Wall clock time and date at job start Tue Mar 31 2020 14:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48506 * 109.47089 * 239.72848 * 3 2 1 5 5 H 1.48502 * 109.47164 * 359.72553 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72696 * 3 2 1 7 7 C 1.38891 * 119.99880 * 179.72889 * 2 1 3 8 8 H 1.08000 * 120.00027 * 193.25889 * 7 2 1 9 9 N 1.37210 * 120.00447 * 13.25013 * 7 2 1 10 10 C 1.34769 * 120.00643 * 225.75725 * 9 7 2 11 11 O 1.21275 * 120.00308 * 180.02562 * 10 9 7 12 12 C 1.50705 * 119.99792 * 359.97438 * 10 9 7 13 13 C 1.53004 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47104 * 180.02562 * 13 12 10 15 15 H 1.08995 * 115.54856 * 29.32603 * 14 13 12 16 16 C 1.52997 * 117.49763 * 243.61825 * 14 13 12 17 17 C 1.52994 * 60.00230 * 252.50976 * 16 14 13 18 18 Cl 1.80291 * 117.50005 * 252.51270 * 17 16 14 19 19 Cl 1.80298 * 117.49929 * 107.48625 * 17 16 14 20 20 C 1.39434 * 119.99261 * 45.75009 * 9 7 2 21 21 C 1.39064 * 119.69881 * 13.43859 * 20 9 7 22 22 C 1.38379 * 119.09786 * 179.97438 * 21 20 9 23 23 C 1.38832 * 118.49536 * 359.97438 * 22 21 20 24 24 C 1.38146 * 119.30603 * 0.02562 * 23 22 21 25 25 N 1.31879 * 120.85602 * 359.72537 * 24 23 22 26 26 H 0.97003 * 119.99886 * 4.87386 * 1 2 3 27 27 H 1.08996 * 109.47033 * 299.99898 * 12 10 9 28 28 H 1.08998 * 109.46842 * 60.00662 * 12 10 9 29 29 H 1.09002 * 109.46667 * 300.00035 * 13 12 10 30 30 H 1.08993 * 109.47252 * 59.99617 * 13 12 10 31 31 H 1.09002 * 117.49918 * 0.02562 * 16 14 13 32 32 H 1.08999 * 117.49750 * 145.01381 * 16 14 13 33 33 H 1.07992 * 120.44903 * 359.97096 * 21 20 9 34 34 H 1.07996 * 120.75707 * 180.02562 * 22 21 20 35 35 H 1.07990 * 120.34905 * 180.02562 * 23 22 21 36 36 H 1.08007 * 119.57124 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1069 1.6935 -1.2092 5 1 1.2832 2.7465 -0.0067 6 1 3.0969 1.6993 1.2158 7 6 2.0085 -1.2028 0.0057 8 1 3.0669 -1.2143 0.2203 9 7 1.3499 -2.3766 -0.2611 10 6 1.5563 -3.4572 0.5174 11 8 0.9745 -4.4947 0.2812 12 6 2.5109 -3.3765 1.6807 13 6 2.5620 -4.7295 2.3933 14 6 3.5306 -4.6474 3.5748 15 1 3.6282 -3.6644 4.0352 16 6 4.7770 -5.5336 3.5292 17 6 3.6343 -5.8695 4.4896 18 17 3.9092 -5.5731 6.2466 19 17 2.6055 -7.2960 4.0928 20 6 0.4670 -2.4513 -1.3377 21 6 0.4632 -1.4443 -2.2967 22 6 -0.4179 -1.5312 -3.3603 23 6 -1.2677 -2.6269 -3.4285 24 6 -1.2095 -3.5903 -2.4401 25 7 -0.3559 -3.4833 -1.4406 26 1 -0.4850 0.8370 -0.0714 27 1 3.5059 -3.1201 1.3171 28 1 2.1702 -2.6110 2.3778 29 1 1.5670 -4.9864 2.7569 30 1 2.9027 -5.4948 1.6961 31 1 4.9071 -6.1748 2.6574 32 1 5.6950 -5.1335 3.9596 33 1 1.1385 -0.6058 -2.2126 34 1 -0.4433 -0.7645 -4.1205 35 1 -1.9668 -2.7251 -4.2457 36 1 -1.8684 -4.4447 -2.4892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:25 Heat of formation + Delta-G solvation = 24.725010 kcal Electronic energy + Delta-G solvation = -22937.068079 eV Core-core repulsion = 19281.490069 eV Total energy + Delta-G solvation = -3655.578010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77282 -38.46012 -37.70313 -36.06594 -35.67692 -35.05525 -32.11841 -31.73864 -31.02704 -29.15793 -25.38755 -24.91173 -22.53421 -22.30152 -21.78963 -20.48956 -19.23297 -17.96114 -16.46856 -16.24536 -15.66911 -15.23317 -15.05736 -14.79509 -14.63750 -14.04922 -13.68563 -13.42199 -13.21418 -12.78296 -12.63874 -12.38074 -12.13546 -11.84850 -11.78899 -11.65485 -11.37221 -11.31546 -11.17486 -11.04442 -10.85484 -10.80965 -10.78064 -10.54218 -10.08529 -9.76538 -9.47211 -8.96094 -8.90061 -8.72175 -7.95643 -7.10033 -6.46225 -4.48249 1.12928 2.15241 2.22584 2.41407 3.00543 3.08588 3.10121 3.14742 3.77611 3.92402 4.06508 4.26452 4.42311 4.69634 5.03308 5.15854 5.22179 5.39958 5.49427 5.66670 5.68270 5.68992 5.84055 6.01300 6.06381 6.21797 6.31953 6.46107 6.52162 6.63108 6.79433 7.05555 7.18784 7.22128 7.52708 7.90057 8.19370 8.81902 8.90791 9.33188 9.77487 10.43727 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.003538 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.772030 B = 7912.934056 C = 9496.433043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.053 3.947 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.388 5.388 10 C 0.489 3.511 11 O -0.526 6.526 12 C -0.116 4.116 13 C -0.079 4.079 14 C -0.105 4.105 15 H 0.131 0.869 16 C -0.144 4.144 17 C -0.003 4.003 18 Cl -0.106 7.106 19 Cl -0.091 7.091 20 C 0.394 3.606 21 C -0.156 4.156 22 C -0.076 4.076 23 C -0.239 4.239 24 C 0.111 3.889 25 N -0.493 5.493 26 H 0.276 0.724 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 -4.610 4.020 9.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.157 4.157 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.491 4.491 8 H 0.116 0.884 9 N -0.100 5.100 10 C 0.279 3.721 11 O -0.402 6.402 12 C -0.156 4.156 13 C -0.117 4.117 14 C -0.125 4.125 15 H 0.149 0.851 16 C -0.182 4.182 17 C -0.054 4.054 18 Cl -0.079 7.079 19 Cl -0.064 7.064 20 C 0.164 3.836 21 C -0.180 4.180 22 C -0.102 4.102 23 C -0.261 4.261 24 C -0.049 4.049 25 N -0.209 5.209 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.004 -5.767 4.849 10.287 hybrid contribution 0.120 1.724 -0.444 1.784 sum 7.125 -4.043 4.405 9.301 Atomic orbital electron populations 1.69989 1.06245 1.28940 1.41905 1.25521 0.95211 1.00171 0.94795 0.86198 0.79435 0.80885 0.79538 1.19347 1.20614 1.19245 1.19319 0.93624 0.82907 1.53280 0.88380 1.41213 1.36655 1.11055 1.21046 1.20840 0.83758 0.84035 0.83507 1.90666 1.49166 1.29933 1.70468 1.21362 0.99987 0.97427 0.96787 1.21090 0.98767 0.98200 0.93647 1.23435 0.97798 0.94335 0.96883 0.85148 1.24077 0.93458 1.01543 0.99076 1.26886 1.02959 0.93576 0.82020 1.98736 1.96202 1.95533 1.17424 1.98754 1.70607 1.44088 1.92951 1.18686 0.89303 0.89143 0.86468 1.21428 1.01781 1.00710 0.94047 1.21141 0.95019 0.96901 0.97155 1.21633 1.04108 0.97995 1.02357 1.22282 0.95111 0.97419 0.90044 1.67568 1.05578 1.23929 1.23817 0.91394 0.89581 0.88674 0.89869 0.90548 0.86154 0.86409 0.85110 0.86651 0.86857 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.38 11.55 55.49 0.64 -20.74 16 2 C 0.05 1.25 3.52 -17.49 -0.06 1.18 16 3 Si 0.91 17.77 29.57 -169.99 -5.03 12.75 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.36 -8.51 7.73 -14.90 -0.12 -8.62 16 8 H 0.10 2.09 7.33 -52.49 -0.38 1.71 16 9 N -0.39 -9.60 2.71 -60.71 -0.16 -9.77 16 10 C 0.49 11.38 7.59 -10.99 -0.08 11.30 16 11 O -0.53 -13.50 14.33 5.56 0.08 -13.43 16 12 C -0.12 -2.02 4.42 -27.88 -0.12 -2.14 16 13 C -0.08 -1.20 3.87 -26.73 -0.10 -1.30 16 14 C -0.11 -1.23 5.58 -90.62 -0.51 -1.74 16 15 H 0.13 1.40 8.07 -51.93 -0.42 0.98 16 16 C -0.14 -1.39 9.86 -26.74 -0.26 -1.65 16 17 C 0.00 -0.04 3.62 -26.73 -0.10 -0.13 16 18 Cl -0.11 -1.21 29.29 -51.86 -1.52 -2.73 16 19 Cl -0.09 -1.19 28.23 -51.86 -1.46 -2.65 16 20 C 0.39 9.99 6.37 -154.63 -0.99 9.01 16 21 C -0.16 -3.59 7.75 -39.22 -0.30 -3.89 16 22 C -0.08 -1.51 10.17 -39.31 -0.40 -1.91 16 23 C -0.24 -4.53 10.11 -39.40 -0.40 -4.92 16 24 C 0.11 2.34 11.18 -17.56 -0.20 2.15 16 25 N -0.49 -12.48 8.00 -12.34 -0.10 -12.58 16 26 H 0.28 6.68 8.32 -40.82 -0.34 6.35 16 27 H 0.09 1.34 7.76 -51.93 -0.40 0.94 16 28 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 29 H 0.08 1.41 7.98 -51.93 -0.41 1.00 16 30 H 0.08 1.18 7.83 -51.93 -0.41 0.78 16 31 H 0.12 1.11 8.03 -51.93 -0.42 0.69 16 32 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.13 3.03 6.00 -52.49 -0.31 2.71 16 34 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.14 2.46 8.06 -52.48 -0.42 2.03 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -29.48 338.49 -10.09 -39.58 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -4.01 Total: 7.16 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.64 Total: -2.68 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.38 Total: -43.10 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -2.98 Total: -5.38 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.48 -10.09 -39.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.301 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds