Wall clock time and date at job start Tue Mar 31 2020 15:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00022 * 2 1 4 4 H 1.48505 * 109.47103 * 239.99953 * 3 2 1 5 5 H 1.48502 * 109.47269 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47438 * 119.99747 * 3 2 1 7 7 C 1.37879 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46834 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99649 * 169.99925 * 10 9 7 12 12 C 1.53054 * 109.36527 * 183.18788 * 11 10 9 13 13 N 1.46958 * 109.36271 * 301.60013 * 12 11 10 14 14 C 1.46897 * 110.99682 * 183.18886 * 13 12 11 15 15 C 1.50705 * 109.47104 * 170.00109 * 14 13 12 16 16 O 1.34348 * 125.79545 * 270.02443 * 15 14 13 17 17 C 1.34294 * 109.48433 * 179.97438 * 16 15 14 18 18 C 1.34515 * 108.43639 * 0.02562 * 17 16 15 19 19 C 1.34563 * 125.79858 * 90.01857 * 15 14 13 20 20 Br 1.89102 * 126.58761 * 0.04074 * 19 15 14 21 21 C 1.46956 * 110.88199 * 59.31972 * 13 12 11 22 22 C 1.46959 * 111.00033 * 293.79428 * 10 9 7 23 23 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47148 * 59.99752 * 9 7 2 25 25 H 1.09004 * 109.46887 * 299.99601 * 9 7 2 26 26 H 1.09001 * 109.48956 * 63.21966 * 11 10 9 27 27 H 1.09006 * 109.48822 * 303.15419 * 11 10 9 28 28 H 1.08997 * 109.48992 * 181.63181 * 12 11 10 29 29 H 1.09001 * 109.48566 * 61.56567 * 12 11 10 30 30 H 1.08997 * 109.47625 * 50.00153 * 14 13 12 31 31 H 1.09004 * 109.46921 * 289.99628 * 14 13 12 32 32 H 1.08001 * 125.77940 * 179.97438 * 17 16 15 33 33 H 1.07997 * 126.57676 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.49304 * 60.64363 * 21 13 12 35 35 H 1.08996 * 109.48753 * 180.71270 * 21 13 12 36 36 H 1.08990 * 109.48938 * 296.78300 * 22 10 9 37 37 H 1.09000 * 109.48688 * 56.82492 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5209 -4.8940 0.2388 12 6 2.5564 -6.0188 0.3104 13 7 3.3194 -6.0593 -0.9449 14 6 4.2740 -7.1758 -0.9448 15 6 4.8580 -7.3374 -2.3247 16 8 4.3579 -8.1090 -3.3042 17 6 5.1357 -8.0089 -4.3945 18 6 6.1477 -7.1666 -4.1192 19 6 5.9689 -6.7334 -2.7849 20 35 7.0785 -5.5359 -1.8304 21 6 4.0042 -4.7810 -1.1831 22 6 2.9686 -3.6563 -1.2548 23 1 -0.4851 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8904 26 1 0.8253 -5.0915 -0.5768 27 1 0.9733 -4.8433 1.1800 28 1 2.0485 -6.9718 0.4582 29 1 3.2355 -5.8353 1.1431 30 1 3.7600 -8.0933 -0.6582 31 1 5.0739 -6.9700 -0.2335 32 1 4.9761 -8.5190 -5.3330 33 1 6.9435 -6.8762 -4.7890 34 1 4.6997 -4.5834 -0.3675 35 1 4.5517 -4.8317 -2.1242 36 1 2.2895 -3.8397 -2.0873 37 1 3.4762 -2.7031 -1.4028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877748158.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:41 Heat of formation + Delta-G solvation = 15.213217 kcal Electronic energy + Delta-G solvation = -20304.182063 eV Core-core repulsion = 17128.887834 eV Total energy + Delta-G solvation = -3175.294228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.68985 -40.18510 -36.93254 -34.80785 -34.42308 -32.23221 -31.73947 -31.27194 -29.47310 -27.33431 -25.23530 -24.50228 -23.23800 -22.67559 -21.32869 -20.66364 -18.49893 -18.28456 -17.70152 -16.90798 -16.32792 -16.18287 -15.85859 -15.76413 -15.33201 -15.10452 -14.83381 -14.24951 -13.94202 -13.81168 -13.67273 -13.32522 -13.21308 -12.88427 -12.74560 -12.54765 -12.37201 -12.27517 -12.08768 -11.91775 -11.51329 -11.20853 -11.19602 -10.61465 -10.48234 -9.61807 -9.34538 -9.04086 -8.20695 -6.30980 0.50466 0.61152 1.37582 1.40521 1.43768 1.51681 2.00582 2.40042 2.91593 3.11412 3.28807 3.59603 3.83171 3.93963 4.05296 4.19244 4.27534 4.37479 4.44981 4.51861 4.57580 4.65819 4.70637 4.85339 4.92357 4.96233 5.01837 5.02721 5.20744 5.27190 5.31172 5.63166 5.86934 5.93707 6.00404 6.05663 6.31460 6.61900 6.84223 7.38642 8.90421 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.003870 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.222822 B = 7233.035376 C = 8128.335655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.542 5.542 11 C 0.053 3.947 12 C 0.071 3.929 13 N -0.545 5.545 14 C 0.126 3.874 15 C 0.032 3.968 16 O -0.169 6.169 17 C -0.019 4.019 18 C -0.207 4.207 19 C -0.196 4.196 20 Br -0.016 7.016 21 C 0.072 3.928 22 C 0.072 3.928 23 H 0.265 0.735 24 H -0.042 1.042 25 H 0.007 0.993 26 H 0.020 0.980 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.250 0.750 33 H 0.172 0.828 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.010 0.990 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.839 -19.478 -6.525 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.267 5.267 11 C -0.076 4.076 12 C -0.056 4.056 13 N -0.271 5.271 14 C -0.001 4.001 15 C -0.022 4.022 16 O -0.064 6.064 17 C -0.086 4.086 18 C -0.227 4.227 19 C -0.278 4.278 20 Br 0.068 6.932 21 C -0.056 4.056 22 C -0.056 4.056 23 H 0.074 0.926 24 H -0.024 1.024 25 H 0.025 0.975 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.067 0.933 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.266 0.734 33 H 0.190 0.810 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.028 0.972 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.825 -19.110 -6.130 24.951 hybrid contribution -0.131 1.080 -0.432 1.170 sum 14.694 -18.030 -6.562 24.167 Atomic orbital electron populations 1.70078 1.07736 1.27983 1.51671 1.25898 0.95724 1.03139 0.94721 0.85457 0.78206 0.77969 0.79129 1.19329 1.20698 1.19226 1.21411 0.93534 0.91077 1.50247 0.92024 1.19353 0.90063 0.88969 0.93366 1.62234 1.27268 1.03237 1.33950 1.22197 0.95714 0.89383 1.00295 1.22147 0.95301 0.98819 0.89318 1.62118 1.25943 1.02962 1.36033 1.20614 0.95718 0.96457 0.87309 1.22270 0.93388 0.94540 0.92007 1.84129 1.47359 1.54401 1.20524 1.24870 0.90693 1.01808 0.91278 1.21949 1.03459 1.02437 0.94812 1.22257 1.00809 1.06189 0.98565 1.96682 1.64406 1.58735 1.73377 1.22230 0.94612 0.87728 1.01037 1.21925 0.95551 0.98277 0.89895 0.92646 1.02428 0.97470 0.96165 0.90400 0.87342 0.93345 0.86320 0.90347 0.73428 0.81012 0.93688 0.90400 0.97193 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.52 -30.46 8.47 25.60 0.22 -30.24 16 8 H 0.06 3.51 7.13 -2.91 -0.02 3.49 16 9 C 0.21 11.53 4.72 85.56 0.40 11.94 16 10 N -0.54 -24.41 4.70 -900.26 -4.23 -28.64 16 11 C 0.05 1.93 5.61 86.31 0.48 2.41 16 12 C 0.07 1.96 5.61 86.31 0.48 2.45 16 13 N -0.54 -15.52 4.70 -900.28 -4.23 -19.76 16 14 C 0.13 2.78 5.30 85.56 0.45 3.23 16 15 C 0.03 0.75 6.24 24.85 0.15 0.90 16 16 O -0.17 -3.68 10.65 -2.84 -0.03 -3.71 16 17 C -0.02 -0.30 12.09 66.97 0.81 0.51 16 18 C -0.21 -3.81 10.91 22.20 0.24 -3.57 16 19 C -0.20 -4.51 5.55 22.21 0.12 -4.38 16 20 Br -0.02 -0.38 31.16 -20.37 -0.63 -1.01 16 21 C 0.07 2.36 4.36 86.31 0.38 2.74 16 22 C 0.07 3.03 5.43 86.31 0.47 3.49 16 23 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 24 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 25 H 0.01 0.42 8.03 -2.38 -0.02 0.40 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 2.75 8.07 -2.38 -0.02 2.74 16 28 H 0.11 2.27 8.07 -2.39 -0.02 2.25 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.12 2.06 8.03 -2.39 -0.02 2.04 16 31 H 0.08 1.64 7.73 -2.38 -0.02 1.62 16 32 H 0.25 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.04 1.49 7.93 -2.39 -0.02 1.47 16 35 H 0.08 2.48 5.29 -2.39 -0.01 2.47 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.07 2.99 6.79 -2.39 -0.02 2.97 16 Total: -1.00 -68.68 319.12 -1.08 -69.76 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.06 Total: 3.15 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 4.68 Total: -9.87 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -8.18 Total: -105.29 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.03 Total: -3.71 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.63 Total: -1.01 kcal Total: -68.68 -1.08 -69.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877748158.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.968 kcal (2) G-P(sol) polarization free energy of solvation -68.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds