Wall clock time and date at job start Tue Mar 31 2020 14:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 115.54819 * 2 1 4 4 C 1.50702 * 109.47325 * 294.24168 * 3 2 1 5 5 O 1.21267 * 119.99837 * 4.30934 * 4 3 2 6 6 N 1.34780 * 119.99892 * 184.31354 * 4 3 2 7 7 C 1.39270 * 119.99760 * 185.11868 * 6 4 3 8 8 C 1.39665 * 119.57483 * 174.47313 * 7 6 4 9 9 C 1.38656 * 119.49789 * 180.02562 * 8 7 6 10 10 C 1.38346 * 118.66633 * 359.97438 * 9 8 7 11 11 C 1.40574 * 119.13229 * 0.02562 * 10 9 8 12 12 C 1.41333 * 119.78893 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00015 * 359.97438 * 12 11 10 14 14 C 1.40033 * 120.00158 * 179.97438 * 12 11 10 15 15 N 1.30744 * 119.99756 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00205 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46805 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47089 * 120.00188 * 16 14 12 19 19 H 1.48497 * 109.47122 * 240.00234 * 16 14 12 20 20 N 1.31902 * 119.57446 * 354.49213 * 7 6 4 21 21 C 1.52997 * 117.49595 * 145.67068 * 2 1 3 22 22 C 1.52998 * 117.49581 * 214.32825 * 2 1 3 23 23 Cl 1.80296 * 117.50319 * 359.97438 * 22 2 1 24 24 Cl 1.80311 * 117.49564 * 144.99827 * 22 2 1 25 25 H 1.09001 * 109.47026 * 64.92555 * 1 2 3 26 26 H 1.09000 * 109.47280 * 184.91966 * 1 2 3 27 27 H 1.09001 * 109.47045 * 304.92554 * 1 2 3 28 28 H 1.09011 * 109.46987 * 174.24344 * 3 2 1 29 29 H 1.09000 * 109.47185 * 54.24546 * 3 2 1 30 30 H 0.96998 * 120.00017 * 5.11770 * 6 4 3 31 31 H 1.08004 * 120.25162 * 0.04112 * 8 7 6 32 32 H 1.08002 * 120.66635 * 179.97438 * 9 8 7 33 33 H 1.08007 * 120.43144 * 180.02562 * 10 9 8 34 34 H 0.97002 * 119.99905 * 179.97438 * 15 14 12 35 35 H 1.09005 * 117.49610 * 215.00552 * 21 2 1 36 36 H 1.08997 * 117.50372 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.8802 2.0852 -1.2955 5 8 1.1355 1.5708 -2.1027 6 7 2.4309 3.2872 -1.5571 7 6 2.0630 3.9871 -2.7036 8 6 2.5498 5.2801 -2.9078 9 6 2.1820 5.9757 -4.0496 10 6 1.3383 5.3616 -4.9578 11 6 0.8822 4.0581 -4.6953 12 6 0.0202 3.4174 -5.6139 13 1 -0.2864 3.9294 -6.5141 14 6 -0.4364 2.1188 -5.3571 15 7 -0.0657 1.4992 -4.2671 16 14 -1.5752 1.2717 -6.5717 17 1 -1.8420 2.1798 -7.7160 18 1 -0.9334 0.0274 -7.0669 19 1 -2.8548 0.9343 -5.8980 20 7 1.2591 3.4203 -3.5824 21 6 2.2364 -1.1207 0.7654 22 6 2.2364 -1.1208 -0.7653 23 17 1.2022 -2.3408 -1.5976 24 17 3.7829 -0.7137 -1.5983 25 1 -0.3633 0.4355 -0.9308 26 1 -0.3634 -1.0239 0.0881 27 1 -0.3633 0.5884 0.8426 28 1 3.2691 1.2672 0.1031 29 1 1.8048 1.9671 0.8340 30 1 3.0835 3.6648 -0.9468 31 1 3.2078 5.7348 -2.1820 32 1 2.5470 6.9767 -4.2263 33 1 1.0340 5.8770 -5.8569 34 1 -0.3823 0.5997 -4.0890 35 1 3.1713 -0.8746 1.2690 36 1 1.6112 -1.8583 1.2685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:12 Heat of formation + Delta-G solvation = 18.225856 kcal Electronic energy + Delta-G solvation = -23849.767685 eV Core-core repulsion = 20193.907851 eV Total energy + Delta-G solvation = -3655.859835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.03462 -39.82242 -38.56202 -36.90130 -36.61402 -35.76777 -34.72774 -32.18979 -31.43087 -30.07245 -28.90960 -27.32407 -23.91531 -23.21951 -23.06063 -21.24212 -20.10002 -19.39842 -17.89708 -17.53400 -17.10005 -16.54781 -16.27964 -16.17776 -15.69494 -15.45804 -14.78735 -14.68890 -14.33285 -13.98594 -13.88771 -13.66210 -13.19466 -13.04746 -12.94715 -12.71101 -12.69604 -12.51583 -12.46094 -12.42641 -12.28887 -12.05050 -11.73113 -11.66135 -11.41775 -11.20996 -10.77877 -10.51974 -10.31309 -9.82861 -8.98322 -8.72115 -8.00331 -6.36293 0.37359 0.98467 1.29436 1.30149 1.39108 1.50939 1.52001 2.16268 2.26988 2.31261 2.60040 3.04517 3.16718 3.44649 3.77165 4.01109 4.12628 4.19813 4.44699 4.63498 4.65895 4.69274 4.80373 4.86964 4.92566 4.95059 4.99680 5.05990 5.13740 5.33116 5.50813 5.73614 5.93689 5.97787 6.21128 6.44365 6.82648 6.93434 7.15288 7.87489 8.41565 8.60401 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.005706 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.859804 B = 4905.512257 C = 6467.685277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.071 4.071 3 C -0.100 4.100 4 C 0.458 3.542 5 O -0.435 6.435 6 N -0.660 5.660 7 C 0.354 3.646 8 C -0.351 4.351 9 C -0.036 4.036 10 C -0.335 4.335 11 C 0.239 3.761 12 C -0.465 4.465 13 H 0.079 0.921 14 C 0.016 3.984 15 N -0.673 5.673 16 Si 0.962 3.038 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.270 1.270 20 N -0.500 5.500 21 C -0.102 4.102 22 C -0.008 4.008 23 Cl -0.115 7.115 24 Cl -0.116 7.116 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.417 0.583 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.269 0.731 35 H 0.146 0.854 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 -5.756 15.242 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.073 4.073 3 C -0.140 4.140 4 C 0.242 3.758 5 O -0.300 6.300 6 N -0.310 5.310 7 C 0.115 3.885 8 C -0.376 4.376 9 C -0.060 4.060 10 C -0.358 4.358 11 C 0.114 3.886 12 C -0.496 4.496 13 H 0.098 0.902 14 C -0.211 4.211 15 N -0.291 5.291 16 Si 0.784 3.216 17 H -0.180 1.180 18 H -0.200 1.200 19 H -0.195 1.195 20 N -0.220 5.220 21 C -0.139 4.139 22 C -0.059 4.059 23 Cl -0.088 7.088 24 Cl -0.089 7.089 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.151 0.849 30 H 0.254 0.746 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.164 0.836 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.326 -7.336 14.821 17.094 hybrid contribution 0.244 0.716 -1.135 1.364 sum 4.571 -6.620 13.686 15.875 Atomic orbital electron populations 1.21428 0.90442 1.02755 1.02984 1.21974 0.96455 0.90201 0.98635 1.21368 1.03137 0.93471 0.96027 1.21459 0.82639 0.81649 0.90054 1.91152 1.30875 1.62001 1.45949 1.43468 1.44763 1.20163 1.22592 1.19143 0.92433 0.88776 0.88139 1.20973 1.15812 0.96685 1.04107 1.20996 0.93975 0.98385 0.92636 1.21767 1.11359 0.98979 1.03728 1.18825 0.90685 0.89203 0.89932 1.19831 1.24749 0.99645 1.05348 0.90242 1.26859 0.98352 0.98219 0.97630 1.70481 1.28961 1.09902 1.19781 0.85458 0.78373 0.78479 0.79300 1.18004 1.20021 1.19504 1.68692 1.15897 1.34217 1.03185 1.24407 1.04279 0.98576 0.86644 1.27180 0.87141 0.99295 0.92274 1.98723 1.68953 1.58817 1.82334 1.98736 1.34146 1.93690 1.82298 0.93024 0.91452 0.89826 0.86997 0.84862 0.74556 0.85327 0.85029 0.88333 0.92050 0.83584 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 8.86 71.98 0.64 -2.44 16 2 C -0.07 -1.65 1.64 -52.18 -0.09 -1.74 16 3 C -0.10 -2.28 5.02 29.85 0.15 -2.13 16 4 C 0.46 16.71 7.51 87.66 0.66 17.37 16 5 O -0.44 -20.34 10.09 -2.99 -0.03 -20.37 16 6 N -0.66 -24.16 5.38 -308.37 -1.66 -25.82 16 7 C 0.35 16.87 7.43 133.25 0.99 17.86 16 8 C -0.35 -14.99 9.95 22.71 0.23 -14.77 16 9 C -0.04 -1.58 10.15 22.40 0.23 -1.35 16 10 C -0.34 -17.29 9.83 22.87 0.22 -17.06 16 11 C 0.24 13.89 6.55 40.19 0.26 14.15 16 12 C -0.46 -26.81 9.14 23.47 0.21 -26.60 16 13 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 14 C 0.02 0.87 5.50 85.29 0.47 1.34 16 15 N -0.67 -38.18 9.00 21.84 0.20 -37.99 16 16 Si 0.96 41.72 29.56 68.60 2.03 43.75 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 N -0.50 -28.30 5.74 -186.37 -1.07 -29.37 16 21 C -0.10 -1.59 9.59 30.62 0.29 -1.30 16 22 C -0.01 -0.20 3.61 30.62 0.11 -0.09 16 23 Cl -0.12 -3.45 27.80 -2.72 -0.08 -3.53 16 24 Cl -0.12 -3.45 27.67 -2.72 -0.08 -3.52 16 25 H 0.05 1.87 6.44 -2.39 -0.02 1.85 16 26 H 0.07 1.58 7.24 -2.39 -0.02 1.56 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.11 2.07 7.28 -2.38 -0.02 2.05 16 29 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.42 11.04 8.70 -92.71 -0.81 10.24 16 31 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.27 14.56 8.29 -92.71 -0.77 13.79 16 35 H 0.15 1.49 8.14 -2.38 -0.02 1.48 16 36 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -74.57 333.88 4.02 -70.55 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.32 Total: 23.04 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.38 Total: -16.74 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -2.53 Total: -93.17 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.03 Total: -20.37 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 17 Polarization: -6.90 SS G_CDS: -0.15 Total: -7.05 kcal Total: -74.57 4.02 -70.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.777 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds