Wall clock time and date at job start Tue Mar 31 2020 15:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99855 * 2 1 4 4 C 1.52997 * 109.47285 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47108 * 65.00106 * 4 3 2 6 6 C 1.46505 * 119.99781 * 270.00230 * 5 4 3 7 7 C 1.50705 * 109.47110 * 269.99581 * 6 5 4 8 8 H 1.08004 * 119.99864 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00070 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00175 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99913 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47199 * 90.00389 * 11 9 7 13 13 H 1.48506 * 109.47321 * 210.00009 * 11 9 7 14 14 H 1.48497 * 109.47402 * 330.00420 * 11 9 7 15 15 C 1.39002 * 120.00031 * 89.99854 * 5 4 3 16 16 C 1.39091 * 119.69973 * 5.00269 * 15 5 4 17 17 C 1.38418 * 119.08415 * 179.74367 * 16 15 5 18 18 Br 1.89094 * 120.75727 * 180.22889 * 17 16 15 19 19 C 1.38992 * 118.48359 * 0.25449 * 17 16 15 20 20 C 1.37986 * 119.31905 * 359.97438 * 19 17 16 21 21 C 1.50699 * 119.56583 * 179.97438 * 20 19 17 22 22 N 1.31987 * 120.86512 * 359.97438 * 20 19 17 23 23 H 1.08990 * 109.47380 * 300.00109 * 1 2 3 24 24 H 1.09004 * 109.46924 * 60.00630 * 1 2 3 25 25 H 1.09002 * 109.46963 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47253 * 59.99602 * 3 2 1 27 27 H 1.08998 * 109.47441 * 299.99672 * 3 2 1 28 28 H 1.09003 * 109.46935 * 304.99960 * 4 3 2 29 29 H 1.09001 * 109.47126 * 185.00313 * 4 3 2 30 30 H 1.08996 * 109.47144 * 29.99456 * 6 5 4 31 31 H 1.08996 * 109.46842 * 149.99918 * 6 5 4 32 32 H 0.96995 * 120.00336 * 179.97438 * 10 9 7 33 33 H 1.08002 * 120.46108 * 0.02562 * 16 15 5 34 34 H 1.08002 * 120.34093 * 179.97438 * 19 17 16 35 35 H 1.09000 * 109.47173 * 90.00710 * 21 20 19 36 36 H 1.09006 * 109.46659 * 210.00058 * 21 20 19 37 37 H 1.09000 * 109.46975 * 329.99753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1062 -0.8924 -1.3403 7 6 5.5018 -1.2980 -0.9412 8 1 6.2201 -0.5460 -0.6497 9 6 5.8611 -2.6290 -0.9472 10 7 4.9862 -3.5448 -1.3017 11 14 7.5907 -3.1318 -0.4519 12 1 7.6332 -3.3833 1.0111 13 1 7.9737 -4.3692 -1.1782 14 1 8.5401 -2.0426 -0.7946 15 6 4.2722 1.3572 -2.3535 16 6 4.2481 2.7426 -2.2323 17 6 4.5498 3.5201 -3.3370 18 35 4.5377 5.4076 -3.2237 19 6 4.8614 2.8817 -4.5317 20 6 4.8613 1.5027 -4.5810 21 6 5.1977 0.8048 -5.8735 22 7 4.5705 0.7869 -3.5108 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8507 0.5686 0.8427 29 1 3.9783 2.1767 0.0903 30 1 3.3858 -1.3630 -0.6713 31 1 3.9139 -1.2121 -2.3644 32 1 5.2391 -4.4812 -1.3062 33 1 4.0019 3.2054 -1.2880 34 1 5.1010 3.4590 -5.4125 35 1 6.2721 0.6269 -5.9215 36 1 4.6694 -0.1476 -5.9204 37 1 4.8949 1.4300 -6.7135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892893709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:51 Heat of formation + Delta-G solvation = -17.063610 kcal Electronic energy + Delta-G solvation = -20372.727772 eV Core-core repulsion = 17196.033916 eV Total energy + Delta-G solvation = -3176.693857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29415 -39.08378 -37.40372 -34.87183 -34.39261 -32.78181 -31.36002 -30.59199 -29.06283 -27.77882 -27.09957 -24.85666 -24.30456 -22.51860 -21.57381 -18.62900 -18.24661 -17.73906 -17.09352 -16.98423 -16.61091 -16.42314 -15.88566 -15.47890 -15.08987 -14.89512 -14.48533 -13.96298 -13.66426 -13.51843 -13.29271 -13.17018 -12.98609 -12.89290 -12.74642 -12.66332 -12.48079 -12.38609 -12.13655 -11.92755 -11.64323 -11.33293 -10.63164 -10.56659 -10.48614 -10.20878 -10.13667 -8.47259 -8.01928 -6.27068 0.19681 0.44669 0.46194 1.37212 1.38811 1.49187 2.22968 2.44069 2.87583 2.97113 3.15505 3.55687 3.98497 4.11589 4.14430 4.20554 4.26809 4.36566 4.46648 4.51107 4.52218 4.60207 4.67177 4.82676 4.82819 4.90586 4.93891 5.09787 5.20201 5.28442 5.39360 5.63706 5.80054 6.15641 6.27552 6.32746 6.63231 6.86830 7.38619 7.47663 8.92786 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.004687 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.001558 B = 5972.695168 C = 7264.529915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.048 3.952 4 C 0.120 3.880 5 N -0.589 5.589 6 C 0.285 3.715 7 C -0.533 4.533 8 H 0.045 0.955 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.961 3.039 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.275 1.275 15 C 0.408 3.592 16 C -0.240 4.240 17 C -0.003 4.003 18 Br -0.022 7.022 19 C -0.225 4.225 20 C 0.170 3.830 21 C -0.099 4.099 22 N -0.563 5.563 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.016 0.984 31 H 0.007 0.993 32 H 0.264 0.736 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 18.908 -3.365 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.297 5.297 6 C 0.163 3.837 7 C -0.572 4.572 8 H 0.063 0.937 9 C -0.187 4.187 10 N -0.567 5.567 11 Si 0.786 3.214 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.199 1.199 15 C 0.170 3.830 16 C -0.268 4.268 17 C -0.091 4.091 18 Br 0.064 6.936 19 C -0.249 4.249 20 C 0.029 3.971 21 C -0.156 4.156 22 N -0.282 5.282 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.034 0.966 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.171 0.829 34 H 0.180 0.820 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.687 18.220 -3.179 19.080 hybrid contribution 0.536 -0.223 0.358 0.682 sum -4.151 17.997 -2.821 18.684 Atomic orbital electron populations 1.22845 0.80090 1.03103 1.00672 1.88041 1.21111 1.28758 1.95486 1.23126 0.93711 0.84787 1.01283 1.21722 0.92892 0.99784 0.85945 1.46931 1.67322 1.06696 1.08761 1.18596 0.94603 0.74691 0.95761 1.21726 0.98333 0.92231 1.44956 0.93667 1.25733 1.01247 0.96410 0.95338 1.70069 1.36289 1.01255 1.49102 0.85530 0.79770 0.77562 0.78572 1.19477 1.20536 1.19947 1.18597 0.89511 0.87854 0.86997 1.21347 1.13261 0.91597 1.00577 1.21908 1.00040 0.91325 0.95778 1.96669 1.97551 1.00552 1.98856 1.21689 1.10046 0.94585 0.98619 1.21553 0.90952 0.90756 0.93887 1.20793 1.02779 1.00644 0.91384 1.67178 1.19480 1.42005 0.99550 0.91972 0.94055 0.89900 0.89290 0.93595 0.90511 0.87031 0.96644 0.97495 0.92692 0.82947 0.82025 0.89697 0.92028 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.41 -15.00 9.53 -148.98 -1.42 -16.42 16 3 C 0.05 1.43 6.28 71.98 0.45 1.88 16 4 C 0.12 4.09 5.66 86.38 0.49 4.58 16 5 N -0.59 -26.12 2.54 -708.25 -1.80 -27.92 16 6 C 0.28 15.78 5.04 85.63 0.43 16.21 16 7 C -0.53 -31.27 9.39 25.60 0.24 -31.03 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.01 0.66 5.46 84.65 0.46 1.13 16 10 N -0.93 -57.04 13.29 21.44 0.28 -56.75 16 11 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 15 C 0.41 17.04 7.37 133.05 0.98 18.02 16 16 C -0.24 -7.92 9.05 22.52 0.20 -7.72 16 17 C 0.00 -0.09 6.27 22.49 0.14 0.05 16 18 Br -0.02 -0.48 33.77 -20.37 -0.69 -1.17 16 19 C -0.22 -6.49 9.52 22.39 0.21 -6.27 16 20 C 0.17 5.90 6.78 42.48 0.29 6.19 16 21 C -0.10 -2.69 10.17 71.24 0.72 -1.96 16 22 N -0.56 -25.00 8.99 -181.38 -1.63 -26.63 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 29 H 0.11 3.02 5.98 -2.39 -0.01 3.01 16 30 H 0.02 0.93 7.11 -2.39 -0.02 0.91 16 31 H 0.01 0.43 7.30 -2.39 -0.02 0.42 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.15 4.22 6.02 -2.91 -0.02 4.20 16 34 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.11 2.06 8.08 -2.39 -0.02 2.04 16 Total: -1.00 -72.13 334.68 3.71 -68.41 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.06 Total: 9.60 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.87 Total: 3.08 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -3.14 Total: -111.30 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -1.42 Total: -16.42 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.69 Total: -1.17 kcal Total: -72.13 3.71 -68.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892893709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.351 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds