Wall clock time and date at job start Tue Mar 31 2020 14:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 120.00281 * 2 1 4 4 H 1.48498 * 109.47589 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47104 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.46854 * 60.00221 * 3 2 1 7 7 C 1.40030 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.41342 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.40613 * 119.78891 * 180.02562 * 9 7 2 11 11 C 1.38306 * 119.13194 * 180.02562 * 10 9 7 12 12 C 1.38697 * 118.66669 * 359.97438 * 11 10 9 13 13 C 1.39635 * 119.49837 * 0.02562 * 12 11 10 14 14 N 1.39267 * 119.57795 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00092 * 185.31983 * 14 13 12 16 16 O 1.21270 * 119.99889 * 354.84737 * 15 14 13 17 17 C 1.50699 * 119.99867 * 174.57512 * 15 14 13 18 18 C 1.52991 * 109.47291 * 180.26903 * 17 15 14 19 19 C 1.52995 * 109.47547 * 180.02562 * 18 17 15 20 20 H 1.09005 * 115.54857 * 330.67495 * 19 18 17 21 21 C 1.52996 * 117.49972 * 116.38059 * 19 18 17 22 22 C 1.53006 * 60.00270 * 107.49501 * 21 19 18 23 23 Cl 1.80297 * 117.49659 * 252.51296 * 22 21 19 24 24 Cl 1.80293 * 117.49985 * 107.49078 * 22 21 19 25 25 N 1.31936 * 120.84984 * 0.25432 * 13 12 11 26 26 H 0.96993 * 119.99958 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.43391 * 0.04258 * 10 9 7 28 28 H 1.07997 * 120.66688 * 180.02562 * 11 10 9 29 29 H 1.07998 * 120.25156 * 180.02562 * 12 11 10 30 30 H 0.97006 * 119.99635 * 5.31540 * 14 13 12 31 31 H 1.08998 * 109.47556 * 300.27851 * 17 15 14 32 32 H 1.09006 * 109.47156 * 60.26947 * 17 15 14 33 33 H 1.08998 * 109.47594 * 300.00925 * 18 17 15 34 34 H 1.09006 * 109.46985 * 59.99939 * 18 17 15 35 35 H 1.09005 * 117.49761 * 214.97894 * 21 19 18 36 36 H 1.08993 * 117.49918 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2124 6 1 1.8827 2.3963 1.2126 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3009 -2.4367 -0.0005 10 6 2.0084 -3.6519 -0.0005 11 6 1.3032 -4.8416 -0.0011 12 6 -0.0829 -4.7934 -0.0011 13 6 -0.7279 -3.5550 -0.0010 14 7 -2.1196 -3.5047 -0.0016 15 6 -2.7511 -2.3189 -0.1098 16 8 -2.1108 -1.2890 -0.1126 17 6 -4.2523 -2.2732 -0.2335 18 6 -4.7106 -0.8180 -0.3474 19 6 -6.2347 -0.7715 -0.4724 20 1 -6.6942 -1.6385 -0.9472 21 6 -7.0149 -0.0840 0.6499 22 6 -6.8824 0.5932 -0.7157 23 17 -5.7911 2.0235 -0.8333 24 17 -8.3475 0.6441 -1.7653 25 7 -0.0357 -2.4317 -0.0061 26 1 -0.4850 0.8400 0.0004 27 1 3.0884 -3.6561 0.0001 28 1 1.8214 -5.7891 -0.0007 29 1 -0.6591 -5.7069 -0.0011 30 1 -2.6345 -4.3231 0.0759 31 1 -4.5605 -2.8220 -1.1233 32 1 -4.7036 -2.7282 0.6483 33 1 -4.4024 -0.2692 0.5424 34 1 -4.2593 -0.3630 -1.2292 35 1 -7.9879 -0.4987 0.9137 36 1 -6.4423 0.3355 1.4770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:31 Heat of formation + Delta-G solvation = 8.550070 kcal Electronic energy + Delta-G solvation = -22656.912439 eV Core-core repulsion = 19000.633031 eV Total energy + Delta-G solvation = -3656.279408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.93459 -39.53161 -38.87868 -36.99380 -36.63831 -35.87224 -34.78979 -33.05983 -32.17105 -30.81940 -27.57736 -26.17298 -23.64200 -23.22278 -22.87023 -21.52476 -20.76244 -19.52750 -17.96194 -17.58048 -17.30233 -16.45658 -16.43070 -16.24578 -15.96033 -15.47217 -14.88026 -14.82992 -14.49789 -14.00001 -13.87338 -13.75629 -13.42332 -12.95360 -12.93511 -12.79967 -12.71542 -12.54138 -12.34444 -12.30571 -12.13334 -12.06526 -11.86160 -11.74327 -11.46781 -11.14037 -10.83612 -10.73097 -10.50132 -9.87364 -9.04401 -8.76972 -8.04138 -6.40622 0.23763 0.94598 1.22261 1.27076 1.38774 1.50508 1.52702 2.22845 2.25486 2.25712 2.46769 3.01213 3.17555 3.41674 3.81110 4.07127 4.08442 4.27892 4.34715 4.45926 4.52905 4.69450 4.74019 4.81896 4.91729 4.97358 4.99574 5.11176 5.14066 5.31213 5.38655 5.70675 5.90585 5.95022 6.17953 6.40955 6.79383 6.90438 7.11337 7.81611 8.38312 8.57568 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.003436 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.439944 B = 8146.243133 C = 9985.044548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.686 5.686 2 C 0.014 3.986 3 Si 0.969 3.031 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.467 4.467 8 H 0.083 0.917 9 C 0.237 3.763 10 C -0.333 4.333 11 C -0.036 4.036 12 C -0.347 4.347 13 C 0.349 3.651 14 N -0.658 5.658 15 C 0.454 3.546 16 O -0.465 6.465 17 C -0.116 4.116 18 C -0.072 4.072 19 C -0.101 4.101 20 H 0.156 0.844 21 C -0.123 4.123 22 C -0.019 4.019 23 Cl -0.116 7.116 24 Cl -0.103 7.103 25 N -0.508 5.508 26 H 0.269 0.731 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.421 0.579 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.147 0.853 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.436 -2.912 0.501 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.305 5.305 2 C -0.212 4.212 3 Si 0.790 3.210 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.498 4.498 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.356 4.356 11 C -0.061 4.061 12 C -0.372 4.372 13 C 0.110 3.890 14 N -0.307 5.307 15 C 0.239 3.761 16 O -0.331 6.331 17 C -0.156 4.156 18 C -0.110 4.110 19 C -0.119 4.119 20 H 0.173 0.827 21 C -0.160 4.160 22 C -0.070 4.070 23 Cl -0.089 7.089 24 Cl -0.076 7.076 25 N -0.228 5.228 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.259 0.741 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.165 0.835 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.698 -1.029 0.374 18.730 hybrid contribution 0.901 -0.143 -0.223 0.939 sum -17.797 -1.172 0.151 17.836 Atomic orbital electron populations 1.70513 1.07080 1.27756 1.25197 1.26960 0.96008 1.03712 0.94491 0.85356 0.79728 0.77504 0.78369 1.17768 1.19767 1.19521 1.19899 0.94343 0.90521 1.45009 0.89890 1.18881 0.88149 0.93289 0.88591 1.21796 0.99113 0.93962 1.20692 1.21044 0.93771 0.97223 0.94024 1.21005 0.95100 0.95944 1.25164 1.19210 0.85676 0.90874 0.93201 1.43506 1.03276 1.10910 1.73036 1.21961 0.91963 0.83941 0.78265 1.91160 1.67396 1.32645 1.41934 1.21586 0.88975 0.98390 1.06599 1.20858 0.91261 0.96254 1.02674 1.23341 0.95212 0.92894 1.00495 0.82663 1.24239 1.04345 0.97608 0.89827 1.27079 0.89051 0.89653 1.01193 1.98771 1.65640 1.46087 1.98433 1.98739 1.39902 1.98389 1.70593 1.68691 1.07170 1.25521 1.21406 0.92015 0.88037 0.84694 0.84950 0.74077 0.86451 0.85875 0.92028 0.92576 0.83549 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.66 8.99 21.84 0.20 -39.46 16 2 C 0.01 0.76 5.50 85.29 0.47 1.23 16 3 Si 0.97 41.41 29.56 68.60 2.03 43.44 16 4 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.47 -26.94 9.14 23.47 0.21 -26.72 16 8 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.24 13.79 6.55 40.21 0.26 14.05 16 10 C -0.33 -17.01 9.83 22.87 0.22 -16.78 16 11 C -0.04 -1.59 10.15 22.40 0.23 -1.36 16 12 C -0.35 -14.61 9.95 22.72 0.23 -14.39 16 13 C 0.35 16.61 7.43 133.23 0.99 17.60 16 14 N -0.66 -23.70 5.38 -308.38 -1.66 -25.36 16 15 C 0.45 16.70 7.79 87.66 0.68 17.38 16 16 O -0.46 -22.96 11.75 -3.00 -0.04 -23.00 16 17 C -0.12 -2.46 5.66 29.84 0.17 -2.29 16 18 C -0.07 -1.71 3.87 30.59 0.12 -1.59 16 19 C -0.10 -1.57 5.58 -10.79 -0.06 -1.63 16 20 H 0.16 1.62 8.08 -2.38 -0.02 1.60 16 21 C -0.12 -1.60 9.86 30.59 0.30 -1.30 16 22 C -0.02 -0.35 3.62 30.60 0.11 -0.24 16 23 Cl -0.12 -2.93 28.23 -2.72 -0.08 -3.01 16 24 Cl -0.10 -1.89 29.29 -2.72 -0.08 -1.96 16 25 N -0.51 -29.13 5.74 -186.35 -1.07 -30.20 16 26 H 0.27 14.69 8.29 -92.71 -0.77 13.92 16 27 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 28 H 0.14 4.72 8.06 -2.91 -0.02 4.69 16 29 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.42 10.51 8.70 -92.70 -0.81 9.70 16 31 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.12 1.77 8.14 -2.38 -0.02 1.76 16 33 H 0.06 1.71 7.83 -2.39 -0.02 1.69 16 34 H 0.06 1.69 7.98 -2.38 -0.02 1.67 16 35 H 0.15 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.12 1.66 8.03 -2.39 -0.02 1.65 16 Total: -1.00 -76.64 340.54 3.56 -73.08 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.32 Total: 22.51 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 3.94 Total: -16.03 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -2.53 Total: -95.02 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.04 Total: -23.00 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 17 Polarization: -4.82 SS G_CDS: -0.16 Total: -4.97 kcal Total: -76.64 3.56 -73.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.629 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds