Wall clock time and date at job start Tue Mar 31 2020 14:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48499 * 109.46977 * 273.82046 * 3 2 1 5 5 H 1.48500 * 109.47443 * 33.81871 * 3 2 1 6 6 H 1.48503 * 109.46980 * 153.82288 * 3 2 1 7 7 C 1.38890 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00008 * 333.59321 * 7 2 1 9 9 N 1.37212 * 120.00032 * 153.32033 * 7 2 1 10 10 C 1.34774 * 119.99943 * 128.98913 * 9 7 2 11 11 O 1.21275 * 119.99786 * 180.02562 * 10 9 7 12 12 C 1.50699 * 120.00171 * 359.97438 * 10 9 7 13 13 C 1.53002 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46772 * 180.02562 * 13 12 10 15 15 H 1.08999 * 115.54974 * 29.33324 * 14 13 12 16 16 C 1.52998 * 117.49830 * 174.99630 * 14 13 12 17 17 C 1.52995 * 117.49791 * 243.61887 * 14 13 12 18 18 Cl 1.80300 * 117.49987 * 0.02562 * 17 14 13 19 19 Cl 1.80304 * 117.49935 * 145.02347 * 17 14 13 20 20 C 1.39424 * 119.99977 * 308.98713 * 9 7 2 21 21 C 1.39069 * 119.69793 * 347.45538 * 20 9 7 22 22 C 1.38381 * 119.10326 * 179.97438 * 21 20 9 23 23 C 1.38826 * 118.48836 * 359.97438 * 22 21 20 24 24 C 1.38147 * 119.31304 * 0.02562 * 23 22 21 25 25 N 1.31886 * 120.85365 * 359.74485 * 24 23 22 26 26 H 0.96997 * 119.99808 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47407 * 300.00073 * 12 10 9 28 28 H 1.09000 * 109.47300 * 60.00123 * 12 10 9 29 29 H 1.08998 * 109.46938 * 299.99502 * 13 12 10 30 30 H 1.08996 * 109.47357 * 60.00530 * 13 12 10 31 31 H 1.09002 * 117.50566 * 214.98111 * 16 14 13 32 32 H 1.09008 * 117.49930 * 0.02562 * 16 14 13 33 33 H 1.08005 * 120.45164 * 359.95145 * 21 20 9 34 34 H 1.07993 * 120.75647 * 179.97438 * 22 21 20 35 35 H 1.08003 * 120.34791 * 179.97438 * 23 22 21 36 36 H 1.08006 * 119.57528 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4149 2.0930 -1.3970 5 1 1.4884 2.6281 0.7792 6 1 3.5839 1.4182 0.6177 7 6 2.0086 -1.2028 0.0005 8 1 1.5531 -2.0892 0.4169 9 7 3.2712 -1.2664 -0.5330 10 6 4.2779 -1.8083 0.1807 11 8 5.3938 -1.8640 -0.2907 12 6 4.0170 -2.3440 1.5649 13 6 5.3172 -2.8984 2.1506 14 6 5.0521 -3.4428 3.5558 15 1 4.0450 -3.8210 3.7311 16 6 6.2064 -4.1500 4.2687 17 6 5.7636 -2.7582 4.7244 18 17 6.8498 -1.3712 4.3406 19 17 4.8720 -2.6383 6.2870 20 6 3.5127 -0.7704 -1.8134 21 6 2.4423 -0.4556 -2.6436 22 6 2.6961 0.0363 -3.9119 23 6 4.0170 0.1977 -4.3074 24 6 5.0311 -0.1355 -3.4305 25 7 4.7589 -0.5981 -2.2258 26 1 -0.4850 0.8400 -0.0004 27 1 3.6456 -1.5408 2.2014 28 1 3.2734 -3.1393 1.5126 29 1 5.6888 -3.7015 1.5144 30 1 6.0603 -2.1028 2.2031 31 1 5.9588 -4.9932 4.9135 32 1 7.1548 -4.2271 3.7369 33 1 1.4266 -0.5936 -2.3033 34 1 1.8851 0.2890 -4.5787 35 1 4.2495 0.5789 -5.2908 36 1 6.0603 -0.0113 -3.7337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:21 Heat of formation + Delta-G solvation = 15.565951 kcal Electronic energy + Delta-G solvation = -23167.312824 eV Core-core repulsion = 19511.337647 eV Total energy + Delta-G solvation = -3655.975177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73732 -39.97024 -39.05925 -37.02546 -36.97367 -36.57975 -34.26030 -33.28017 -32.96556 -30.96104 -27.24622 -26.35425 -24.18368 -23.54783 -23.24325 -21.54290 -20.96830 -19.85462 -18.04857 -17.81572 -17.40272 -16.98848 -16.64427 -16.27627 -16.22389 -15.59814 -15.35047 -15.14025 -14.74887 -14.33931 -14.25999 -13.86171 -13.77985 -13.45147 -13.27098 -13.13044 -13.03906 -12.71267 -12.56427 -12.50496 -12.19167 -12.18510 -12.04787 -11.56070 -11.41644 -11.24470 -10.89824 -10.80230 -10.67637 -10.57992 -9.85744 -9.01203 -8.68512 -6.39400 0.22357 0.28903 0.53039 1.10339 1.20033 1.21532 1.32310 1.91362 2.08999 2.25386 2.35214 2.72831 3.16680 3.21675 3.40205 3.69151 3.95027 4.09775 4.11799 4.32974 4.35569 4.41655 4.44164 4.54145 4.62209 4.69915 4.83849 4.94042 5.02227 5.14289 5.21849 5.32941 5.38635 5.48248 5.86005 6.03638 6.27033 6.79482 7.03660 7.36168 7.78548 8.41460 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.003873 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.878927 B = 7228.338830 C = 8006.784789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.085 3.915 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.264 1.264 6 H -0.287 1.287 7 C -0.366 4.366 8 H 0.102 0.898 9 N -0.421 5.421 10 C 0.481 3.519 11 O -0.547 6.547 12 C -0.109 4.109 13 C -0.079 4.079 14 C -0.111 4.111 15 H 0.145 0.855 16 C -0.114 4.114 17 C -0.016 4.016 18 Cl -0.112 7.112 19 Cl -0.104 7.104 20 C 0.327 3.673 21 C -0.211 4.211 22 C -0.064 4.064 23 C -0.211 4.211 24 C 0.101 3.899 25 N -0.529 5.529 26 H 0.286 0.714 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.162 0.838 35 H 0.171 0.829 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -5.316 3.930 9.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.126 4.126 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.189 1.189 6 H -0.212 1.212 7 C -0.492 4.492 8 H 0.120 0.880 9 N -0.136 5.136 10 C 0.272 3.728 11 O -0.425 6.425 12 C -0.148 4.148 13 C -0.117 4.117 14 C -0.130 4.130 15 H 0.163 0.837 16 C -0.151 4.151 17 C -0.067 4.067 18 Cl -0.085 7.085 19 Cl -0.077 7.077 20 C 0.099 3.901 21 C -0.235 4.235 22 C -0.089 4.089 23 C -0.233 4.233 24 C -0.057 4.057 25 N -0.245 5.245 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.165 0.835 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.179 0.821 35 H 0.188 0.812 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.183 -5.376 4.497 10.774 hybrid contribution -0.676 1.578 -0.225 1.731 sum 7.506 -3.799 4.271 9.435 Atomic orbital electron populations 1.69837 1.06718 1.29561 1.42680 1.25490 0.94890 0.99150 0.93073 0.86713 0.79943 0.83518 0.79376 1.19430 1.18916 1.21231 1.18781 0.89664 0.97351 1.43448 0.88019 1.41742 1.09973 1.52355 1.09537 1.21843 0.83487 0.78905 0.88564 1.90615 1.22891 1.57006 1.71938 1.21396 0.99713 1.02329 0.91383 1.21064 0.96565 1.01263 0.92774 1.23319 1.00481 0.98811 0.90425 0.83727 1.24188 1.00168 0.90725 1.00033 1.27142 0.99752 0.90675 0.89173 1.98746 1.66521 1.49745 1.93484 1.98740 1.76590 1.98301 1.34051 1.19475 0.89486 0.93849 0.87300 1.21894 1.00123 1.05798 0.95664 1.21794 0.98533 0.94286 0.94333 1.22286 0.92649 1.05516 1.02822 1.23147 1.01322 0.93215 0.88043 1.67614 1.20895 1.17148 1.18860 0.90353 0.89362 0.87569 0.89716 0.91407 0.83521 0.85293 0.84838 0.82090 0.81197 0.80671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.53 13.96 21.65 0.30 -43.23 16 2 C 0.08 4.26 3.72 84.91 0.32 4.57 16 3 Si 0.88 42.35 26.18 68.60 1.80 44.14 16 4 H -0.27 -12.98 7.03 99.48 0.70 -12.28 16 5 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 7 C -0.37 -18.31 7.80 84.01 0.65 -17.66 16 8 H 0.10 5.16 7.73 -2.91 -0.02 5.14 16 9 N -0.42 -20.90 2.13 -464.38 -0.99 -21.89 16 10 C 0.48 22.43 7.59 87.66 0.67 23.09 16 11 O -0.55 -27.60 14.32 -3.01 -0.04 -27.65 16 12 C -0.11 -3.91 4.45 29.85 0.13 -3.78 16 13 C -0.08 -2.32 4.70 30.60 0.14 -2.17 16 14 C -0.11 -2.42 5.58 -10.79 -0.06 -2.48 16 15 H 0.15 2.78 8.07 -2.39 -0.02 2.76 16 16 C -0.11 -1.84 9.93 30.59 0.30 -1.54 16 17 C -0.02 -0.37 3.62 30.59 0.11 -0.26 16 18 Cl -0.11 -3.06 27.27 -2.72 -0.07 -3.13 16 19 Cl -0.10 -2.35 29.29 -2.72 -0.08 -2.43 16 20 C 0.33 15.97 5.57 132.91 0.74 16.71 16 21 C -0.21 -9.36 7.61 22.50 0.17 -9.19 16 22 C -0.06 -2.21 10.17 22.44 0.23 -1.99 16 23 C -0.21 -6.56 10.11 22.39 0.23 -6.33 16 24 C 0.10 3.71 11.18 84.66 0.95 4.65 16 25 N -0.53 -25.04 8.00 -192.94 -1.54 -26.58 16 26 H 0.29 13.60 8.31 -92.71 -0.77 12.83 16 27 H 0.09 3.31 8.10 -2.39 -0.02 3.29 16 28 H 0.11 3.45 7.86 -2.39 -0.02 3.43 16 29 H 0.08 2.43 8.10 -2.39 -0.02 2.41 16 30 H 0.07 2.25 6.02 -2.39 -0.01 2.24 16 31 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.13 6.34 6.17 -2.91 -0.02 6.32 16 34 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.18 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -65.26 335.22 5.05 -60.21 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.10 Total: 16.94 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.58 Total: 3.63 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -2.23 Total: -91.70 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.04 Total: -27.65 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.80 Total: 44.14 kcal Atomic # 17 Polarization: -5.41 SS G_CDS: -0.15 Total: -5.56 kcal Total: -65.26 5.05 -60.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.774 kcal (2) G-P(sol) polarization free energy of solvation -65.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds