Wall clock time and date at job start Tue Mar 31 2020 15:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47448 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47133 * 299.99956 * 3 2 1 6 6 H 1.48504 * 109.47531 * 59.99944 * 3 2 1 7 7 C 1.37875 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99460 * 172.19184 * 7 2 1 9 9 C 1.50696 * 120.00157 * 352.19396 * 7 2 1 10 10 C 1.52998 * 115.55029 * 294.78022 * 9 7 2 11 11 N 1.46506 * 109.47334 * 275.60469 * 10 9 7 12 12 C 1.34771 * 120.00010 * 185.00690 * 11 10 9 13 13 O 1.21587 * 120.00116 * 4.90405 * 12 11 10 14 14 N 1.34780 * 119.99596 * 184.63574 * 12 11 10 15 15 C 1.48145 * 127.83970 * 354.94758 * 14 12 11 16 16 C 1.54789 * 104.41544 * 140.37403 * 15 14 12 17 17 H 1.09003 * 117.76550 * 244.96737 * 16 15 14 18 18 C 1.57109 * 118.02460 * 86.47663 * 16 15 14 19 19 H 1.09004 * 118.46993 * 15.76750 * 18 16 15 20 20 Br 1.96602 * 116.95994 * 161.36226 * 18 16 15 21 21 C 1.52993 * 59.65417 * 268.89996 * 18 16 15 22 22 H 1.08995 * 119.54500 * 247.55144 * 21 18 16 23 23 C 1.48144 * 127.83434 * 175.27397 * 14 12 11 24 24 C 1.52997 * 117.51868 * 80.48208 * 9 7 2 25 25 C 1.52998 * 60.00184 * 107.47900 * 24 9 7 26 26 H 0.96998 * 119.99589 * 5.00331 * 1 2 3 27 27 H 1.08996 * 109.47332 * 155.60224 * 10 9 7 28 28 H 1.09007 * 109.47125 * 35.60223 * 10 9 7 29 29 H 0.97001 * 119.99319 * 5.00234 * 11 10 9 30 30 H 1.09000 * 110.40428 * 259.20067 * 15 14 12 31 31 H 1.09002 * 110.40391 * 21.63151 * 15 14 12 32 32 H 1.09002 * 110.41131 * 338.36148 * 23 14 12 33 33 H 1.08998 * 110.41493 * 100.79572 * 23 14 12 34 34 H 1.09003 * 117.50231 * 214.97108 * 24 9 7 35 35 H 1.09003 * 117.49611 * 359.97438 * 24 9 7 36 36 H 1.08994 * 117.50259 * 252.51090 * 25 24 9 37 37 H 1.09003 * 117.49795 * 107.48378 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0770 -1.1982 -0.1276 9 6 1.2615 -2.4931 0.1761 10 6 0.5849 -2.6869 1.5346 11 7 1.5577 -3.2160 2.4938 12 6 1.1611 -3.5620 3.7345 13 8 -0.0176 -3.5197 4.0298 14 7 2.0704 -3.9601 4.6461 15 6 3.5218 -4.1794 4.4461 16 6 4.1766 -3.6231 5.7337 17 1 4.8272 -2.7538 5.6376 18 6 4.3053 -4.5832 6.9706 19 1 4.1796 -5.6543 6.8122 20 35 5.6036 -4.0797 8.3584 21 6 3.0697 -3.6961 6.8059 22 1 2.8955 -2.8812 7.5085 23 6 1.8440 -4.2841 6.0738 24 6 0.5622 -3.0801 -1.0515 25 6 1.8353 -3.7341 -0.5107 26 1 -0.4849 0.8369 -0.0733 27 1 -0.2425 -3.3889 1.4316 28 1 0.2064 -1.7291 1.8919 29 1 2.4873 -3.3173 2.2358 30 1 3.7341 -5.2431 4.3380 31 1 3.8723 -3.6302 3.5723 32 1 0.9273 -3.8139 6.4296 33 1 1.7983 -5.3638 6.2161 34 1 -0.3800 -3.6043 -0.8915 35 1 0.6391 -2.5264 -1.9873 36 1 2.7499 -3.6108 -1.0906 37 1 1.7306 -4.6885 0.0053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884313862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:02 Heat of formation + Delta-G solvation = 24.400138 kcal Electronic energy + Delta-G solvation = -20088.294433 eV Core-core repulsion = 16913.398579 eV Total energy + Delta-G solvation = -3174.895854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.48158 -39.72567 -38.40406 -35.12554 -34.41352 -34.02457 -31.08783 -29.62171 -28.31886 -27.35631 -25.71053 -23.01323 -22.36344 -21.37595 -21.11442 -20.88968 -19.29514 -17.96953 -17.08000 -16.87251 -16.58365 -16.41686 -15.80285 -15.29731 -15.07167 -14.78825 -14.41393 -13.93811 -13.61663 -13.43552 -13.34505 -12.93612 -12.84073 -12.80657 -12.67694 -12.32499 -12.04693 -11.96564 -11.75085 -11.46986 -11.26693 -10.95594 -10.73827 -10.52730 -10.51458 -10.16368 -10.06077 -9.51420 -8.10757 -6.21894 0.53241 1.40673 1.44920 1.53755 1.57841 2.11355 2.15406 2.42125 3.02862 3.16901 3.29229 3.42878 3.57234 3.65198 3.96459 4.07685 4.23172 4.38338 4.55529 4.59973 4.65424 4.66924 4.72457 4.78942 4.94914 4.97937 5.00921 5.02489 5.20436 5.26979 5.57461 5.58743 5.69880 5.82447 6.09676 6.37171 6.83452 7.06079 7.46003 7.60129 8.97011 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.002994 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.862789 B = 9350.835313 C =10113.945847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.289 1.289 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.010 3.990 10 C 0.201 3.799 11 N -0.716 5.716 12 C 0.719 3.281 13 O -0.642 6.642 14 N -0.644 5.644 15 C 0.126 3.874 16 C -0.147 4.147 17 H 0.138 0.862 18 C -0.068 4.068 19 H 0.162 0.838 20 Br -0.116 7.116 21 C -0.151 4.151 22 H 0.130 0.870 23 C 0.148 3.852 24 C -0.175 4.175 25 C -0.170 4.170 26 H 0.259 0.741 27 H 0.027 0.973 28 H 0.033 0.967 29 H 0.405 0.595 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.772 -11.435 15.839 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.216 1.216 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.009 3.991 10 C 0.077 3.923 11 N -0.370 5.370 12 C 0.421 3.579 13 O -0.525 6.525 14 N -0.383 5.383 15 C 0.004 3.996 16 C -0.168 4.168 17 H 0.156 0.844 18 C -0.165 4.165 19 H 0.180 0.820 20 Br -0.034 7.034 21 C -0.172 4.172 22 H 0.148 0.852 23 C 0.025 3.975 24 C -0.214 4.214 25 C -0.207 4.207 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.241 0.759 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.123 -11.043 16.483 23.788 hybrid contribution -0.063 1.191 -0.552 1.314 sum 13.060 -9.852 15.931 22.835 Atomic orbital electron populations 1.70097 1.07317 1.27346 1.49738 1.25692 0.95409 1.02082 0.94437 0.85655 0.79588 0.80158 0.77146 1.18415 1.20928 1.21565 1.20768 0.93432 0.89786 1.50171 0.91821 1.19046 0.99157 0.92396 0.88527 1.20388 0.88828 0.95182 0.87941 1.45046 1.13308 1.67714 1.10920 1.15584 0.83735 0.77769 0.80776 1.90858 1.17548 1.63652 1.80431 1.48302 1.08527 1.71256 1.10188 1.22113 0.78103 1.02499 0.96906 1.24706 1.01734 1.01559 0.88777 0.84382 1.26325 0.95437 1.00509 0.94185 0.82015 1.97407 1.58992 1.93819 1.53226 1.23926 0.89425 1.02295 1.01528 0.85197 1.21701 0.96896 1.00815 0.78069 1.22674 0.94946 1.04252 0.99519 1.22882 0.96843 0.96255 1.04687 0.93147 0.95451 0.94862 0.75856 0.87846 0.89098 0.90864 0.88651 0.91257 0.91363 0.89176 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.55 12.60 21.45 0.27 -51.28 16 2 C 0.02 1.30 5.22 84.65 0.44 1.74 16 3 Si 0.95 42.18 29.55 68.60 2.03 44.21 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 7 C -0.50 -25.66 8.82 25.60 0.23 -25.43 16 8 H 0.06 3.14 7.83 -2.91 -0.02 3.12 16 9 C 0.01 0.44 1.32 -52.93 -0.07 0.37 16 10 C 0.20 9.50 5.53 86.38 0.48 9.97 16 11 N -0.72 -27.58 5.44 -478.53 -2.60 -30.19 16 12 C 0.72 27.66 8.56 179.06 1.53 29.20 16 13 O -0.64 -30.72 16.63 -3.99 -0.07 -30.79 16 14 N -0.64 -17.41 3.31 -825.09 -2.73 -20.14 16 15 C 0.13 2.26 6.81 86.67 0.59 2.85 16 16 C -0.15 -2.26 7.15 -8.30 -0.06 -2.32 16 17 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 18 C -0.07 -0.85 6.74 32.04 0.22 -0.63 16 19 H 0.16 1.42 8.14 -2.38 -0.02 1.40 16 20 Br -0.12 -1.73 34.19 -20.37 -0.70 -2.43 16 21 C -0.15 -2.46 6.80 -9.89 -0.07 -2.53 16 22 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 23 C 0.15 3.15 6.82 86.54 0.59 3.74 16 24 C -0.18 -7.78 9.88 30.59 0.30 -7.48 16 25 C -0.17 -6.43 9.78 30.59 0.30 -6.13 16 26 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 27 H 0.03 1.33 7.87 -2.39 -0.02 1.31 16 28 H 0.03 1.86 7.26 -2.38 -0.02 1.84 16 29 H 0.41 13.38 6.78 -92.71 -0.63 12.75 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.66 6.79 -2.39 -0.02 1.64 16 32 H 0.07 1.87 7.93 -2.39 -0.02 1.85 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 2.98 8.06 -2.39 -0.02 2.96 16 35 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -65.95 332.43 1.13 -64.82 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.45 Total: 22.45 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 4.48 Total: 3.35 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -5.06 Total: -101.61 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.07 Total: -30.79 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 35 Polarization: -1.73 SS G_CDS: -0.70 Total: -2.43 kcal Total: -65.95 1.13 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884313862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.223 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds