Wall clock time and date at job start Tue Mar 31 2020 14:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 115.55344 * 2 1 4 4 C 1.50703 * 109.46832 * 294.51191 * 3 2 1 5 5 O 1.21276 * 120.00017 * 2.65257 * 4 3 2 6 6 N 1.34775 * 120.00356 * 182.65179 * 4 3 2 7 7 C 1.37212 * 119.99986 * 354.49598 * 6 4 3 8 8 H 1.07999 * 119.99575 * 2.57558 * 7 6 4 9 9 C 1.38890 * 120.00296 * 182.57893 * 7 6 4 10 10 N 1.31419 * 119.99939 * 8.28782 * 9 7 6 11 11 Si 1.86802 * 120.00014 * 188.28347 * 9 7 6 12 12 H 1.48495 * 109.47411 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46944 * 120.00599 * 11 9 7 14 14 H 1.48506 * 109.46917 * 240.00027 * 11 9 7 15 15 C 1.39429 * 120.00508 * 174.48816 * 6 4 3 16 16 C 1.39056 * 119.69729 * 84.33419 * 15 6 4 17 17 C 1.38379 * 119.10280 * 179.73220 * 16 15 6 18 18 C 1.38831 * 118.48908 * 0.54076 * 17 16 15 19 19 C 1.38140 * 119.30864 * 359.72074 * 18 17 16 20 20 N 1.31882 * 120.85568 * 0.02562 * 19 18 17 21 21 C 1.53005 * 117.49883 * 145.66527 * 2 1 3 22 22 C 1.53000 * 117.49939 * 214.32517 * 2 1 3 23 23 Cl 1.80308 * 117.49703 * 359.97438 * 22 2 1 24 24 Cl 1.80295 * 117.49958 * 144.99615 * 22 2 1 25 25 H 1.08993 * 109.47237 * 65.28638 * 1 2 3 26 26 H 1.09002 * 109.46823 * 185.29305 * 1 2 3 27 27 H 1.09004 * 109.46869 * 305.28343 * 1 2 3 28 28 H 1.08997 * 109.47518 * 54.50861 * 3 2 1 29 29 H 1.08997 * 109.47924 * 174.51912 * 3 2 1 30 30 H 0.96994 * 119.99849 * 179.97438 * 10 9 7 31 31 H 1.08009 * 120.45051 * 359.97438 * 16 15 6 32 32 H 1.08001 * 120.75857 * 180.25957 * 17 16 15 33 33 H 1.07996 * 120.34293 * 179.71141 * 18 17 16 34 34 H 1.08004 * 119.57496 * 180.02562 * 19 18 17 35 35 H 1.08997 * 117.49893 * 214.99771 * 21 2 1 36 36 H 1.08998 * 117.49679 * 0.02780 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 1.8748 2.0877 -1.2928 5 8 1.1505 1.5616 -2.1110 6 7 2.3977 3.3050 -1.5398 7 6 3.1240 3.9493 -0.5702 8 1 3.3118 3.4636 0.3760 9 6 3.6175 5.2261 -0.8054 10 7 3.2556 5.8818 -1.8853 11 14 4.7956 6.0113 0.4133 12 1 5.0426 5.0733 1.5376 13 1 6.0794 6.3185 -0.2670 14 1 4.2007 7.2666 0.9382 15 6 2.2010 3.9097 -2.7806 16 6 1.0352 4.6292 -3.0193 17 6 0.8552 5.2290 -4.2533 18 6 1.8463 5.0784 -5.2137 19 6 2.9767 4.3448 -4.9096 20 7 3.1231 3.7887 -3.7228 21 6 2.2365 -1.1207 0.7655 22 6 2.2365 -1.1208 -0.7653 23 17 1.2022 -2.3409 -1.5975 24 17 3.7828 -0.7138 -1.5982 25 1 -0.3633 0.4296 -0.9335 26 1 -0.3633 -1.0233 0.0948 27 1 -0.3633 0.5936 0.8389 28 1 1.8084 1.9655 0.8367 29 1 3.2695 1.2670 0.0981 30 1 3.6000 6.7736 -2.0494 31 1 0.2822 4.7220 -2.2506 32 1 -0.0381 5.7976 -4.4660 33 1 1.7346 5.5298 -6.1884 34 1 3.7506 4.2252 -5.6534 35 1 3.1714 -0.8746 1.2689 36 1 1.6112 -1.8582 1.2687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892476986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:19 Heat of formation + Delta-G solvation = 32.673693 kcal Electronic energy + Delta-G solvation = -23994.259677 eV Core-core repulsion = 20339.026348 eV Total energy + Delta-G solvation = -3655.233329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.77761 -38.69241 -37.29299 -35.68343 -35.42621 -34.76427 -31.71551 -31.23958 -30.01703 -28.68190 -27.54003 -25.06137 -22.47651 -22.37486 -22.14200 -19.84933 -18.90284 -17.79128 -16.36715 -15.94833 -15.59743 -15.24581 -14.94461 -14.73339 -14.39803 -13.90417 -13.55741 -13.19724 -12.88317 -12.67823 -12.32771 -12.17712 -12.03028 -11.94177 -11.64841 -11.41894 -11.25281 -11.24291 -11.13662 -11.02440 -10.82309 -10.56310 -10.45678 -10.36665 -10.00375 -9.73388 -9.30935 -8.76457 -8.63684 -8.43598 -7.95978 -7.85503 -6.30597 -4.06086 1.51942 2.34729 2.49063 2.51243 3.05507 3.15110 3.18553 3.39418 3.69668 3.95460 4.31025 4.37244 4.66274 4.97909 5.07874 5.13344 5.22864 5.52773 5.66757 5.72175 5.74966 5.93212 6.00348 6.03948 6.11918 6.16936 6.26410 6.32632 6.53365 6.65739 6.76211 7.16552 7.17263 7.25904 7.44674 7.81316 8.33891 8.94865 9.19474 9.37747 9.72017 10.57307 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.005199 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.262292 B = 5383.999695 C = 6370.001528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.058 4.058 3 C -0.093 4.093 4 C 0.484 3.516 5 O -0.579 6.579 6 N -0.413 5.413 7 C -0.337 4.337 8 H 0.108 0.892 9 C 0.038 3.962 10 N -0.862 5.862 11 Si 0.930 3.070 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.468 3.532 16 C -0.132 4.132 17 C -0.077 4.077 18 C -0.208 4.208 19 C 0.111 3.889 20 N -0.489 5.489 21 C -0.150 4.150 22 C 0.018 3.982 23 Cl -0.105 7.105 24 Cl -0.089 7.089 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.273 0.727 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 -7.223 3.868 8.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.059 4.059 3 C -0.133 4.133 4 C 0.273 3.727 5 O -0.462 6.462 6 N -0.132 5.132 7 C -0.463 4.463 8 H 0.126 0.874 9 C -0.167 4.167 10 N -0.499 5.499 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.207 1.207 15 C 0.242 3.758 16 C -0.154 4.154 17 C -0.103 4.103 18 C -0.229 4.229 19 C -0.047 4.047 20 N -0.202 5.202 21 C -0.188 4.188 22 C -0.034 4.034 23 Cl -0.078 7.078 24 Cl -0.062 7.062 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.326 -7.816 3.435 8.849 hybrid contribution 0.261 1.181 0.196 1.225 sum -2.065 -6.635 3.631 7.841 Atomic orbital electron populations 1.21491 0.90084 1.01952 1.04272 1.22018 0.96634 0.90459 0.96805 1.21117 1.01757 0.92009 0.98425 1.19684 0.83223 0.81107 0.88704 1.90582 1.39979 1.66477 1.49188 1.41173 1.47617 1.15156 1.09249 1.19748 1.31767 0.98778 0.95988 0.87436 1.25215 0.97652 0.96418 0.97420 1.69535 1.41831 1.12804 1.25727 0.85816 0.79909 0.78981 0.79675 1.19203 1.20567 1.20702 1.17336 0.87327 0.86638 0.84503 1.21528 0.98613 0.98406 0.96866 1.21045 0.98118 0.97850 0.93315 1.21638 0.96969 1.04387 0.99899 1.22059 0.95655 0.94101 0.92925 1.67126 1.30258 1.21597 1.01173 1.24209 1.03888 1.01122 0.89572 1.26805 0.87950 0.98219 0.90409 1.98706 1.68738 1.58602 1.81769 1.98755 1.32611 1.93410 1.81391 0.89075 0.92429 0.91694 0.88188 0.88775 0.91516 0.87004 0.86770 0.86859 0.84911 0.86432 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 8.85 37.16 0.33 -1.42 16 2 C -0.06 -0.88 1.63 -154.51 -0.25 -1.13 16 3 C -0.09 -1.65 3.40 -27.89 -0.09 -1.75 16 4 C 0.48 10.93 7.33 -10.98 -0.08 10.85 16 5 O -0.58 -14.18 14.33 5.56 0.08 -14.10 16 6 N -0.41 -10.24 2.74 -60.71 -0.17 -10.41 16 7 C -0.34 -8.21 9.38 -14.90 -0.14 -8.35 16 8 H 0.11 2.38 6.33 -52.49 -0.33 2.04 16 9 C 0.04 0.94 5.41 -17.49 -0.09 0.85 16 10 N -0.86 -22.29 9.84 55.49 0.55 -21.74 16 11 Si 0.93 19.29 29.56 -169.99 -5.02 14.26 16 12 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 15 C 0.47 11.90 2.94 -154.64 -0.45 11.44 16 16 C -0.13 -3.09 9.11 -39.23 -0.36 -3.44 16 17 C -0.08 -1.56 10.17 -39.31 -0.40 -1.96 16 18 C -0.21 -4.04 10.11 -39.40 -0.40 -4.44 16 19 C 0.11 2.39 11.18 -17.57 -0.20 2.19 16 20 N -0.49 -12.45 10.05 -12.34 -0.12 -12.57 16 21 C -0.15 -1.80 9.59 -26.69 -0.26 -2.06 16 22 C 0.02 0.27 3.61 -26.69 -0.10 0.18 16 23 Cl -0.11 -1.60 27.81 -51.86 -1.44 -3.05 16 24 Cl -0.09 -1.57 27.68 -51.86 -1.44 -3.01 16 25 H 0.09 1.60 6.48 -51.93 -0.34 1.26 16 26 H 0.06 0.73 7.26 -51.93 -0.38 0.35 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.10 1.60 7.86 -51.93 -0.41 1.19 16 29 H 0.09 1.66 7.08 -51.93 -0.37 1.29 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.11 2.56 8.06 -52.48 -0.42 2.13 16 32 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 33 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 35 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -29.99 335.98 -8.91 -38.90 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -3.92 Total: 5.69 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.49 Total: 0.96 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.26 Total: -44.73 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.08 Total: -14.10 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 17 Polarization: -3.17 SS G_CDS: -2.88 Total: -6.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.99 -8.91 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.573 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds