Wall clock time and date at job start Tue Mar 31 2020 14:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 120.00281 * 2 1 4 4 H 1.48498 * 109.47589 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47104 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.46854 * 60.00221 * 3 2 1 7 7 C 1.40030 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.41342 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.40613 * 119.78891 * 180.02562 * 9 7 2 11 11 C 1.38306 * 119.13194 * 180.02562 * 10 9 7 12 12 C 1.38697 * 118.66669 * 359.97438 * 11 10 9 13 13 C 1.39635 * 119.49837 * 0.02562 * 12 11 10 14 14 N 1.39267 * 119.57795 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00092 * 185.31983 * 14 13 12 16 16 O 1.21270 * 119.99889 * 354.84737 * 15 14 13 17 17 C 1.50699 * 119.99867 * 174.57512 * 15 14 13 18 18 C 1.52991 * 109.47291 * 180.26903 * 17 15 14 19 19 C 1.52995 * 109.47547 * 180.02562 * 18 17 15 20 20 H 1.09005 * 115.54857 * 330.67495 * 19 18 17 21 21 C 1.52996 * 117.49972 * 116.38059 * 19 18 17 22 22 C 1.53006 * 60.00270 * 107.49501 * 21 19 18 23 23 Cl 1.80297 * 117.49659 * 252.51296 * 22 21 19 24 24 Cl 1.80293 * 117.49985 * 107.49078 * 22 21 19 25 25 N 1.31936 * 120.84984 * 0.25432 * 13 12 11 26 26 H 0.96993 * 119.99958 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.43391 * 0.04258 * 10 9 7 28 28 H 1.07997 * 120.66688 * 180.02562 * 11 10 9 29 29 H 1.07998 * 120.25156 * 180.02562 * 12 11 10 30 30 H 0.97006 * 119.99635 * 5.31540 * 14 13 12 31 31 H 1.08998 * 109.47556 * 300.27851 * 17 15 14 32 32 H 1.09006 * 109.47156 * 60.26947 * 17 15 14 33 33 H 1.08998 * 109.47594 * 300.00925 * 18 17 15 34 34 H 1.09006 * 109.46985 * 59.99939 * 18 17 15 35 35 H 1.09005 * 117.49761 * 214.97894 * 21 19 18 36 36 H 1.08993 * 117.49918 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2124 6 1 1.8827 2.3963 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3009 -2.4367 -0.0005 10 6 2.0084 -3.6519 -0.0005 11 6 1.3032 -4.8416 -0.0011 12 6 -0.0829 -4.7934 -0.0011 13 6 -0.7279 -3.5550 -0.0010 14 7 -2.1196 -3.5047 -0.0016 15 6 -2.7511 -2.3189 -0.1098 16 8 -2.1108 -1.2890 -0.1126 17 6 -4.2523 -2.2732 -0.2335 18 6 -4.7106 -0.8180 -0.3474 19 6 -6.2347 -0.7715 -0.4724 20 1 -6.6942 -1.6385 -0.9472 21 6 -7.0149 -0.0840 0.6499 22 6 -6.8824 0.5932 -0.7157 23 17 -5.7911 2.0235 -0.8333 24 17 -8.3475 0.6441 -1.7653 25 7 -0.0357 -2.4317 -0.0061 26 1 -0.4850 0.8400 0.0004 27 1 3.0884 -3.6561 0.0001 28 1 1.8214 -5.7891 -0.0007 29 1 -0.6591 -5.7069 -0.0011 30 1 -2.6345 -4.3231 0.0759 31 1 -4.5605 -2.8220 -1.1233 32 1 -4.7036 -2.7282 0.6483 33 1 -4.4024 -0.2692 0.5424 34 1 -4.2593 -0.3630 -1.2292 35 1 -7.9879 -0.4987 0.9137 36 1 -6.4423 0.3355 1.4770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:31 Heat of formation + Delta-G solvation = 26.724515 kcal Electronic energy + Delta-G solvation = -22656.124336 eV Core-core repulsion = 19000.633031 eV Total energy + Delta-G solvation = -3655.491305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.38669 -38.41419 -37.41999 -36.18684 -35.77402 -34.11328 -32.98531 -31.96778 -30.28873 -29.02753 -25.79407 -24.89304 -22.54654 -21.86457 -21.15577 -20.63610 -19.23254 -17.72202 -16.64951 -16.23211 -16.04400 -15.26223 -14.98255 -14.66487 -14.44392 -13.66456 -13.56645 -13.46801 -12.99738 -12.91122 -12.62551 -12.26058 -12.19395 -11.83252 -11.78356 -11.41047 -11.30625 -11.21967 -11.07909 -10.96943 -10.93539 -10.63224 -10.47356 -10.29767 -9.91621 -9.90782 -9.66703 -9.01713 -8.93793 -7.96176 -7.20271 -6.95627 -6.13584 -4.39452 1.01388 2.02093 2.77917 2.97463 3.07226 3.18387 3.21513 3.26644 3.73997 3.78170 3.99913 4.06929 4.14686 4.80830 4.88103 4.92879 5.21880 5.28432 5.34280 5.44223 5.66183 5.74665 6.04002 6.12025 6.12955 6.35368 6.49383 6.69733 6.84317 6.85600 7.24584 7.55837 7.63447 7.81680 8.07977 8.20864 8.48268 8.75002 9.05770 9.28697 10.25231 10.48516 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.003436 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.439944 B = 8146.243133 C = 9985.044548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.654 5.654 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.305 4.305 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.372 3.628 14 N -0.669 5.669 15 C 0.466 3.534 16 O -0.407 6.407 17 C -0.135 4.135 18 C -0.078 4.078 19 C -0.109 4.109 20 H 0.128 0.872 21 C -0.144 4.144 22 C -0.004 4.004 23 Cl -0.085 7.085 24 Cl -0.105 7.105 25 N -0.474 5.474 26 H 0.271 0.729 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.438 -0.931 0.189 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.273 5.273 2 C -0.171 4.171 3 Si 0.718 3.282 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.133 3.867 14 N -0.316 5.316 15 C 0.248 3.752 16 O -0.271 6.271 17 C -0.176 4.176 18 C -0.116 4.116 19 C -0.128 4.128 20 H 0.146 0.854 21 C -0.182 4.182 22 C -0.055 4.055 23 Cl -0.058 7.058 24 Cl -0.078 7.078 25 N -0.193 5.193 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.657 1.014 0.058 16.688 hybrid contribution 0.368 -0.544 -0.121 0.668 sum -16.288 0.470 -0.062 16.295 Atomic orbital electron populations 1.70322 1.05717 1.27267 1.23988 1.26163 0.95129 1.00524 0.95244 0.86491 0.80959 0.82332 0.78403 1.18598 1.20048 1.20060 1.19616 0.94078 0.89366 1.42484 0.89959 1.18405 0.87231 0.91956 0.87891 1.21626 0.98546 0.93557 1.19132 1.20565 0.93235 0.96509 0.95830 1.20499 0.94795 0.94990 1.28126 1.18640 0.83451 0.90878 0.93740 1.43462 1.05063 1.09317 1.73742 1.20723 0.89306 0.84969 0.80187 1.91159 1.65468 1.30759 1.39681 1.21629 0.94455 0.98020 1.03465 1.21032 0.89027 0.96453 1.05079 1.23395 0.97402 0.92535 0.99482 0.85397 1.24089 1.03460 0.99610 0.91014 1.26847 0.89018 0.90347 0.99285 1.98774 1.64452 1.44219 1.98308 1.98739 1.40249 1.98441 1.70366 1.68715 1.06975 1.23239 1.20336 0.91675 0.88611 0.88680 0.89159 0.76872 0.89607 0.89646 0.89883 0.89409 0.86401 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.96 8.99 55.55 0.50 -17.46 16 2 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 3 Si 0.89 19.31 29.56 -169.99 -5.02 14.29 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.42 -11.69 9.14 -37.73 -0.34 -12.04 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.59 6.55 -84.99 -0.56 7.04 16 10 C -0.31 -7.71 9.83 -38.66 -0.38 -8.09 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -7.98 9.95 -38.89 -0.39 -8.37 16 13 C 0.37 8.93 7.43 -154.97 -1.15 7.78 16 14 N -0.67 -12.58 5.38 -11.40 -0.06 -12.64 16 15 C 0.47 8.71 7.79 -10.99 -0.09 8.63 16 16 O -0.41 -9.71 11.75 5.57 0.07 -9.64 16 17 C -0.13 -1.62 5.66 -27.89 -0.16 -1.78 16 18 C -0.08 -0.96 3.87 -26.74 -0.10 -1.06 16 19 C -0.11 -0.99 5.58 -90.62 -0.51 -1.50 16 20 H 0.13 0.96 8.08 -51.93 -0.42 0.54 16 21 C -0.14 -1.14 9.86 -26.73 -0.26 -1.40 16 22 C 0.00 -0.04 3.62 -26.72 -0.10 -0.13 16 23 Cl -0.08 -1.05 28.23 -51.86 -1.46 -2.51 16 24 Cl -0.10 -1.05 29.29 -51.86 -1.52 -2.57 16 25 N -0.47 -13.19 5.74 -10.25 -0.06 -13.25 16 26 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 27 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.40 5.63 8.70 -40.82 -0.36 5.27 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.13 7.83 -51.93 -0.41 0.73 16 34 H 0.09 1.28 7.98 -51.93 -0.41 0.87 16 35 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.12 0.96 8.03 -51.93 -0.42 0.54 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -32.50 340.54 -11.05 -43.56 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.10 Total: 5.82 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -4.53 Total: -10.73 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.38 Total: -43.35 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -2.98 Total: -5.08 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.50 -11.05 -43.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.280 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds