Wall clock time and date at job start Tue Mar 31 2020 14:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 115.54801 * 2 1 4 4 C 1.50692 * 109.47009 * 294.91755 * 3 2 1 5 5 O 1.21276 * 120.00337 * 356.22761 * 4 3 2 6 6 N 1.34774 * 120.00066 * 176.22626 * 4 3 2 7 7 C 1.37217 * 120.00007 * 4.17289 * 6 4 3 8 8 H 1.07993 * 119.99824 * 45.97444 * 7 6 4 9 9 C 1.38892 * 120.00215 * 225.98173 * 7 6 4 10 10 N 1.31422 * 120.00061 * 18.29938 * 9 7 6 11 11 Si 1.86798 * 120.00194 * 198.30327 * 9 7 6 12 12 H 1.48499 * 109.47129 * 89.99395 * 11 9 7 13 13 H 1.48495 * 109.47093 * 209.99849 * 11 9 7 14 14 H 1.48499 * 109.46876 * 329.99637 * 11 9 7 15 15 C 1.39423 * 120.00362 * 184.17403 * 6 4 3 16 16 C 1.39063 * 119.69915 * 184.99947 * 15 6 4 17 17 C 1.38387 * 119.10164 * 179.97438 * 16 15 6 18 18 C 1.38831 * 118.48573 * 359.97438 * 17 16 15 19 19 C 1.38141 * 119.31451 * 0.02562 * 18 17 16 20 20 N 1.31872 * 120.85260 * 0.27348 * 19 18 17 21 21 C 1.52997 * 117.50270 * 214.33403 * 2 1 3 22 22 C 1.53001 * 117.50441 * 145.67057 * 2 1 3 23 23 Cl 1.80293 * 117.50228 * 215.00776 * 22 2 1 24 24 Cl 1.80304 * 117.49628 * 0.02562 * 22 2 1 25 25 H 1.09000 * 109.46832 * 68.00040 * 1 2 3 26 26 H 1.09005 * 109.46361 * 187.99519 * 1 2 3 27 27 H 1.08992 * 109.47350 * 307.99463 * 1 2 3 28 28 H 1.09003 * 109.46709 * 174.91657 * 3 2 1 29 29 H 1.08999 * 109.46930 * 54.91712 * 3 2 1 30 30 H 0.96992 * 119.99728 * 174.95057 * 10 9 7 31 31 H 1.08000 * 120.45246 * 359.97438 * 16 15 6 32 32 H 1.07997 * 120.75595 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.33606 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.57198 * 180.02562 * 19 18 17 35 35 H 1.09007 * 117.49665 * 359.96971 * 21 2 1 36 36 H 1.09000 * 117.50365 * 144.99745 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3805 0.0000 4 6 1.8664 2.0918 -1.2885 5 8 1.2339 1.5231 -2.1529 6 7 2.2801 3.3601 -1.4803 7 6 3.0680 3.9744 -0.5397 8 1 3.9135 3.4511 -0.1185 9 6 2.7780 5.2692 -0.1293 10 7 1.5850 5.7758 -0.3466 11 14 4.0838 6.2908 0.7314 12 1 4.8631 7.0508 -0.2787 13 1 3.4315 7.2391 1.6696 14 1 4.9948 5.3943 1.4874 15 6 1.9074 4.0480 -2.6343 16 6 2.4215 5.3172 -2.8762 17 6 2.0437 5.9887 -4.0257 18 6 1.1616 5.3646 -4.8974 19 6 0.6902 4.1021 -4.5937 20 7 1.0634 3.4889 -3.4875 21 6 2.2365 -1.1206 -0.7654 22 6 2.2366 -1.1207 0.7653 23 17 3.7829 -0.7136 1.5983 24 17 1.2024 -2.3408 1.5977 25 1 -0.3633 0.3850 -0.9529 26 1 -0.3632 -1.0178 0.1430 27 1 -0.3633 0.6326 0.8098 28 1 3.2701 1.2668 0.0911 29 1 1.8137 1.9630 0.8410 30 1 1.3587 6.6514 0.0040 31 1 3.1064 5.7729 -2.1764 32 1 2.4264 6.9756 -4.2399 33 1 0.8465 5.8615 -5.8031 34 1 0.0041 3.6126 -5.2691 35 1 1.6113 -1.8582 -1.2686 36 1 3.1714 -0.8745 -1.2689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892476987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:22 Heat of formation + Delta-G solvation = 24.051554 kcal Electronic energy + Delta-G solvation = -23720.563720 eV Core-core repulsion = 20064.956506 eV Total energy + Delta-G solvation = -3655.607213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56978 -40.19059 -38.85673 -37.03761 -36.98031 -36.53052 -33.93584 -32.76224 -31.51580 -30.06227 -28.92564 -27.11619 -24.36373 -23.71354 -23.30064 -21.42444 -20.44432 -19.36222 -18.01933 -17.40173 -17.21032 -16.73660 -16.53679 -16.19143 -15.88558 -15.70197 -15.09539 -14.78915 -14.58745 -14.13088 -13.98971 -13.78247 -13.61343 -13.44512 -13.12468 -13.10322 -12.97408 -12.63567 -12.48900 -12.48748 -12.32001 -12.18494 -12.05990 -11.65725 -11.19630 -11.04367 -10.85484 -10.64773 -10.54307 -10.41861 -9.63684 -8.79084 -8.28653 -6.31112 0.12791 0.55671 0.76227 1.18883 1.41358 1.47226 1.57092 2.01575 2.14769 2.27323 2.73038 2.90716 3.19109 3.35750 3.47745 3.80825 3.91311 4.00369 4.22389 4.36621 4.57101 4.61087 4.64054 4.66440 4.76385 4.79345 4.82921 4.92093 5.00177 5.16989 5.31064 5.39330 5.43879 5.60179 5.89870 6.14440 6.42000 7.01002 7.17653 7.57440 8.01252 8.63109 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.004622 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.170494 B = 6057.145616 C = 7502.135775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 C -0.078 4.078 4 C 0.483 3.517 5 O -0.538 6.538 6 N -0.400 5.400 7 C -0.381 4.381 8 H 0.106 0.894 9 C 0.026 3.974 10 N -0.873 5.873 11 Si 0.974 3.026 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.254 1.254 15 C 0.353 3.647 16 C -0.176 4.176 17 C -0.077 4.077 18 C -0.221 4.221 19 C 0.093 3.907 20 N -0.528 5.528 21 C -0.119 4.119 22 C 0.012 3.988 23 Cl -0.099 7.099 24 Cl -0.091 7.091 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.276 0.724 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.134 0.866 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -6.447 0.269 6.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.118 4.118 4 C 0.273 3.727 5 O -0.416 6.416 6 N -0.112 5.112 7 C -0.507 4.507 8 H 0.123 0.877 9 C -0.181 4.181 10 N -0.505 5.505 11 Si 0.796 3.204 12 H -0.191 1.191 13 H -0.207 1.207 14 H -0.178 1.178 15 C 0.124 3.876 16 C -0.200 4.200 17 C -0.103 4.103 18 C -0.243 4.243 19 C -0.065 4.065 20 N -0.245 5.245 21 C -0.157 4.157 22 C -0.040 4.040 23 Cl -0.072 7.072 24 Cl -0.064 7.064 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.167 0.833 33 H 0.177 0.823 34 H 0.184 0.816 35 H 0.152 0.848 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.423 -7.538 0.260 7.675 hybrid contribution 0.753 1.589 0.692 1.890 sum 2.176 -5.949 0.952 6.405 Atomic orbital electron populations 1.21396 0.89978 1.03127 1.02653 1.21948 0.96721 0.89971 0.98736 1.20957 1.02191 0.92613 0.96038 1.21200 0.79556 0.82694 0.89231 1.90605 1.39222 1.66354 1.45419 1.41452 1.43848 1.11377 1.14562 1.19667 1.10755 0.99693 1.20600 0.87665 1.26205 0.97435 0.98643 0.95857 1.70117 1.19940 1.18636 1.41829 0.85231 0.78456 0.78341 0.78372 1.19124 1.20696 1.17804 1.19075 0.91402 0.90588 0.86558 1.21614 1.04154 0.95331 0.98930 1.21626 0.96122 0.99917 0.92619 1.22078 1.02323 0.97173 1.02689 1.22916 0.97577 0.92951 0.93086 1.67562 1.14142 1.37696 1.05063 1.24064 1.03723 0.99923 0.87949 1.27181 0.87078 0.97720 0.91977 1.98735 1.33631 1.93471 1.81363 1.98717 1.68242 1.58183 1.81291 0.91752 0.90063 0.92116 0.88120 0.88755 0.91434 0.85895 0.83281 0.82342 0.81599 0.84815 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.58 9.11 71.98 0.66 -2.92 16 2 C -0.07 -2.26 1.60 -52.18 -0.08 -2.35 16 3 C -0.08 -2.93 4.00 29.85 0.12 -2.81 16 4 C 0.48 22.56 7.43 87.65 0.65 23.21 16 5 O -0.54 -26.66 12.83 -3.02 -0.04 -26.70 16 6 N -0.40 -20.12 2.69 -464.39 -1.25 -21.37 16 7 C -0.38 -18.25 7.80 84.01 0.66 -17.59 16 8 H 0.11 4.73 7.50 -2.91 -0.02 4.71 16 9 C 0.03 1.21 3.14 84.91 0.27 1.48 16 10 N -0.87 -44.52 11.59 21.65 0.25 -44.27 16 11 Si 0.97 36.59 29.44 68.60 2.02 38.61 16 12 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 13 H -0.28 -10.59 7.11 99.48 0.71 -9.89 16 14 H -0.25 -9.09 7.11 99.48 0.71 -8.39 16 15 C 0.35 17.93 6.68 132.90 0.89 18.81 16 16 C -0.18 -8.15 7.73 22.50 0.17 -7.97 16 17 C -0.08 -2.90 10.17 22.45 0.23 -2.67 16 18 C -0.22 -7.60 10.11 22.39 0.23 -7.37 16 19 C 0.09 3.70 11.18 84.66 0.95 4.65 16 20 N -0.53 -26.06 7.92 -192.96 -1.53 -27.59 16 21 C -0.12 -3.22 9.59 30.62 0.29 -2.93 16 22 C 0.01 0.32 3.61 30.62 0.11 0.43 16 23 Cl -0.10 -2.68 27.56 -2.72 -0.07 -2.76 16 24 Cl -0.09 -2.23 27.50 -2.72 -0.07 -2.31 16 25 H 0.06 2.36 6.73 -2.39 -0.02 2.34 16 26 H 0.08 2.14 6.68 -2.38 -0.02 2.12 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.10 3.57 6.53 -2.39 -0.02 3.55 16 29 H 0.09 3.70 8.06 -2.39 -0.02 3.68 16 30 H 0.28 13.32 8.32 -92.71 -0.77 12.55 16 31 H 0.12 5.85 5.25 -2.91 -0.02 5.84 16 32 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.17 5.38 8.06 -2.91 -0.02 5.36 16 35 H 0.13 3.17 8.14 -2.38 -0.02 3.15 16 36 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -60.54 330.65 5.55 -54.99 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 1.12 Total: 29.43 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 5.13 Total: 1.96 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -2.53 Total: -93.23 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.04 Total: -26.70 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.02 Total: 38.61 kcal Atomic # 17 Polarization: -4.92 SS G_CDS: -0.15 Total: -5.07 kcal Total: -60.54 5.55 -54.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892476987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.044 kcal (2) G-P(sol) polarization free energy of solvation -60.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds