Wall clock time and date at job start Tue Mar 31 2020 15:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99855 * 2 1 4 4 C 1.52997 * 109.47285 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47108 * 65.00106 * 4 3 2 6 6 C 1.46505 * 119.99781 * 270.00230 * 5 4 3 7 7 C 1.50705 * 109.47110 * 269.99581 * 6 5 4 8 8 H 1.08004 * 119.99864 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00070 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00175 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99913 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47199 * 90.00389 * 11 9 7 13 13 H 1.48506 * 109.47321 * 210.00009 * 11 9 7 14 14 H 1.48497 * 109.47402 * 330.00420 * 11 9 7 15 15 C 1.39002 * 120.00031 * 89.99854 * 5 4 3 16 16 C 1.39091 * 119.69973 * 5.00269 * 15 5 4 17 17 C 1.38418 * 119.08415 * 179.74367 * 16 15 5 18 18 Br 1.89094 * 120.75727 * 180.22889 * 17 16 15 19 19 C 1.38992 * 118.48359 * 0.25449 * 17 16 15 20 20 C 1.37986 * 119.31905 * 359.97438 * 19 17 16 21 21 C 1.50699 * 119.56583 * 179.97438 * 20 19 17 22 22 N 1.31987 * 120.86512 * 359.97438 * 20 19 17 23 23 H 1.08990 * 109.47380 * 300.00109 * 1 2 3 24 24 H 1.09004 * 109.46924 * 60.00630 * 1 2 3 25 25 H 1.09002 * 109.46963 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47253 * 59.99602 * 3 2 1 27 27 H 1.08998 * 109.47441 * 299.99672 * 3 2 1 28 28 H 1.09003 * 109.46935 * 304.99960 * 4 3 2 29 29 H 1.09001 * 109.47126 * 185.00313 * 4 3 2 30 30 H 1.08996 * 109.47144 * 29.99456 * 6 5 4 31 31 H 1.08996 * 109.46842 * 149.99918 * 6 5 4 32 32 H 0.96995 * 120.00336 * 179.97438 * 10 9 7 33 33 H 1.08002 * 120.46108 * 0.02562 * 16 15 5 34 34 H 1.08002 * 120.34093 * 179.97438 * 19 17 16 35 35 H 1.09000 * 109.47173 * 90.00710 * 21 20 19 36 36 H 1.09006 * 109.46659 * 210.00058 * 21 20 19 37 37 H 1.09000 * 109.46975 * 329.99753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1062 -0.8924 -1.3403 7 6 5.5018 -1.2980 -0.9412 8 1 6.2201 -0.5460 -0.6497 9 6 5.8611 -2.6290 -0.9472 10 7 4.9862 -3.5448 -1.3017 11 14 7.5907 -3.1318 -0.4519 12 1 7.6332 -3.3833 1.0111 13 1 7.9737 -4.3692 -1.1782 14 1 8.5401 -2.0426 -0.7946 15 6 4.2722 1.3572 -2.3535 16 6 4.2481 2.7426 -2.2323 17 6 4.5498 3.5201 -3.3370 18 35 4.5377 5.4076 -3.2237 19 6 4.8614 2.8817 -4.5317 20 6 4.8613 1.5027 -4.5810 21 6 5.1977 0.8048 -5.8735 22 7 4.5705 0.7869 -3.5108 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8507 0.5686 0.8427 29 1 3.9783 2.1767 0.0903 30 1 3.3858 -1.3630 -0.6713 31 1 3.9139 -1.2121 -2.3644 32 1 5.2391 -4.4812 -1.3062 33 1 4.0019 3.2054 -1.2880 34 1 5.1010 3.4590 -5.4125 35 1 6.2721 0.6269 -5.9215 36 1 4.6694 -0.1476 -5.9204 37 1 4.8949 1.4300 -6.7135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892893709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:51 Heat of formation + Delta-G solvation = 1.701958 kcal Electronic energy + Delta-G solvation = -20371.914036 eV Core-core repulsion = 17196.033916 eV Total energy + Delta-G solvation = -3175.880120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90435 -37.81370 -35.93231 -33.22393 -32.65702 -31.46744 -29.93945 -29.17938 -27.61496 -26.31630 -25.77730 -23.05681 -22.94926 -21.13947 -20.09113 -16.98537 -16.43376 -16.25248 -15.85540 -15.70980 -15.21788 -14.67834 -14.45042 -14.13885 -13.73046 -13.47835 -12.84635 -12.60636 -12.28173 -12.16819 -11.91517 -11.87153 -11.60767 -11.53111 -11.17765 -11.13184 -10.87550 -10.80629 -10.39717 -10.24435 -10.06985 -9.74448 -9.42382 -9.03809 -8.87035 -8.72719 -8.34053 -6.83458 -5.94207 -4.00312 1.51076 1.67431 1.80162 3.32864 3.39279 3.43108 3.70385 4.05760 4.29269 4.49433 4.85565 5.24721 5.30053 5.36741 5.37569 5.44727 5.50244 5.52667 5.56215 5.57424 5.69126 5.80662 5.85994 5.91627 5.94262 6.12446 6.22204 6.33613 6.44709 6.85271 7.22771 7.43024 7.63181 7.88376 8.02895 8.29864 8.34146 8.82693 9.05402 9.62992 11.11155 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.004687 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.001558 B = 5972.695168 C = 7264.529915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.044 3.956 4 C 0.124 3.876 5 N -0.573 5.573 6 C 0.256 3.744 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.434 3.566 16 C -0.246 4.246 17 C 0.005 3.995 18 Br -0.060 7.060 19 C -0.240 4.240 20 C 0.191 3.809 21 C -0.102 4.102 22 N -0.511 5.511 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.261 0.739 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 16.273 -3.234 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.035 4.035 4 C -0.001 4.001 5 N -0.279 5.279 6 C 0.137 3.863 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.195 3.805 16 C -0.274 4.274 17 C -0.082 4.082 18 Br 0.025 6.975 19 C -0.265 4.265 20 C 0.048 3.952 21 C -0.159 4.159 22 N -0.229 5.229 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.299 15.531 -3.032 16.687 hybrid contribution 0.765 0.445 0.412 0.976 sum -4.534 15.975 -2.620 16.812 Atomic orbital electron populations 1.22691 0.82057 1.02555 0.99102 1.88094 1.18721 1.26923 1.95149 1.23107 0.95301 0.85432 0.99628 1.21498 0.91166 0.99144 0.88311 1.47155 1.65410 1.08490 1.06798 1.19373 0.96395 0.71306 0.99238 1.21484 0.97519 0.92092 1.45147 0.92866 1.24874 0.97138 0.96409 0.95447 1.69941 1.34218 1.00903 1.48141 0.86590 0.84925 0.78007 0.78403 1.20763 1.21175 1.20097 1.18309 0.88257 0.86535 0.87376 1.21240 1.13934 0.93093 0.99150 1.21635 1.01176 0.89194 0.96235 1.96633 1.97706 1.04260 1.98890 1.21333 1.12395 0.95244 0.97546 1.20963 0.90998 0.89460 0.93793 1.20701 1.02611 1.00988 0.91617 1.67228 1.17894 1.39711 0.98077 0.94691 0.94650 0.89764 0.93042 0.93598 0.88749 0.90015 0.93923 0.93468 0.92899 0.84973 0.85254 0.90329 0.90186 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.56 9.53 -35.23 -0.34 -6.89 16 3 C 0.04 0.66 6.28 37.16 0.23 0.89 16 4 C 0.12 2.10 5.66 -4.04 -0.02 2.08 16 5 N -0.57 -12.25 2.54 -175.21 -0.44 -12.69 16 6 C 0.26 6.67 5.04 -5.19 -0.03 6.65 16 7 C -0.52 -14.75 9.39 -34.44 -0.32 -15.07 16 8 H 0.05 1.52 7.81 -52.48 -0.41 1.11 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 11 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.43 8.93 7.37 -155.02 -1.14 7.78 16 16 C -0.25 -4.22 9.05 -39.20 -0.35 -4.57 16 17 C 0.00 0.07 6.27 -39.24 -0.25 -0.17 16 18 Br -0.06 -0.77 33.77 -68.01 -2.30 -3.06 16 19 C -0.24 -3.74 9.52 -39.39 -0.37 -4.12 16 20 C 0.19 3.36 6.78 -82.62 -0.56 2.80 16 21 C -0.10 -1.42 10.17 36.00 0.37 -1.06 16 22 N -0.51 -11.01 8.99 -8.68 -0.08 -11.08 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 29 H 0.08 1.16 5.98 -51.93 -0.31 0.85 16 30 H 0.04 1.19 7.11 -51.93 -0.37 0.82 16 31 H 0.05 1.37 7.30 -51.93 -0.38 0.99 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 33 H 0.13 1.98 6.02 -52.49 -0.32 1.67 16 34 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -31.69 334.68 -8.97 -40.66 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.14 Total: -1.54 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.44 Total: -1.55 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.21 Total: -49.57 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.34 Total: -6.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.30 Total: -3.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.69 -8.97 -40.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892893709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.365 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds