Wall clock time and date at job start Tue Mar 31 2020 14:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 115.55344 * 2 1 4 4 C 1.50703 * 109.46832 * 294.51191 * 3 2 1 5 5 O 1.21276 * 120.00017 * 2.65257 * 4 3 2 6 6 N 1.34775 * 120.00356 * 182.65179 * 4 3 2 7 7 C 1.37212 * 119.99986 * 354.49598 * 6 4 3 8 8 H 1.07999 * 119.99575 * 2.57558 * 7 6 4 9 9 C 1.38890 * 120.00296 * 182.57893 * 7 6 4 10 10 N 1.31419 * 119.99939 * 8.28782 * 9 7 6 11 11 Si 1.86802 * 120.00014 * 188.28347 * 9 7 6 12 12 H 1.48495 * 109.47411 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46944 * 120.00599 * 11 9 7 14 14 H 1.48506 * 109.46917 * 240.00027 * 11 9 7 15 15 C 1.39429 * 120.00508 * 174.48816 * 6 4 3 16 16 C 1.39056 * 119.69729 * 84.33419 * 15 6 4 17 17 C 1.38379 * 119.10280 * 179.73220 * 16 15 6 18 18 C 1.38831 * 118.48908 * 0.54076 * 17 16 15 19 19 C 1.38140 * 119.30864 * 359.72074 * 18 17 16 20 20 N 1.31882 * 120.85568 * 0.02562 * 19 18 17 21 21 C 1.53005 * 117.49883 * 145.66527 * 2 1 3 22 22 C 1.53000 * 117.49939 * 214.32517 * 2 1 3 23 23 Cl 1.80308 * 117.49703 * 359.97438 * 22 2 1 24 24 Cl 1.80295 * 117.49958 * 144.99615 * 22 2 1 25 25 H 1.08993 * 109.47237 * 65.28638 * 1 2 3 26 26 H 1.09002 * 109.46823 * 185.29305 * 1 2 3 27 27 H 1.09004 * 109.46869 * 305.28343 * 1 2 3 28 28 H 1.08997 * 109.47518 * 54.50861 * 3 2 1 29 29 H 1.08997 * 109.47924 * 174.51912 * 3 2 1 30 30 H 0.96994 * 119.99849 * 179.97438 * 10 9 7 31 31 H 1.08009 * 120.45051 * 359.97438 * 16 15 6 32 32 H 1.08001 * 120.75857 * 180.25957 * 17 16 15 33 33 H 1.07996 * 120.34293 * 179.71141 * 18 17 16 34 34 H 1.08004 * 119.57496 * 180.02562 * 19 18 17 35 35 H 1.08997 * 117.49893 * 214.99771 * 21 2 1 36 36 H 1.08998 * 117.49679 * 0.02780 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 1.8748 2.0877 -1.2928 5 8 1.1505 1.5616 -2.1110 6 7 2.3977 3.3050 -1.5398 7 6 3.1240 3.9493 -0.5702 8 1 3.3118 3.4636 0.3760 9 6 3.6175 5.2261 -0.8054 10 7 3.2556 5.8818 -1.8853 11 14 4.7956 6.0113 0.4133 12 1 5.0426 5.0733 1.5376 13 1 6.0794 6.3185 -0.2670 14 1 4.2007 7.2666 0.9382 15 6 2.2010 3.9097 -2.7806 16 6 1.0352 4.6292 -3.0193 17 6 0.8552 5.2290 -4.2533 18 6 1.8463 5.0784 -5.2137 19 6 2.9767 4.3448 -4.9096 20 7 3.1231 3.7887 -3.7228 21 6 2.2365 -1.1207 0.7655 22 6 2.2365 -1.1208 -0.7653 23 17 1.2022 -2.3409 -1.5975 24 17 3.7828 -0.7138 -1.5982 25 1 -0.3633 0.4296 -0.9335 26 1 -0.3633 -1.0233 0.0948 27 1 -0.3633 0.5936 0.8389 28 1 1.8084 1.9655 0.8367 29 1 3.2695 1.2670 0.0981 30 1 3.6000 6.7736 -2.0494 31 1 0.2822 4.7220 -2.2506 32 1 -0.0381 5.7976 -4.4660 33 1 1.7346 5.5298 -6.1884 34 1 3.7506 4.2252 -5.6534 35 1 3.1714 -0.8746 1.2689 36 1 1.6112 -1.8582 1.2687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892476986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:18 Heat of formation + Delta-G solvation = 16.706721 kcal Electronic energy + Delta-G solvation = -23994.952057 eV Core-core repulsion = 20339.026348 eV Total energy + Delta-G solvation = -3655.925709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43967 -40.12808 -38.78149 -36.90804 -36.78169 -36.42328 -33.53537 -32.93569 -31.58723 -30.03228 -28.85759 -26.88691 -24.12331 -24.05610 -23.21968 -21.43133 -20.46105 -19.32435 -18.02496 -17.27511 -17.18469 -16.93343 -16.48871 -16.23822 -16.04921 -15.40935 -15.09141 -14.74676 -14.26986 -14.04546 -13.91837 -13.73876 -13.41265 -13.13968 -13.07767 -12.95903 -12.87628 -12.68035 -12.47144 -12.42260 -12.24733 -12.06698 -12.03867 -11.64271 -11.53193 -11.23779 -10.54585 -10.43882 -10.33069 -10.21048 -9.70372 -9.59522 -8.10533 -5.92456 0.34013 0.67105 0.82450 1.30378 1.40959 1.46708 1.58102 1.98198 2.19033 2.33414 2.79834 3.17316 3.21127 3.33189 3.49700 3.86699 4.05012 4.07493 4.22253 4.39144 4.54058 4.63482 4.64417 4.70676 4.76508 4.83864 4.90241 4.97334 5.04935 5.10005 5.41888 5.45604 5.50704 5.53039 5.75334 6.10084 6.54345 7.12414 7.45880 7.64256 7.95963 8.74839 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.005199 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.262292 B = 5383.999695 C = 6370.001528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.086 4.086 4 C 0.477 3.523 5 O -0.605 6.605 6 N -0.431 5.431 7 C -0.349 4.349 8 H 0.125 0.875 9 C -0.010 4.010 10 N -0.887 5.887 11 Si 0.993 3.007 12 H -0.248 1.248 13 H -0.292 1.292 14 H -0.281 1.281 15 C 0.443 3.557 16 C -0.159 4.159 17 C -0.074 4.074 18 C -0.198 4.198 19 C 0.092 3.908 20 N -0.531 5.531 21 C -0.106 4.106 22 C -0.005 4.005 23 Cl -0.107 7.107 24 Cl -0.117 7.117 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.266 0.734 31 H 0.102 0.898 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.905 -7.556 5.123 9.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.125 4.125 4 C 0.268 3.732 5 O -0.490 6.490 6 N -0.150 5.150 7 C -0.475 4.475 8 H 0.143 0.857 9 C -0.212 4.212 10 N -0.525 5.525 11 Si 0.817 3.183 12 H -0.171 1.171 13 H -0.219 1.219 14 H -0.206 1.206 15 C 0.217 3.783 16 C -0.182 4.182 17 C -0.100 4.100 18 C -0.218 4.218 19 C -0.065 4.065 20 N -0.244 5.244 21 C -0.143 4.143 22 C -0.057 4.057 23 Cl -0.080 7.080 24 Cl -0.090 7.090 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.155 0.845 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.424 -8.170 4.706 9.734 hybrid contribution 0.211 1.266 -0.304 1.319 sum -2.212 -6.903 4.401 8.481 Atomic orbital electron populations 1.21417 0.89649 1.03086 1.03031 1.22043 0.97021 0.89713 0.98802 1.21092 1.02067 0.93235 0.96145 1.20556 0.82116 0.80549 0.90003 1.90552 1.40936 1.66936 1.50572 1.41505 1.48077 1.15995 1.09441 1.20206 1.31566 0.99048 0.96678 0.85715 1.26072 0.99025 0.96983 0.99085 1.69729 1.42795 1.12578 1.27365 0.84854 0.77062 0.78295 0.78090 1.17108 1.21894 1.20641 1.17634 0.88049 0.87625 0.84991 1.21637 0.98386 0.99844 0.98306 1.21517 0.99532 0.96826 0.92150 1.22073 0.95440 1.02843 1.01438 1.22674 0.97320 0.94017 0.92504 1.67094 1.31271 1.23344 1.02657 1.24410 1.04260 0.98757 0.86869 1.27160 0.87169 0.99042 0.92286 1.98701 1.68701 1.58444 1.82191 1.98748 1.34365 1.93693 1.82229 0.92792 0.90615 0.89892 0.86503 0.88707 0.92330 0.87992 0.83122 0.82371 0.82353 0.84494 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 8.85 71.98 0.64 -2.52 16 2 C -0.07 -2.14 1.63 -52.18 -0.09 -2.22 16 3 C -0.09 -2.96 3.40 29.85 0.10 -2.86 16 4 C 0.48 21.94 7.33 87.66 0.64 22.58 16 5 O -0.61 -30.57 14.33 -3.02 -0.04 -30.61 16 6 N -0.43 -21.86 2.74 -464.38 -1.27 -23.13 16 7 C -0.35 -17.16 9.38 84.01 0.79 -16.37 16 8 H 0.13 5.43 6.33 -2.91 -0.02 5.42 16 9 C -0.01 -0.50 5.41 84.91 0.46 -0.04 16 10 N -0.89 -46.74 9.84 21.65 0.21 -46.52 16 11 Si 0.99 39.53 29.56 68.60 2.03 41.56 16 12 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 13 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 14 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 15 C 0.44 23.07 2.94 132.90 0.39 23.46 16 16 C -0.16 -7.63 9.11 22.50 0.20 -7.43 16 17 C -0.07 -2.93 10.17 22.45 0.23 -2.70 16 18 C -0.20 -7.34 10.11 22.39 0.23 -7.12 16 19 C 0.09 3.96 11.18 84.66 0.95 4.91 16 20 N -0.53 -27.58 10.05 -192.96 -1.94 -29.52 16 21 C -0.11 -2.18 9.59 30.62 0.29 -1.88 16 22 C -0.01 -0.16 3.61 30.62 0.11 -0.05 16 23 Cl -0.11 -3.17 27.81 -2.72 -0.08 -3.24 16 24 Cl -0.12 -4.13 27.68 -2.72 -0.08 -4.20 16 25 H 0.05 1.90 6.48 -2.39 -0.02 1.89 16 26 H 0.07 1.76 7.26 -2.39 -0.02 1.74 16 27 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.12 3.57 7.86 -2.39 -0.02 3.55 16 29 H 0.09 3.25 7.08 -2.39 -0.02 3.23 16 30 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 32 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 33 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 34 H 0.16 5.67 8.06 -2.91 -0.02 5.65 16 35 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -68.17 335.98 4.89 -63.28 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 1.11 Total: 24.63 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.94 Total: 7.75 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.00 Total: -99.17 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.04 Total: -30.61 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Atomic # 17 Polarization: -7.29 SS G_CDS: -0.15 Total: -7.44 kcal Total: -68.17 4.89 -63.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.990 kcal (2) G-P(sol) polarization free energy of solvation -68.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds