1 4.6997 -4.5834 -0.3675 35 1 4.5517 -4.8317 -2.1242 36 1 2.2895 -3.8397 -2.0873 37 1 3.4762 -2.7031 -1.4028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877748158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:41 Heat of formation + Delta-G solvation = 36.832274 kcal Electronic energy + Delta-G solvation = -20303.244590 eV Core-core repulsion = 17128.887834 eV Total energy + Delta-G solvation = -3174.356756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.86164 -38.77247 -35.39999 -33.71580 -32.56583 -31.15190 -30.36676 -30.17612 -27.87027 -25.81609 -23.75861 -23.10266 -21.86106 -21.36497 -20.44993 -19.17752 -17.46298 -16.66527 -16.28559 -15.55232 -15.12118 -14.66214 -14.53290 -14.26013 -13.95584 -13.70672 -13.25487 -13.09495 -13.02088 -12.58900 -12.16205 -11.96071 -11.78723 -11.43839 -11.14908 -10.89640 -10.72774 -10.62571 -10.39668 -10.32950 -10.19479 -9.72606 -9.61337 -9.17199 -8.70642 -8.41257 -8.19797 -7.20658 -6.00191 -4.01475 1.37059 1.50851 2.16123 2.78682 3.35317 3.39084 3.42189 4.04978 4.42160 4.44527 4.63458 4.91177 4.97603 5.17150 5.25680 5.35361 5.41203 5.43424 5.56436 5.73325 5.74958 5.82841 5.95498 6.02889 6.09299 6.19709 6.43228 6.60517 6.72865 6.78105 7.09233 7.14161 7.35814 7.39534 7.82328 8.11343 8.23015 8.57822 9.05774 9.62606 11.10701 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.003870 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.222822 B = 7233.035376 C = 8128.335655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.534 5.534 14 C 0.123 3.877 15 C 0.055 3.945 16 O -0.157 6.157 17 C -0.033 4.033 18 C -0.189 4.189 19 C -0.187 4.187 20 Br -0.010 7.010 21 C 0.053 3.947 22 C 0.069 3.931 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.209 0.791 33 H 0.156 0.844 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.389 -18.290 -6.074 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.072 4.072 12 C -0.065 4.065 13 N -0.260 5.260 14 C -0.005 4.005 15 C 0.000 4.000 16 O -0.052 6.052 17 C -0.101 4.101 18 C -0.209 4.209 19 C -0.269 4.269 20 Br 0.074 6.926 21 C -0.075 4.075 22 C -0.060 4.060 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.226 0.774 33 H 0.173 0.827 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.357 -17.892 -5.682 23.039 hybrid contribution 0.340 0.794 -0.505 1.000 sum 13.697 -17.098 -6.187 22.765 Atomic orbital electron populations 1.69948 1.06058 1.26842 1.51007 1.24975 0.94841 0.99251 0.95462 0.86578 0.79459 0.82830 0.78649 1.20271 1.21364 1.20185 1.21117 0.93417 0.89966 1.50082 0.91979 1.19697 0.90035 0.87283 0.96104 1.62296 1.28093 1.02705 1.33221 1.22060 0.94635 0.89918 1.00625 1.22193 0.96077 0.98975 0.89277 1.62185 1.24991 1.03062 1.35761 1.20573 0.95949 0.97016 0.86949 1.22246 0.92819 0.93404 0.91509 1.84131 1.46733 1.54367 1.19923 1.24025 0.92083 1.03002 0.91031 1.21640 1.02265 1.01779 0.95219 1.22021 1.00818 1.06397 0.97640 1.96693 1.64252 1.58492 1.73120 1.22519 0.96209 0.88026 1.00755 1.21978 0.95346 0.97439 0.91201 0.92895 0.99085 0.95196 0.95071 0.90773 0.90888 0.93831 0.88640 0.90999 0.77442 0.82667 0.93577 0.90932 0.95472 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.36 8.47 -34.44 -0.29 -14.65 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 9 C 0.19 5.12 4.72 -4.97 -0.02 5.10 16 10 N -0.54 -11.82 4.70 -235.90 -1.11 -12.93 16 11 C 0.06 1.04 5.61 -3.77 -0.02 1.01 16 12 C 0.06 0.92 5.61 -3.76 -0.02 0.90 16 13 N -0.53 -8.05 4.70 -235.91 -1.11 -9.15 16 14 C 0.12 1.50 5.30 -4.98 -0.03 1.47 16 15 C 0.05 0.69 6.24 -35.61 -0.22 0.47 16 16 O -0.16 -1.90 10.65 5.61 0.06 -1.84 16 17 C -0.03 -0.31 12.09 29.42 0.36 0.04 16 18 C -0.19 -1.95 10.91 -39.68 -0.43 -2.39 16 19 C -0.19 -2.30 5.55 -39.67 -0.22 -2.52 16 20 Br -0.01 -0.12 31.16 -68.01 -2.12 -2.24 16 21 C 0.05 0.88 4.36 -3.77 -0.02 0.86 16 22 C 0.07 1.41 5.43 -3.76 -0.02 1.39 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 25 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 28 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.99 8.03 -51.93 -0.42 0.57 16 31 H 0.07 0.84 7.73 -51.93 -0.40 0.44 16 32 H 0.21 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.05 0.78 7.93 -51.93 -0.41 0.37 16 35 H 0.07 1.18 5.29 -51.93 -0.27 0.90 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -31.15 319.12 -9.95 -41.09 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -5.16 Total: -3.54 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.04 Total: -6.81 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -1.48 Total: -48.27 kcal Atomic # 8 Polarization: -1.90 SS G_CDS: 0.06 Total: -1.84 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -2.12 Total: -2.24 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.15 -9.95 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877748158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.927 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds