Wall clock time and date at job start Tue Mar 31 2020 15:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47448 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47133 * 299.99956 * 3 2 1 6 6 H 1.48504 * 109.47531 * 59.99944 * 3 2 1 7 7 C 1.37875 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99460 * 172.19184 * 7 2 1 9 9 C 1.50696 * 120.00157 * 352.19396 * 7 2 1 10 10 C 1.52998 * 115.55029 * 294.78022 * 9 7 2 11 11 N 1.46506 * 109.47334 * 275.60469 * 10 9 7 12 12 C 1.34771 * 120.00010 * 185.00690 * 11 10 9 13 13 O 1.21587 * 120.00116 * 4.90405 * 12 11 10 14 14 N 1.34780 * 119.99596 * 184.63574 * 12 11 10 15 15 C 1.48145 * 127.83970 * 354.94758 * 14 12 11 16 16 C 1.54789 * 104.41544 * 140.37403 * 15 14 12 17 17 H 1.09003 * 117.76550 * 244.96737 * 16 15 14 18 18 C 1.57109 * 118.02460 * 86.47663 * 16 15 14 19 19 H 1.09004 * 118.46993 * 15.76750 * 18 16 15 20 20 Br 1.96602 * 116.95994 * 161.36226 * 18 16 15 21 21 C 1.52993 * 59.65417 * 268.89996 * 18 16 15 22 22 H 1.08995 * 119.54500 * 247.55144 * 21 18 16 23 23 C 1.48144 * 127.83434 * 175.27397 * 14 12 11 24 24 C 1.52997 * 117.51868 * 80.48208 * 9 7 2 25 25 C 1.52998 * 60.00184 * 107.47900 * 24 9 7 26 26 H 0.96998 * 119.99589 * 5.00331 * 1 2 3 27 27 H 1.08996 * 109.47332 * 155.60224 * 10 9 7 28 28 H 1.09007 * 109.47125 * 35.60223 * 10 9 7 29 29 H 0.97001 * 119.99319 * 5.00234 * 11 10 9 30 30 H 1.09000 * 110.40428 * 259.20067 * 15 14 12 31 31 H 1.09002 * 110.40391 * 21.63151 * 15 14 12 32 32 H 1.09002 * 110.41131 * 338.36148 * 23 14 12 33 33 H 1.08998 * 110.41493 * 100.79572 * 23 14 12 34 34 H 1.09003 * 117.50231 * 214.97108 * 24 9 7 35 35 H 1.09003 * 117.49611 * 359.97438 * 24 9 7 36 36 H 1.08994 * 117.50259 * 252.51090 * 25 24 9 37 37 H 1.09003 * 117.49795 * 107.48378 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0770 -1.1982 -0.1276 9 6 1.2615 -2.4931 0.1761 10 6 0.5849 -2.6869 1.5346 11 7 1.5577 -3.2160 2.4938 12 6 1.1611 -3.5620 3.7345 13 8 -0.0176 -3.5197 4.0298 14 7 2.0704 -3.9601 4.6461 15 6 3.5218 -4.1794 4.4461 16 6 4.1766 -3.6231 5.7337 17 1 4.8272 -2.7538 5.6376 18 6 4.3053 -4.5832 6.9706 19 1 4.1796 -5.6543 6.8122 20 35 5.6036 -4.0797 8.3584 21 6 3.0697 -3.6961 6.8059 22 1 2.8955 -2.8812 7.5085 23 6 1.8440 -4.2841 6.0738 24 6 0.5622 -3.0801 -1.0515 25 6 1.8353 -3.7341 -0.5107 26 1 -0.4849 0.8369 -0.0733 27 1 -0.2425 -3.3889 1.4316 28 1 0.2064 -1.7291 1.8919 29 1 2.4873 -3.3173 2.2358 30 1 3.7341 -5.2431 4.3380 31 1 3.8723 -3.6302 3.5723 32 1 0.9273 -3.8139 6.4296 33 1 1.7983 -5.3638 6.2161 34 1 -0.3800 -3.6043 -0.8915 35 1 0.6391 -2.5264 -1.9873 36 1 2.7499 -3.6108 -1.0906 37 1 1.7306 -4.6885 0.0053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884313862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:02 Heat of formation + Delta-G solvation = 41.523469 kcal Electronic energy + Delta-G solvation = -20087.551909 eV Core-core repulsion = 16913.398579 eV Total energy + Delta-G solvation = -3174.153330 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34184 -38.41554 -36.68903 -33.74363 -33.07387 -32.06799 -30.33110 -28.71401 -26.77040 -25.58606 -24.32291 -21.63733 -21.25760 -20.46977 -19.52989 -19.36249 -17.92222 -16.20826 -15.84481 -15.63056 -15.29065 -14.71504 -14.29245 -13.91558 -13.73567 -13.41530 -13.00725 -12.69775 -12.48786 -12.03812 -11.82490 -11.72230 -11.56585 -11.22917 -11.01621 -10.95757 -10.91313 -10.53770 -10.33341 -10.16491 -9.89519 -9.71567 -9.48753 -9.07611 -8.74160 -8.62628 -8.24894 -8.04321 -6.10640 -4.17455 1.20823 2.81784 2.86808 3.23759 3.33210 3.34794 3.60116 4.04665 4.13924 4.33306 4.37385 4.54724 4.75664 4.80397 5.11938 5.18455 5.32724 5.35273 5.46855 5.63739 5.74531 5.77566 5.97157 6.16130 6.29063 6.44420 6.59722 6.64533 6.84989 7.02647 7.27237 7.34722 7.48179 7.50463 7.82002 8.32014 8.48810 8.82195 9.08469 9.47737 10.97128 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.002994 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.862789 B = 9350.835313 C =10113.945847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.035 3.965 10 C 0.181 3.819 11 N -0.722 5.722 12 C 0.723 3.277 13 O -0.594 6.594 14 N -0.646 5.646 15 C 0.130 3.870 16 C -0.148 4.148 17 H 0.136 0.864 18 C -0.091 4.091 19 H 0.141 0.859 20 Br -0.113 7.113 21 C -0.149 4.149 22 H 0.130 0.870 23 C 0.152 3.848 24 C -0.164 4.164 25 C -0.208 4.208 26 H 0.262 0.738 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.393 0.607 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.226 -10.131 15.180 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.034 3.966 10 C 0.058 3.942 11 N -0.375 5.375 12 C 0.426 3.574 13 O -0.472 6.472 14 N -0.386 5.386 15 C 0.005 3.995 16 C -0.168 4.168 17 H 0.153 0.847 18 C -0.188 4.188 19 H 0.158 0.842 20 Br -0.031 7.031 21 C -0.170 4.170 22 H 0.148 0.852 23 C 0.028 3.972 24 C -0.202 4.202 25 C -0.245 4.245 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.227 0.773 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.491 -9.712 15.796 21.305 hybrid contribution 0.697 0.833 -0.409 1.160 sum 11.188 -8.879 15.388 20.995 Atomic orbital electron populations 1.69973 1.05904 1.26947 1.48107 1.24985 0.94798 0.98999 0.94356 0.86574 0.80160 0.83800 0.77696 1.19722 1.20992 1.20895 1.20455 0.93202 0.88729 1.51348 0.92081 1.19076 0.97729 0.91451 0.88378 1.20935 0.88367 0.97692 0.87223 1.45342 1.13417 1.67686 1.11024 1.15459 0.83672 0.77875 0.80432 1.90899 1.15067 1.61680 1.79562 1.48322 1.07415 1.72932 1.09949 1.21854 0.80720 1.00661 0.96217 1.24749 1.01917 1.00883 0.89248 0.84662 1.26295 0.97135 0.99808 0.95561 0.84154 1.97378 1.58976 1.93661 1.53054 1.24067 0.89969 1.01602 1.01325 0.85197 1.21527 0.96672 0.99427 0.79568 1.22710 0.93374 1.03571 1.00563 1.22878 0.97832 0.96930 1.06892 0.92777 0.94170 0.90373 0.77283 0.90635 0.89091 0.88842 0.91050 0.91597 0.89949 0.90398 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.16 12.60 55.43 0.70 -23.46 16 2 C 0.07 1.92 5.22 -17.82 -0.09 1.83 16 3 Si 0.89 20.47 29.55 -169.99 -5.02 15.44 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -12.80 8.82 -34.44 -0.30 -13.10 16 8 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 9 C 0.03 0.80 1.32 -155.66 -0.21 0.60 16 10 C 0.18 4.17 5.53 -4.04 -0.02 4.15 16 11 N -0.72 -14.00 5.44 -65.22 -0.35 -14.35 16 12 C 0.72 13.89 8.56 -86.92 -0.74 13.15 16 13 O -0.59 -13.79 16.63 5.29 0.09 -13.70 16 14 N -0.65 -9.16 3.31 -174.76 -0.58 -9.74 16 15 C 0.13 1.34 6.81 -2.19 -0.01 1.33 16 16 C -0.15 -1.34 7.15 -86.78 -0.62 -1.96 16 17 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.09 -0.72 6.74 -24.51 -0.17 -0.89 16 19 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 20 Br -0.11 -0.98 34.19 -68.01 -2.33 -3.30 16 21 C -0.15 -1.38 6.80 -89.22 -0.61 -1.99 16 22 H 0.13 1.19 8.14 -51.93 -0.42 0.76 16 23 C 0.15 1.73 6.82 -2.41 -0.02 1.72 16 24 C -0.16 -3.65 9.88 -26.73 -0.26 -3.92 16 25 C -0.21 -4.17 9.78 -26.73 -0.26 -4.43 16 26 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 27 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 28 H 0.08 2.09 7.26 -51.93 -0.38 1.71 16 29 H 0.39 6.77 6.78 -40.82 -0.28 6.50 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.95 6.79 -51.93 -0.35 0.60 16 32 H 0.09 1.19 7.93 -51.93 -0.41 0.78 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 35 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -29.85 332.43 -10.98 -40.82 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.17 Total: 6.79 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -3.32 Total: -3.52 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.24 Total: -47.55 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -2.33 Total: -3.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.85 -10.98 -40.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884313862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.347 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds