Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48506 * 109.47089 * 239.72848 * 3 2 1 5 5 H 1.48502 * 109.47164 * 359.72553 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72696 * 3 2 1 7 7 C 1.38891 * 119.99880 * 179.72889 * 2 1 3 8 8 H 1.08000 * 120.00027 * 193.25889 * 7 2 1 9 9 N 1.37210 * 120.00447 * 13.25013 * 7 2 1 10 10 C 1.34769 * 120.00643 * 225.75725 * 9 7 2 11 11 O 1.21275 * 120.00308 * 180.02562 * 10 9 7 12 12 C 1.50705 * 119.99792 * 359.97438 * 10 9 7 13 13 C 1.53004 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47104 * 180.02562 * 13 12 10 15 15 H 1.08995 * 115.54856 * 29.32603 * 14 13 12 16 16 C 1.52997 * 117.49763 * 243.61825 * 14 13 12 17 17 C 1.52994 * 60.00230 * 252.50976 * 16 14 13 18 18 Cl 1.80291 * 117.50005 * 252.51270 * 17 16 14 19 19 Cl 1.80298 * 117.49929 * 107.48625 * 17 16 14 20 20 C 1.39434 * 119.99261 * 45.75009 * 9 7 2 21 21 C 1.39064 * 119.69881 * 13.43859 * 20 9 7 22 22 C 1.38379 * 119.09786 * 179.97438 * 21 20 9 23 23 C 1.38832 * 118.49536 * 359.97438 * 22 21 20 24 24 C 1.38146 * 119.30603 * 0.02562 * 23 22 21 25 25 N 1.31879 * 120.85602 * 359.72537 * 24 23 22 26 26 H 0.97003 * 119.99886 * 4.87386 * 1 2 3 27 27 H 1.08996 * 109.47033 * 299.99898 * 12 10 9 28 28 H 1.08998 * 109.46842 * 60.00662 * 12 10 9 29 29 H 1.09002 * 109.46667 * 300.00035 * 13 12 10 30 30 H 1.08993 * 109.47252 * 59.99617 * 13 12 10 31 31 H 1.09002 * 117.49918 * 0.02562 * 16 14 13 32 32 H 1.08999 * 117.49750 * 145.01381 * 16 14 13 33 33 H 1.07992 * 120.44903 * 359.97096 * 21 20 9 34 34 H 1.07996 * 120.75707 * 180.02562 * 22 21 20 35 35 H 1.07990 * 120.34905 * 180.02562 * 23 22 21 36 36 H 1.08007 * 119.57124 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1069 1.6935 -1.2092 5 1 1.2832 2.7465 -0.0067 6 1 3.0969 1.6993 1.2158 7 6 2.0085 -1.2028 0.0057 8 1 3.0669 -1.2143 0.2203 9 7 1.3499 -2.3766 -0.2611 10 6 1.5563 -3.4572 0.5174 11 8 0.9745 -4.4947 0.2812 12 6 2.5109 -3.3765 1.6807 13 6 2.5620 -4.7295 2.3933 14 6 3.5306 -4.6474 3.5748 15 1 3.6282 -3.6644 4.0352 16 6 4.7770 -5.5336 3.5292 17 6 3.6343 -5.8695 4.4896 18 17 3.9092 -5.5731 6.2466 19 17 2.6055 -7.2960 4.0928 20 6 0.4670 -2.4513 -1.3377 21 6 0.4632 -1.4443 -2.2967 22 6 -0.4179 -1.5312 -3.3603 23 6 -1.2677 -2.6269 -3.4285 24 6 -1.2095 -3.5903 -2.4401 25 7 -0.3559 -3.4833 -1.4406 26 1 -0.4850 0.8370 -0.0714 27 1 3.5059 -3.1201 1.3171 28 1 2.1702 -2.6110 2.3778 29 1 1.5670 -4.9864 2.7569 30 1 2.9027 -5.4948 1.6961 31 1 4.9071 -6.1748 2.6574 32 1 5.6950 -5.1335 3.9596 33 1 1.1385 -0.6058 -2.2126 34 1 -0.4433 -0.7645 -4.1205 35 1 -1.9668 -2.7251 -4.2457 36 1 -1.8684 -4.4447 -2.4892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = 10.550157 kcal Electronic energy + Delta-G solvation = -22937.682747 eV Core-core repulsion = 19281.490069 eV Total energy + Delta-G solvation = -3656.192678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48039 -39.81636 -39.00267 -37.00275 -36.90621 -36.57528 -33.86331 -33.14971 -32.69350 -30.78313 -27.14338 -26.32644 -24.07348 -23.50599 -23.13519 -21.55308 -20.95399 -19.62118 -17.98874 -17.39399 -17.29334 -16.86214 -16.42109 -16.26485 -16.18794 -15.52727 -15.24408 -14.98486 -14.54172 -14.11049 -14.02576 -13.71709 -13.51810 -13.36288 -13.04823 -12.90902 -12.84012 -12.82439 -12.35454 -12.30157 -12.14346 -12.11017 -12.05625 -11.85450 -11.21488 -11.12663 -10.79566 -10.62839 -10.62311 -10.42979 -9.68972 -8.85852 -8.21436 -6.30218 0.21536 0.55277 0.75698 1.22222 1.47776 1.51342 1.60304 2.07961 2.24090 2.30534 2.71158 2.97319 3.18819 3.42109 3.49449 3.80572 4.04748 4.13225 4.21353 4.33158 4.47058 4.55724 4.56735 4.65348 4.70533 4.75585 4.91392 4.96999 5.14602 5.15746 5.34739 5.40453 5.43245 5.57606 5.90443 6.16582 6.43605 7.04112 7.20747 7.57278 8.03734 8.69061 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.003538 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.772030 B = 7912.934056 C = 9496.433043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.017 3.983 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.373 4.373 8 H 0.115 0.885 9 N -0.404 5.404 10 C 0.470 3.530 11 O -0.563 6.563 12 C -0.102 4.102 13 C -0.066 4.066 14 C -0.111 4.111 15 H 0.145 0.855 16 C -0.118 4.118 17 C -0.011 4.011 18 Cl -0.103 7.103 19 Cl -0.111 7.111 20 C 0.359 3.641 21 C -0.173 4.173 22 C -0.074 4.074 23 C -0.221 4.221 24 C 0.091 3.909 25 N -0.536 5.536 26 H 0.272 0.728 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.146 0.854 33 H 0.123 0.877 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -3.571 3.439 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.189 4.189 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.214 1.214 6 H -0.180 1.180 7 C -0.499 4.499 8 H 0.133 0.867 9 N -0.117 5.117 10 C 0.261 3.739 11 O -0.442 6.442 12 C -0.142 4.142 13 C -0.104 4.104 14 C -0.130 4.130 15 H 0.162 0.838 16 C -0.156 4.156 17 C -0.063 4.063 18 Cl -0.076 7.076 19 Cl -0.084 7.084 20 C 0.129 3.871 21 C -0.197 4.197 22 C -0.100 4.100 23 C -0.243 4.243 24 C -0.067 4.067 25 N -0.252 5.252 26 H 0.082 0.918 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.433 -4.731 4.264 10.568 hybrid contribution -0.416 1.353 -0.354 1.460 sum 8.017 -3.378 3.910 9.538 Atomic orbital electron populations 1.70138 1.08089 1.29418 1.43817 1.26330 0.95613 1.03120 0.93834 0.85164 0.78021 0.76258 0.80145 1.18424 1.21438 1.17978 1.19765 0.94354 0.82873 1.52925 0.86736 1.41583 1.36858 1.11745 1.21472 1.21852 0.84242 0.83370 0.84410 1.90616 1.50879 1.31075 1.71674 1.21334 0.99468 0.98744 0.94658 1.20862 0.98451 0.96515 0.94545 1.23292 0.98536 0.95342 0.95811 0.83783 1.24246 0.93318 0.99690 0.98308 1.27015 1.04049 0.92746 0.82440 1.98737 1.96112 1.95462 1.17239 1.98754 1.71416 1.45123 1.93089 1.19081 0.90222 0.90127 0.87621 1.21497 1.02964 1.00170 0.95052 1.21635 0.93687 0.97931 0.96774 1.22078 1.03551 0.96285 1.02337 1.22893 0.94865 0.99064 0.89927 1.67524 1.06904 1.24846 1.25931 0.91785 0.87287 0.88710 0.92529 0.91298 0.85499 0.83619 0.85915 0.82863 0.82265 0.81961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.73 11.55 21.65 0.25 -45.47 16 2 C 0.02 0.80 3.52 84.91 0.30 1.10 16 3 Si 0.98 35.86 29.57 68.60 2.03 37.89 16 4 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 5 H -0.29 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 7 C -0.37 -17.49 7.73 84.01 0.65 -16.84 16 8 H 0.12 4.80 7.33 -2.91 -0.02 4.77 16 9 N -0.40 -20.56 2.71 -464.37 -1.26 -21.82 16 10 C 0.47 22.63 7.59 87.66 0.67 23.30 16 11 O -0.56 -30.33 14.33 -3.01 -0.04 -30.38 16 12 C -0.10 -3.60 4.42 29.85 0.13 -3.46 16 13 C -0.07 -2.00 3.87 30.60 0.12 -1.88 16 14 C -0.11 -2.44 5.58 -10.79 -0.06 -2.50 16 15 H 0.14 2.80 8.07 -2.39 -0.02 2.78 16 16 C -0.12 -1.99 9.86 30.59 0.30 -1.69 16 17 C -0.01 -0.25 3.62 30.59 0.11 -0.14 16 18 Cl -0.10 -2.19 29.29 -2.72 -0.08 -2.27 16 19 Cl -0.11 -2.89 28.23 -2.72 -0.08 -2.97 16 20 C 0.36 18.65 6.37 132.90 0.85 19.49 16 21 C -0.17 -8.01 7.75 22.50 0.17 -7.83 16 22 C -0.07 -2.82 10.17 22.45 0.23 -2.59 16 23 C -0.22 -7.85 10.11 22.39 0.23 -7.62 16 24 C 0.09 3.80 11.18 84.66 0.95 4.75 16 25 N -0.54 -27.82 8.00 -192.94 -1.54 -29.36 16 26 H 0.27 13.48 8.32 -92.71 -0.77 12.71 16 27 H 0.11 3.28 7.76 -2.39 -0.02 3.26 16 28 H 0.09 3.32 8.10 -2.39 -0.02 3.30 16 29 H 0.06 2.01 7.98 -2.39 -0.02 1.99 16 30 H 0.07 2.17 7.83 -2.39 -0.02 2.16 16 31 H 0.13 2.03 8.03 -2.39 -0.02 2.01 16 32 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.12 5.73 6.00 -2.91 -0.02 5.72 16 34 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.16 4.15 8.06 -2.92 -0.02 4.13 16 36 H 0.16 5.67 8.06 -2.91 -0.02 5.65 16 Total: -1.00 -67.18 338.49 5.02 -62.15 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 1.11 Total: 28.14 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 4.64 Total: 4.08 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -2.55 Total: -96.66 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.04 Total: -30.38 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Atomic # 17 Polarization: -5.08 SS G_CDS: -0.16 Total: -5.24 kcal Total: -67.18 5.02 -62.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.704 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds