Wall clock time and date at job start Tue Mar 31 2020 14:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 115.55048 * 2 1 4 4 C 1.50703 * 109.47204 * 66.09341 * 3 2 1 5 5 O 1.21271 * 119.99539 * 356.77093 * 4 3 2 6 6 N 1.34777 * 120.00125 * 177.05242 * 4 3 2 7 7 C 1.39268 * 119.99872 * 185.19279 * 6 4 3 8 8 C 1.39673 * 119.57427 * 185.80766 * 7 6 4 9 9 C 1.38649 * 119.49932 * 179.97438 * 8 7 6 10 10 C 1.38347 * 118.66537 * 0.02562 * 9 8 7 11 11 C 1.40576 * 119.13330 * 359.97438 * 10 9 8 12 12 C 1.41333 * 119.79177 * 180.02562 * 11 10 9 13 13 H 1.08009 * 119.99709 * 359.97438 * 12 11 10 14 14 C 1.40029 * 120.00366 * 179.97438 * 12 11 10 15 15 N 1.30743 * 119.99743 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00050 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47029 * 60.00646 * 16 14 12 18 18 H 1.48507 * 109.47240 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47436 * 300.00445 * 16 14 12 20 20 N 1.31901 * 119.57502 * 5.54272 * 7 6 4 21 21 C 1.53000 * 117.49570 * 214.33274 * 2 1 3 22 22 C 1.52997 * 117.49884 * 145.67276 * 2 1 3 23 23 Cl 1.80299 * 117.50013 * 214.99956 * 22 2 1 24 24 Cl 1.80303 * 117.49880 * 359.97438 * 22 2 1 25 25 H 1.08994 * 109.47031 * 57.08788 * 1 2 3 26 26 H 1.08994 * 109.47321 * 177.09603 * 1 2 3 27 27 H 1.09003 * 109.46719 * 297.09148 * 1 2 3 28 28 H 1.09000 * 109.47058 * 306.08903 * 3 2 1 29 29 H 1.09004 * 109.47164 * 186.09165 * 3 2 1 30 30 H 0.96995 * 120.00008 * 5.19762 * 6 4 3 31 31 H 1.08001 * 120.24903 * 359.96253 * 8 7 6 32 32 H 1.08001 * 120.66865 * 180.02562 * 9 8 7 33 33 H 1.08003 * 120.43467 * 179.97438 * 10 9 8 34 34 H 0.97001 * 119.99862 * 179.97438 * 15 14 12 35 35 H 1.08998 * 117.50121 * 359.96878 * 21 2 1 36 36 H 1.09003 * 117.49990 * 144.99660 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 1.8871 2.0819 1.2989 5 8 1.1623 1.5566 2.1171 6 7 2.4172 3.2956 1.5489 7 6 2.2266 3.8963 2.7908 8 6 2.6740 5.2027 3.0005 9 6 2.4830 5.7995 4.2374 10 6 1.8505 5.0761 5.2327 11 6 1.4232 3.7650 4.9595 12 6 0.7752 3.0136 5.9659 13 1 0.6100 3.4469 6.9414 14 6 0.3472 1.7074 5.6985 15 7 0.5475 1.1828 4.5178 16 14 -0.5087 0.7141 7.0289 17 1 -1.7461 1.4173 7.4529 18 1 -0.8587 -0.6276 6.4971 19 1 0.3987 0.5627 8.1947 20 7 1.6211 3.2262 3.7521 21 6 2.2364 -1.1207 -0.7654 22 6 2.2364 -1.1207 0.7653 23 17 3.7829 -0.7138 1.5982 24 17 1.2022 -2.3400 1.5987 25 1 -0.3633 0.5584 -0.8627 26 1 -0.3633 -1.0263 -0.0521 27 1 -0.3633 0.4680 0.9150 28 1 1.8005 1.9692 -0.8305 29 1 3.2686 1.2674 -0.1091 30 1 2.9315 3.7506 0.8638 31 1 3.1653 5.7438 2.2054 32 1 2.8210 6.8088 4.4201 33 1 1.6873 5.5129 6.2069 34 1 0.2514 0.2778 4.3326 35 1 1.6111 -1.8583 -1.2686 36 1 3.1713 -0.8747 -1.2690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:15 Heat of formation + Delta-G solvation = 17.238697 kcal Electronic energy + Delta-G solvation = -23905.557834 eV Core-core repulsion = 20249.655193 eV Total energy + Delta-G solvation = -3655.902641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03186 -39.81600 -38.55715 -36.88001 -36.59682 -35.76440 -34.72686 -32.18553 -31.42782 -30.06751 -28.91537 -27.31681 -23.91273 -23.20711 -23.05717 -21.23864 -20.10444 -19.38199 -17.87941 -17.53598 -17.08096 -16.54903 -16.33419 -16.20463 -15.64923 -15.42951 -14.76392 -14.67056 -14.37336 -13.98398 -13.88838 -13.66741 -13.16958 -13.06019 -12.91387 -12.72256 -12.68111 -12.54468 -12.45184 -12.41183 -12.28561 -12.02919 -11.77449 -11.64132 -11.39818 -11.20053 -10.77692 -10.50378 -10.31233 -9.82279 -9.01600 -8.69849 -8.00166 -6.35869 0.40182 0.99441 1.30799 1.31209 1.38517 1.48483 1.52528 2.15763 2.26890 2.33175 2.60832 3.04990 3.17914 3.45340 3.77167 4.01555 4.13062 4.20394 4.44958 4.63460 4.66538 4.68685 4.80471 4.86951 4.92620 4.95417 4.99859 5.06542 5.14017 5.33918 5.48042 5.73789 5.93777 5.97995 6.20847 6.44556 6.82866 6.93952 7.15516 7.87030 8.42015 8.60373 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.005950 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.534280 B = 4704.973337 C = 6280.047770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 C -0.101 4.101 4 C 0.461 3.539 5 O -0.438 6.438 6 N -0.661 5.661 7 C 0.355 3.645 8 C -0.351 4.351 9 C -0.036 4.036 10 C -0.336 4.336 11 C 0.240 3.760 12 C -0.466 4.466 13 H 0.079 0.921 14 C 0.017 3.983 15 N -0.671 5.671 16 Si 0.961 3.039 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.264 1.264 20 N -0.500 5.500 21 C -0.103 4.103 22 C -0.007 4.007 23 Cl -0.117 7.117 24 Cl -0.116 7.116 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.137 0.863 29 H 0.109 0.891 30 H 0.418 0.582 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.269 0.731 35 H 0.141 0.859 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -4.934 -16.022 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.072 4.072 3 C -0.140 4.140 4 C 0.245 3.755 5 O -0.303 6.303 6 N -0.311 5.311 7 C 0.116 3.884 8 C -0.376 4.376 9 C -0.060 4.060 10 C -0.359 4.359 11 C 0.114 3.886 12 C -0.496 4.496 13 H 0.097 0.903 14 C -0.210 4.210 15 N -0.290 5.290 16 Si 0.783 3.217 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.188 1.188 20 N -0.220 5.220 21 C -0.140 4.140 22 C -0.059 4.059 23 Cl -0.090 7.090 24 Cl -0.089 7.089 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.155 0.845 29 H 0.127 0.873 30 H 0.255 0.745 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.159 0.841 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.801 -6.537 -15.604 17.148 hybrid contribution 0.312 0.687 1.204 1.421 sum 3.113 -5.850 -14.400 15.851 Atomic orbital electron populations 1.21425 0.90298 1.02856 1.02958 1.21981 0.96532 0.90188 0.98536 1.21370 1.03069 0.93557 0.96051 1.21416 0.82298 0.81616 0.90168 1.91118 1.31022 1.62666 1.45528 1.43458 1.54886 1.19922 1.12787 1.19126 0.92725 0.89207 0.87355 1.20973 1.19867 0.96509 1.00258 1.20991 0.94269 0.98387 0.92363 1.21764 1.15294 0.98243 1.00570 1.18799 0.89801 0.89818 0.90144 1.19773 1.33214 0.98506 0.98151 0.90253 1.26831 0.97020 0.99042 0.98130 1.70438 1.26899 1.12522 1.19119 0.85592 0.79378 0.77577 0.79189 1.18598 1.20093 1.18816 1.68655 1.19254 1.34258 0.99806 1.24405 1.04260 0.98655 0.86654 1.27163 0.87182 0.99338 0.92169 1.98742 1.34221 1.93686 1.82320 1.98721 1.68954 1.58897 1.82323 0.89401 0.91531 0.93194 0.84536 0.87254 0.74512 0.85329 0.85053 0.88352 0.92050 0.84105 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 8.93 71.98 0.64 -2.32 16 2 C -0.07 -1.65 1.62 -52.18 -0.08 -1.73 16 3 C -0.10 -2.28 5.02 29.85 0.15 -2.13 16 4 C 0.46 16.78 7.48 87.66 0.66 17.43 16 5 O -0.44 -20.46 10.29 -3.00 -0.03 -20.49 16 6 N -0.66 -24.11 5.38 -308.37 -1.66 -25.77 16 7 C 0.36 16.90 7.41 133.25 0.99 17.89 16 8 C -0.35 -15.02 9.95 22.71 0.23 -14.79 16 9 C -0.04 -1.59 10.15 22.39 0.23 -1.37 16 10 C -0.34 -17.34 9.83 22.87 0.22 -17.12 16 11 C 0.24 13.96 6.55 40.19 0.26 14.22 16 12 C -0.47 -26.92 9.14 23.47 0.21 -26.70 16 13 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 14 C 0.02 0.91 5.50 85.29 0.47 1.38 16 15 N -0.67 -38.22 9.11 21.84 0.20 -38.02 16 16 Si 0.96 41.98 29.56 68.60 2.03 44.00 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 20 N -0.50 -28.30 5.74 -186.36 -1.07 -29.37 16 21 C -0.10 -1.64 9.60 30.62 0.29 -1.35 16 22 C -0.01 -0.20 3.60 30.62 0.11 -0.09 16 23 Cl -0.12 -3.67 27.66 -2.72 -0.08 -3.74 16 24 Cl -0.12 -3.55 27.75 -2.72 -0.08 -3.62 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.54 7.15 -2.39 -0.02 1.53 16 27 H 0.05 1.75 6.46 -2.39 -0.02 1.73 16 28 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.11 2.11 7.29 -2.38 -0.02 2.09 16 30 H 0.42 10.95 8.70 -92.71 -0.81 10.14 16 31 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 33 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.27 14.74 8.29 -92.71 -0.77 13.97 16 35 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -74.97 334.08 4.02 -70.95 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.32 Total: 22.75 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.38 Total: -16.67 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -2.53 Total: -93.17 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.03 Total: -20.49 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 17 Polarization: -7.22 SS G_CDS: -0.15 Total: -7.37 kcal Total: -74.97 4.02 -70.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.186 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds