Wall clock time and date at job start Tue Mar 31 2020 14:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 115.54819 * 2 1 4 4 C 1.50702 * 109.47325 * 294.24168 * 3 2 1 5 5 O 1.21267 * 119.99837 * 4.30934 * 4 3 2 6 6 N 1.34780 * 119.99892 * 184.31354 * 4 3 2 7 7 C 1.39270 * 119.99760 * 185.11868 * 6 4 3 8 8 C 1.39665 * 119.57483 * 174.47313 * 7 6 4 9 9 C 1.38656 * 119.49789 * 180.02562 * 8 7 6 10 10 C 1.38346 * 118.66633 * 359.97438 * 9 8 7 11 11 C 1.40574 * 119.13229 * 0.02562 * 10 9 8 12 12 C 1.41333 * 119.78893 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00015 * 359.97438 * 12 11 10 14 14 C 1.40033 * 120.00158 * 179.97438 * 12 11 10 15 15 N 1.30744 * 119.99756 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00205 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46805 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47089 * 120.00188 * 16 14 12 19 19 H 1.48497 * 109.47122 * 240.00234 * 16 14 12 20 20 N 1.31902 * 119.57446 * 354.49213 * 7 6 4 21 21 C 1.52997 * 117.49595 * 145.67068 * 2 1 3 22 22 C 1.52998 * 117.49581 * 214.32825 * 2 1 3 23 23 Cl 1.80296 * 117.50319 * 359.97438 * 22 2 1 24 24 Cl 1.80311 * 117.49564 * 144.99827 * 22 2 1 25 25 H 1.09001 * 109.47026 * 64.92555 * 1 2 3 26 26 H 1.09000 * 109.47280 * 184.91966 * 1 2 3 27 27 H 1.09001 * 109.47045 * 304.92554 * 1 2 3 28 28 H 1.09011 * 109.46987 * 174.24344 * 3 2 1 29 29 H 1.09000 * 109.47185 * 54.24546 * 3 2 1 30 30 H 0.96998 * 120.00017 * 5.11770 * 6 4 3 31 31 H 1.08004 * 120.25162 * 0.04112 * 8 7 6 32 32 H 1.08002 * 120.66635 * 179.97438 * 9 8 7 33 33 H 1.08007 * 120.43144 * 180.02562 * 10 9 8 34 34 H 0.97002 * 119.99905 * 179.97438 * 15 14 12 35 35 H 1.09005 * 117.49610 * 215.00552 * 21 2 1 36 36 H 1.08997 * 117.50372 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.8802 2.0852 -1.2955 5 8 1.1355 1.5708 -2.1027 6 7 2.4309 3.2872 -1.5571 7 6 2.0630 3.9871 -2.7036 8 6 2.5498 5.2801 -2.9078 9 6 2.1820 5.9757 -4.0496 10 6 1.3383 5.3616 -4.9578 11 6 0.8822 4.0581 -4.6953 12 6 0.0202 3.4174 -5.6139 13 1 -0.2864 3.9294 -6.5141 14 6 -0.4364 2.1188 -5.3571 15 7 -0.0657 1.4992 -4.2671 16 14 -1.5752 1.2717 -6.5717 17 1 -1.8420 2.1798 -7.7160 18 1 -0.9334 0.0274 -7.0669 19 1 -2.8548 0.9343 -5.8980 20 7 1.2591 3.4203 -3.5824 21 6 2.2364 -1.1207 0.7654 22 6 2.2364 -1.1208 -0.7653 23 17 1.2022 -2.3408 -1.5976 24 17 3.7829 -0.7137 -1.5983 25 1 -0.3633 0.4355 -0.9308 26 1 -0.3634 -1.0239 0.0881 27 1 -0.3633 0.5884 0.8426 28 1 3.2691 1.2672 0.1031 29 1 1.8048 1.9671 0.8340 30 1 3.0835 3.6648 -0.9468 31 1 3.2078 5.7348 -2.1820 32 1 2.5470 6.9767 -4.2263 33 1 1.0340 5.8770 -5.8569 34 1 -0.3823 0.5997 -4.0890 35 1 3.1713 -0.8746 1.2690 36 1 1.6112 -1.8583 1.2685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:12 Heat of formation + Delta-G solvation = 36.063505 kcal Electronic energy + Delta-G solvation = -23848.994187 eV Core-core repulsion = 20193.907851 eV Total energy + Delta-G solvation = -3655.086336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.62934 -38.37716 -37.07964 -35.80969 -35.51097 -34.01567 -32.93852 -30.34392 -29.90372 -28.72420 -27.69922 -25.43446 -22.31125 -22.21271 -21.22452 -19.77931 -18.82398 -17.65111 -16.33244 -16.11056 -15.89224 -15.24435 -14.61317 -14.40705 -14.36372 -13.68579 -13.50248 -13.00193 -12.98850 -12.73941 -12.43149 -12.19526 -12.00842 -11.84130 -11.54359 -11.38570 -11.35033 -11.10075 -10.94273 -10.90537 -10.60032 -10.54721 -10.43612 -10.14930 -9.87386 -9.60245 -9.48250 -8.96658 -8.81557 -7.91620 -7.15432 -6.91226 -6.09244 -4.34948 1.39773 2.34994 2.82112 3.10737 3.18594 3.21121 3.23886 3.29871 3.78004 3.88176 4.10342 4.17956 4.40899 4.79891 4.94861 5.01552 5.33610 5.44193 5.49814 5.63704 5.81332 5.93809 6.03199 6.09275 6.15971 6.52528 6.60158 6.73940 6.87941 6.89339 7.29258 7.59702 7.67301 7.85399 8.11543 8.24879 8.51922 8.79178 9.10032 9.33188 10.29290 10.52500 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.005706 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.859804 B = 4905.512257 C = 6467.685277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.114 4.114 4 C 0.471 3.529 5 O -0.392 6.392 6 N -0.668 5.668 7 C 0.374 3.626 8 C -0.359 4.359 9 C -0.037 4.037 10 C -0.307 4.307 11 C 0.271 3.729 12 C -0.424 4.424 13 H 0.081 0.919 14 C 0.059 3.941 15 N -0.648 5.648 16 Si 0.891 3.109 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.276 1.276 20 N -0.470 5.470 21 C -0.150 4.150 22 C 0.020 3.980 23 Cl -0.094 7.094 24 Cl -0.094 7.094 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.397 0.603 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.272 0.728 35 H 0.116 0.884 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -5.890 12.647 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.059 4.059 3 C -0.155 4.155 4 C 0.252 3.748 5 O -0.254 6.254 6 N -0.315 5.315 7 C 0.135 3.865 8 C -0.385 4.385 9 C -0.061 4.061 10 C -0.330 4.330 11 C 0.146 3.854 12 C -0.455 4.455 13 H 0.099 0.901 14 C -0.171 4.171 15 N -0.267 5.267 16 Si 0.715 3.285 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.201 1.201 20 N -0.189 5.189 21 C -0.187 4.187 22 C -0.031 4.031 23 Cl -0.066 7.066 24 Cl -0.067 7.067 25 H 0.117 0.883 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.230 0.770 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.217 -7.492 12.179 14.656 hybrid contribution 0.478 0.639 -0.453 0.917 sum 3.694 -6.853 11.726 14.075 Atomic orbital electron populations 1.21551 0.89589 1.02383 1.04710 1.21895 0.96896 0.89748 0.97405 1.21392 1.01598 0.93772 0.98741 1.20391 0.83753 0.82119 0.88526 1.91137 1.29200 1.61102 1.43987 1.43401 1.44406 1.19976 1.23755 1.18604 0.93021 0.87582 0.87292 1.20485 1.16787 0.97389 1.03866 1.20545 0.95318 0.96876 0.93346 1.21612 1.09740 0.99240 1.02422 1.18377 0.89965 0.87873 0.89184 1.19588 1.22871 0.98343 1.04667 0.90105 1.26134 0.97041 0.98020 0.95863 1.70304 1.27939 1.10033 1.18376 0.86538 0.80484 0.79895 0.81556 1.18690 1.20086 1.20103 1.68708 1.14533 1.33086 1.02588 1.24210 1.03660 1.01097 0.89774 1.26738 0.87713 0.98354 0.90342 1.98731 1.68298 1.58072 1.81533 1.98745 1.32951 1.93506 1.81475 0.88302 0.92187 0.91843 0.89249 0.88243 0.77045 0.89276 0.88810 0.88736 0.91641 0.86570 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.86 37.16 0.33 -1.36 16 2 C -0.06 -0.74 1.64 -154.51 -0.25 -0.99 16 3 C -0.11 -1.47 5.02 -27.88 -0.14 -1.61 16 4 C 0.47 8.79 7.51 -10.98 -0.08 8.71 16 5 O -0.39 -8.96 10.09 5.57 0.06 -8.90 16 6 N -0.67 -12.70 5.38 -11.40 -0.06 -12.76 16 7 C 0.37 8.97 7.43 -154.98 -1.15 7.82 16 8 C -0.36 -8.06 9.95 -38.89 -0.39 -8.45 16 9 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 10 C -0.31 -7.78 9.83 -38.66 -0.38 -8.16 16 11 C 0.27 7.59 6.55 -85.00 -0.56 7.03 16 12 C -0.42 -11.67 9.14 -37.73 -0.34 -12.01 16 13 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 14 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 15 N -0.65 -17.56 9.00 55.55 0.50 -17.06 16 16 Si 0.89 19.47 29.56 -169.99 -5.02 14.44 16 17 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 20 N -0.47 -12.95 5.74 -10.26 -0.06 -13.01 16 21 C -0.15 -1.48 9.59 -26.70 -0.26 -1.73 16 22 C 0.02 0.28 3.61 -26.70 -0.10 0.18 16 23 Cl -0.09 -1.40 27.80 -51.86 -1.44 -2.85 16 24 Cl -0.09 -1.44 27.67 -51.86 -1.43 -2.88 16 25 H 0.10 1.74 6.44 -51.93 -0.33 1.40 16 26 H 0.06 0.73 7.24 -51.93 -0.38 0.36 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.00 7.28 -51.92 -0.38 0.63 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.40 5.81 8.70 -40.82 -0.36 5.45 16 31 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.09 2.24 8.06 -52.48 -0.42 1.82 16 34 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 35 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -31.89 333.88 -10.20 -42.09 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.95 Total: 6.25 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.81 Total: -10.36 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.38 Total: -42.82 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.06 Total: -8.90 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -2.88 Total: -5.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.89 -10.20 -42.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.154 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds