Wall clock time and date at job start Tue Mar 31 2020 14:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48499 * 109.46977 * 273.82046 * 3 2 1 5 5 H 1.48500 * 109.47443 * 33.81871 * 3 2 1 6 6 H 1.48503 * 109.46980 * 153.82288 * 3 2 1 7 7 C 1.38890 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00008 * 333.59321 * 7 2 1 9 9 N 1.37212 * 120.00032 * 153.32033 * 7 2 1 10 10 C 1.34774 * 119.99943 * 128.98913 * 9 7 2 11 11 O 1.21275 * 119.99786 * 180.02562 * 10 9 7 12 12 C 1.50699 * 120.00171 * 359.97438 * 10 9 7 13 13 C 1.53002 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46772 * 180.02562 * 13 12 10 15 15 H 1.08999 * 115.54974 * 29.33324 * 14 13 12 16 16 C 1.52998 * 117.49830 * 174.99630 * 14 13 12 17 17 C 1.52995 * 117.49791 * 243.61887 * 14 13 12 18 18 Cl 1.80300 * 117.49987 * 0.02562 * 17 14 13 19 19 Cl 1.80304 * 117.49935 * 145.02347 * 17 14 13 20 20 C 1.39424 * 119.99977 * 308.98713 * 9 7 2 21 21 C 1.39069 * 119.69793 * 347.45538 * 20 9 7 22 22 C 1.38381 * 119.10326 * 179.97438 * 21 20 9 23 23 C 1.38826 * 118.48836 * 359.97438 * 22 21 20 24 24 C 1.38147 * 119.31304 * 0.02562 * 23 22 21 25 25 N 1.31886 * 120.85365 * 359.74485 * 24 23 22 26 26 H 0.96997 * 119.99808 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47407 * 300.00073 * 12 10 9 28 28 H 1.09000 * 109.47300 * 60.00123 * 12 10 9 29 29 H 1.08998 * 109.46938 * 299.99502 * 13 12 10 30 30 H 1.08996 * 109.47357 * 60.00530 * 13 12 10 31 31 H 1.09002 * 117.50566 * 214.98111 * 16 14 13 32 32 H 1.09008 * 117.49930 * 0.02562 * 16 14 13 33 33 H 1.08005 * 120.45164 * 359.95145 * 21 20 9 34 34 H 1.07993 * 120.75647 * 179.97438 * 22 21 20 35 35 H 1.08003 * 120.34791 * 179.97438 * 23 22 21 36 36 H 1.08006 * 119.57528 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4149 2.0930 -1.3970 5 1 1.4884 2.6281 0.7792 6 1 3.5839 1.4182 0.6177 7 6 2.0086 -1.2028 0.0005 8 1 1.5531 -2.0892 0.4169 9 7 3.2712 -1.2664 -0.5330 10 6 4.2779 -1.8083 0.1807 11 8 5.3938 -1.8640 -0.2907 12 6 4.0170 -2.3440 1.5649 13 6 5.3172 -2.8984 2.1506 14 6 5.0521 -3.4428 3.5558 15 1 4.0450 -3.8210 3.7311 16 6 6.2064 -4.1500 4.2687 17 6 5.7636 -2.7582 4.7244 18 17 6.8498 -1.3712 4.3406 19 17 4.8720 -2.6383 6.2870 20 6 3.5127 -0.7704 -1.8134 21 6 2.4423 -0.4556 -2.6436 22 6 2.6961 0.0363 -3.9119 23 6 4.0170 0.1977 -4.3074 24 6 5.0311 -0.1355 -3.4305 25 7 4.7589 -0.5981 -2.2258 26 1 -0.4850 0.8400 -0.0004 27 1 3.6456 -1.5408 2.2014 28 1 3.2734 -3.1393 1.5126 29 1 5.6888 -3.7015 1.5144 30 1 6.0603 -2.1028 2.2031 31 1 5.9588 -4.9932 4.9135 32 1 7.1548 -4.2271 3.7369 33 1 1.4266 -0.5936 -2.3033 34 1 1.8851 0.2890 -4.5787 35 1 4.2495 0.5789 -5.2908 36 1 6.0603 -0.0113 -3.7337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:22 Heat of formation + Delta-G solvation = 30.058591 kcal Electronic energy + Delta-G solvation = -23166.684376 eV Core-core repulsion = 19511.337647 eV Total energy + Delta-G solvation = -3655.346729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.06482 -38.57187 -37.86297 -36.05952 -35.66946 -35.12478 -32.42834 -31.84154 -31.41746 -29.40495 -25.47168 -24.91129 -22.63328 -22.40294 -21.99887 -20.50016 -19.20921 -18.17098 -16.51756 -16.38229 -16.00542 -15.42480 -15.16912 -14.91513 -14.67344 -13.90661 -13.85543 -13.69069 -13.06712 -12.89575 -12.81360 -12.66373 -12.37589 -12.09269 -12.03475 -11.55193 -11.44582 -11.38893 -11.20365 -11.17612 -10.98740 -10.82030 -10.41131 -10.27673 -10.23221 -9.74475 -9.62905 -9.20223 -9.09190 -8.81467 -8.18633 -7.29018 -6.76006 -4.48229 1.14744 1.87950 2.09581 2.15592 3.03472 3.13905 3.15931 3.28147 3.64687 3.90683 4.05649 4.10026 4.31232 4.53556 4.89202 5.00279 5.14856 5.27300 5.35996 5.47619 5.57100 5.67662 5.77681 5.79581 5.90516 6.02393 6.13702 6.25914 6.47076 6.57865 6.60124 6.77345 6.94830 7.16362 7.48791 7.92031 8.06187 8.59793 8.80985 9.11426 9.53878 10.30589 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.003873 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.878927 B = 7228.338830 C = 8006.784789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.097 3.903 3 Si 0.846 3.154 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.375 4.375 8 H 0.111 0.889 9 N -0.405 5.405 10 C 0.494 3.506 11 O -0.521 6.521 12 C -0.116 4.116 13 C -0.089 4.089 14 C -0.106 4.106 15 H 0.132 0.868 16 C -0.144 4.144 17 C -0.003 4.003 18 Cl -0.089 7.089 19 Cl -0.103 7.103 20 C 0.359 3.641 21 C -0.190 4.190 22 C -0.066 4.066 23 C -0.235 4.235 24 C 0.115 3.885 25 N -0.492 5.492 26 H 0.280 0.720 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.740 -4.991 4.890 9.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.115 4.115 3 Si 0.670 3.330 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.500 4.500 8 H 0.129 0.871 9 N -0.119 5.119 10 C 0.284 3.716 11 O -0.396 6.396 12 C -0.156 4.156 13 C -0.127 4.127 14 C -0.125 4.125 15 H 0.149 0.851 16 C -0.182 4.182 17 C -0.054 4.054 18 Cl -0.062 7.062 19 Cl -0.076 7.076 20 C 0.129 3.871 21 C -0.213 4.213 22 C -0.092 4.092 23 C -0.257 4.257 24 C -0.044 4.044 25 N -0.208 5.208 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.170 0.830 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.800 -5.064 5.465 10.787 hybrid contribution -0.618 1.476 -0.354 1.639 sum 7.182 -3.588 5.111 9.517 Atomic orbital electron populations 1.69838 1.06422 1.28964 1.41214 1.25347 0.94777 0.98459 0.92920 0.87169 0.81798 0.84043 0.79980 1.18975 1.20202 1.18257 1.18879 0.89468 0.97776 1.43916 0.87147 1.41559 1.09955 1.51611 1.08781 1.21036 0.83982 0.79439 0.87182 1.90660 1.22134 1.55868 1.70946 1.21374 0.97647 1.02324 0.94285 1.21226 0.98787 1.01854 0.90843 1.23412 0.98755 0.97919 0.92446 0.85063 1.24008 1.00975 0.91668 1.01533 1.26926 0.99301 0.90093 0.89129 1.98749 1.65842 1.48256 1.93324 1.98740 1.76509 1.98284 1.34069 1.19251 0.88660 0.92384 0.86790 1.21896 1.01455 1.04010 0.93969 1.21289 0.96511 0.96045 0.95391 1.21781 0.93993 1.08458 1.01475 1.22446 0.98970 0.94017 0.88929 1.67657 1.20732 1.15870 1.16563 0.90929 0.88559 0.89053 0.89876 0.89645 0.86353 0.86206 0.82998 0.85779 0.86181 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.09 13.96 55.49 0.77 -20.31 16 2 C 0.10 2.42 3.72 -17.49 -0.07 2.36 16 3 Si 0.85 20.32 26.18 -169.99 -4.45 15.87 16 4 H -0.26 -6.44 7.03 56.52 0.40 -6.05 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.26 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.37 -9.15 7.80 -14.90 -0.12 -9.26 16 8 H 0.11 2.73 7.73 -52.48 -0.41 2.32 16 9 N -0.41 -9.81 2.13 -60.71 -0.13 -9.93 16 10 C 0.49 11.20 7.59 -10.99 -0.08 11.11 16 11 O -0.52 -12.77 14.32 5.56 0.08 -12.69 16 12 C -0.12 -2.06 4.45 -27.88 -0.12 -2.19 16 13 C -0.09 -1.32 4.70 -26.73 -0.13 -1.44 16 14 C -0.11 -1.23 5.58 -90.62 -0.51 -1.73 16 15 H 0.13 1.38 8.07 -51.93 -0.42 0.96 16 16 C -0.14 -1.35 9.93 -26.73 -0.27 -1.61 16 17 C 0.00 -0.04 3.62 -26.73 -0.10 -0.13 16 18 Cl -0.09 -1.21 27.27 -51.86 -1.41 -2.63 16 19 Cl -0.10 -1.23 29.29 -51.86 -1.52 -2.75 16 20 C 0.36 8.66 5.57 -154.64 -0.86 7.80 16 21 C -0.19 -4.23 7.61 -39.22 -0.30 -4.53 16 22 C -0.07 -1.24 10.17 -39.31 -0.40 -1.64 16 23 C -0.23 -4.10 10.11 -39.40 -0.40 -4.49 16 24 C 0.12 2.24 11.18 -17.56 -0.20 2.05 16 25 N -0.49 -11.68 8.00 -12.34 -0.10 -11.77 16 26 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 27 H 0.10 1.75 8.10 -51.93 -0.42 1.33 16 28 H 0.09 1.47 7.86 -51.93 -0.41 1.07 16 29 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.09 1.39 6.02 -51.93 -0.31 1.08 16 31 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.12 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.15 3.56 6.17 -52.48 -0.32 3.23 16 34 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.14 2.30 8.06 -52.48 -0.42 1.87 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -29.18 335.22 -9.20 -38.38 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.96 Total: 4.51 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.54 Total: -3.72 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.55 Total: -42.02 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.45 Total: 15.87 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -2.93 Total: -5.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.18 -9.20 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.439 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds