Wall clock time and date at job start Tue Mar 31 2020 14:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 115.54801 * 2 1 4 4 C 1.50692 * 109.47009 * 294.91755 * 3 2 1 5 5 O 1.21276 * 120.00337 * 356.22761 * 4 3 2 6 6 N 1.34774 * 120.00066 * 176.22626 * 4 3 2 7 7 C 1.37217 * 120.00007 * 4.17289 * 6 4 3 8 8 H 1.07993 * 119.99824 * 45.97444 * 7 6 4 9 9 C 1.38892 * 120.00215 * 225.98173 * 7 6 4 10 10 N 1.31422 * 120.00061 * 18.29938 * 9 7 6 11 11 Si 1.86798 * 120.00194 * 198.30327 * 9 7 6 12 12 H 1.48499 * 109.47129 * 89.99395 * 11 9 7 13 13 H 1.48495 * 109.47093 * 209.99849 * 11 9 7 14 14 H 1.48499 * 109.46876 * 329.99637 * 11 9 7 15 15 C 1.39423 * 120.00362 * 184.17403 * 6 4 3 16 16 C 1.39063 * 119.69915 * 184.99947 * 15 6 4 17 17 C 1.38387 * 119.10164 * 179.97438 * 16 15 6 18 18 C 1.38831 * 118.48573 * 359.97438 * 17 16 15 19 19 C 1.38141 * 119.31451 * 0.02562 * 18 17 16 20 20 N 1.31872 * 120.85260 * 0.27348 * 19 18 17 21 21 C 1.52997 * 117.50270 * 214.33403 * 2 1 3 22 22 C 1.53001 * 117.50441 * 145.67057 * 2 1 3 23 23 Cl 1.80293 * 117.50228 * 215.00776 * 22 2 1 24 24 Cl 1.80304 * 117.49628 * 0.02562 * 22 2 1 25 25 H 1.09000 * 109.46832 * 68.00040 * 1 2 3 26 26 H 1.09005 * 109.46361 * 187.99519 * 1 2 3 27 27 H 1.08992 * 109.47350 * 307.99463 * 1 2 3 28 28 H 1.09003 * 109.46709 * 174.91657 * 3 2 1 29 29 H 1.08999 * 109.46930 * 54.91712 * 3 2 1 30 30 H 0.96992 * 119.99728 * 174.95057 * 10 9 7 31 31 H 1.08000 * 120.45246 * 359.97438 * 16 15 6 32 32 H 1.07997 * 120.75595 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.33606 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.57198 * 180.02562 * 19 18 17 35 35 H 1.09007 * 117.49665 * 359.96971 * 21 2 1 36 36 H 1.09000 * 117.50365 * 144.99745 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3805 0.0000 4 6 1.8664 2.0918 -1.2885 5 8 1.2339 1.5231 -2.1529 6 7 2.2801 3.3601 -1.4803 7 6 3.0680 3.9744 -0.5397 8 1 3.9135 3.4511 -0.1185 9 6 2.7780 5.2692 -0.1293 10 7 1.5850 5.7758 -0.3466 11 14 4.0838 6.2908 0.7314 12 1 4.8631 7.0508 -0.2787 13 1 3.4315 7.2391 1.6696 14 1 4.9948 5.3943 1.4874 15 6 1.9074 4.0480 -2.6343 16 6 2.4215 5.3172 -2.8762 17 6 2.0437 5.9887 -4.0257 18 6 1.1616 5.3646 -4.8974 19 6 0.6902 4.1021 -4.5937 20 7 1.0634 3.4889 -3.4875 21 6 2.2365 -1.1206 -0.7654 22 6 2.2366 -1.1207 0.7653 23 17 3.7829 -0.7136 1.5983 24 17 1.2024 -2.3408 1.5977 25 1 -0.3633 0.3850 -0.9529 26 1 -0.3632 -1.0178 0.1430 27 1 -0.3633 0.6326 0.8098 28 1 3.2701 1.2668 0.0911 29 1 1.8137 1.9630 0.8410 30 1 1.3587 6.6514 0.0040 31 1 3.1064 5.7729 -2.1764 32 1 2.4264 6.9756 -4.2399 33 1 0.8465 5.8615 -5.8031 34 1 0.0041 3.6126 -5.2691 35 1 1.6113 -1.8582 -1.2686 36 1 3.1714 -0.8745 -1.2689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892476987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:22 Heat of formation + Delta-G solvation = 36.157786 kcal Electronic energy + Delta-G solvation = -23720.038754 eV Core-core repulsion = 20064.956506 eV Total energy + Delta-G solvation = -3655.082248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92145 -38.75746 -37.38692 -35.91038 -35.61446 -34.98311 -32.19216 -31.08958 -29.95058 -28.67110 -27.51824 -25.33805 -22.75372 -22.23276 -21.98665 -19.85979 -18.88645 -17.82546 -16.40273 -15.96963 -15.67133 -15.12182 -15.04932 -14.68908 -14.25857 -14.19248 -13.49407 -13.33845 -13.14300 -12.75969 -12.54307 -12.38159 -12.09161 -11.95618 -11.76351 -11.55271 -11.40570 -11.33313 -11.18194 -11.06531 -11.02557 -10.77439 -10.54848 -10.43775 -9.83613 -9.57994 -9.46565 -8.97886 -8.91211 -8.74815 -7.94789 -7.05722 -6.54756 -4.49738 1.27461 2.19177 2.33241 2.39092 2.97350 3.07737 3.09657 3.33811 3.73845 3.89915 4.20641 4.47055 4.55674 4.67099 5.13330 5.16600 5.27535 5.48550 5.67605 5.71766 5.84497 5.92342 6.01915 6.09379 6.14693 6.23839 6.30471 6.38181 6.47676 6.62480 6.78688 7.04168 7.17672 7.22459 7.50030 7.87405 8.15769 8.78039 8.85311 9.29599 9.73072 10.37489 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.004622 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.170494 B = 6057.145616 C = 7502.135775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.053 4.053 3 C -0.093 4.093 4 C 0.496 3.504 5 O -0.517 6.517 6 N -0.383 5.383 7 C -0.370 4.370 8 H 0.100 0.900 9 C 0.057 3.943 10 N -0.836 5.836 11 Si 0.913 3.087 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.387 3.613 16 C -0.155 4.155 17 C -0.077 4.077 18 C -0.238 4.238 19 C 0.109 3.891 20 N -0.493 5.493 21 C -0.127 4.127 22 C -0.001 4.001 23 Cl -0.100 7.100 24 Cl -0.106 7.106 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.277 0.723 31 H 0.135 0.865 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.572 -6.545 0.719 6.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C -0.133 4.133 4 C 0.285 3.715 5 O -0.393 6.393 6 N -0.095 5.095 7 C -0.497 4.497 8 H 0.117 0.883 9 C -0.154 4.154 10 N -0.467 5.467 11 Si 0.737 3.263 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.188 1.188 15 C 0.156 3.844 16 C -0.179 4.179 17 C -0.103 4.103 18 C -0.261 4.261 19 C -0.050 4.050 20 N -0.209 5.209 21 C -0.164 4.164 22 C -0.052 4.052 23 Cl -0.073 7.073 24 Cl -0.079 7.079 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.136 0.864 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.874 -7.627 0.714 7.710 hybrid contribution 0.985 1.617 0.664 2.006 sum 1.859 -6.011 1.378 6.441 Atomic orbital electron populations 1.21511 0.89976 1.02211 1.04302 1.22061 0.96667 0.90651 0.96086 1.21118 1.01715 0.91658 0.98776 1.20522 0.79980 0.82879 0.88157 1.90647 1.38314 1.65977 1.44374 1.41152 1.43402 1.10754 1.14168 1.19384 1.10633 0.99155 1.20522 0.88263 1.25516 0.96121 0.98177 0.95602 1.70001 1.18017 1.18372 1.40354 0.86154 0.80793 0.79898 0.79407 1.19606 1.20473 1.18770 1.18732 0.90250 0.89553 0.85849 1.21571 1.03397 0.95364 0.97563 1.21167 0.96618 0.98767 0.93792 1.21641 1.04342 0.98197 1.01895 1.22274 0.97264 0.91819 0.93678 1.67592 1.13377 1.36202 1.03686 1.23979 1.03804 1.00815 0.87825 1.27375 0.87395 0.98728 0.91720 1.98731 1.33762 1.93419 1.81402 1.98711 1.68623 1.59004 1.81538 0.89102 0.92073 0.91764 0.88752 0.87638 0.91269 0.84705 0.86673 0.86876 0.84457 0.86440 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.11 37.16 0.34 -1.57 16 2 C -0.05 -0.83 1.60 -154.50 -0.25 -1.08 16 3 C -0.09 -1.70 4.00 -27.88 -0.11 -1.81 16 4 C 0.50 11.20 7.43 -10.99 -0.08 11.12 16 5 O -0.52 -12.39 12.83 5.56 0.07 -12.32 16 6 N -0.38 -9.34 2.69 -60.71 -0.16 -9.50 16 7 C -0.37 -8.68 7.80 -14.90 -0.12 -8.79 16 8 H 0.10 2.19 7.50 -52.49 -0.39 1.80 16 9 C 0.06 1.31 3.14 -17.48 -0.05 1.26 16 10 N -0.84 -20.87 11.59 55.49 0.64 -20.23 16 11 Si 0.91 17.86 29.44 -169.99 -5.00 12.85 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 14 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 15 C 0.39 9.60 6.68 -154.64 -1.03 8.56 16 16 C -0.15 -3.56 7.73 -39.22 -0.30 -3.86 16 17 C -0.08 -1.53 10.17 -39.31 -0.40 -1.93 16 18 C -0.24 -4.43 10.11 -39.40 -0.40 -4.83 16 19 C 0.11 2.23 11.18 -17.57 -0.20 2.03 16 20 N -0.49 -11.99 7.92 -12.34 -0.10 -12.09 16 21 C -0.13 -1.77 9.59 -26.70 -0.26 -2.03 16 22 C 0.00 -0.01 3.61 -26.69 -0.10 -0.11 16 23 Cl -0.10 -1.41 27.56 -51.86 -1.43 -2.84 16 24 Cl -0.11 -1.38 27.50 -51.86 -1.43 -2.81 16 25 H 0.09 1.61 6.73 -51.93 -0.35 1.26 16 26 H 0.06 0.83 6.68 -51.93 -0.35 0.48 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 1.65 6.53 -51.93 -0.34 1.31 16 29 H 0.11 1.99 8.06 -51.93 -0.42 1.58 16 30 H 0.28 6.54 8.32 -40.82 -0.34 6.20 16 31 H 0.14 3.16 5.25 -52.49 -0.28 2.88 16 32 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 35 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.12 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -27.40 330.65 -9.17 -36.58 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -3.79 Total: 8.43 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.96 Total: -3.04 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.38 Total: -41.82 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.07 Total: -12.32 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.00 Total: 12.85 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -2.86 Total: -5.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.40 -9.17 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.733 kcal (2) G-P(sol) polarization free energy of solvation -27.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds