Wall clock time and date at job start Tue Mar 31 2020 15:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86798 * 119.99738 * 2 1 4 4 H 1.48500 * 109.47018 * 240.00407 * 3 2 1 5 5 H 1.48497 * 109.47474 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46850 * 120.00681 * 3 2 1 7 7 C 1.38646 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99807 * 179.97438 * 7 2 1 9 9 O 1.34818 * 120.00431 * 359.97438 * 7 2 1 10 10 C 1.35760 * 117.00570 * 185.06290 * 9 7 2 11 11 C 1.38906 * 120.05374 * 354.40187 * 10 9 7 12 12 C 1.38063 * 119.94507 * 179.97438 * 11 10 9 13 13 C 1.38430 * 120.05752 * 359.97438 * 12 11 10 14 14 Cl 1.73595 * 119.94530 * 180.02562 * 13 12 11 15 15 C 1.38389 * 120.11076 * 359.79162 * 13 12 11 16 16 C 1.38118 * 120.05583 * 0.45825 * 15 13 12 17 17 C 1.50698 * 120.02805 * 179.79351 * 16 15 13 18 18 S 1.81405 * 109.46864 * 269.72669 * 17 16 15 19 19 C 1.81406 * 102.99594 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47013 * 179.97438 * 19 18 17 21 21 O 1.42897 * 109.47154 * 180.02562 * 20 19 18 22 22 C 1.42900 * 113.99898 * 179.97438 * 21 20 19 23 23 C 1.53006 * 117.50054 * 218.61892 * 22 21 20 24 24 C 1.53001 * 60.00185 * 252.51161 * 23 22 21 25 25 H 0.97003 * 119.99651 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.02138 * 359.97438 * 11 10 9 27 27 H 1.07996 * 119.97056 * 179.97438 * 12 11 10 28 28 H 1.08000 * 119.97544 * 180.23402 * 15 13 12 29 29 H 1.08990 * 109.47061 * 149.72901 * 17 16 15 30 30 H 1.08998 * 109.47031 * 29.72147 * 17 16 15 31 31 H 1.09003 * 109.47149 * 59.99978 * 19 18 17 32 32 H 1.08997 * 109.47294 * 300.00129 * 19 18 17 33 33 H 1.08995 * 109.47301 * 59.99741 * 20 19 18 34 34 H 1.09006 * 109.47066 * 299.99921 * 20 19 18 35 35 H 1.09000 * 115.55320 * 4.33075 * 22 21 20 36 36 H 1.08998 * 117.49280 * 0.02562 * 23 22 21 37 37 H 1.09001 * 117.49656 * 145.02623 * 23 22 21 38 38 H 1.08997 * 117.49919 * 252.51326 * 24 23 22 39 39 H 1.09003 * 117.51732 * 107.47397 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2846 2.7465 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3683 -0.0005 10 6 2.0701 -3.5046 0.1057 11 6 3.4576 -3.4393 0.0910 12 6 4.2031 -4.5962 0.1997 13 6 3.5691 -5.8206 0.3237 14 17 4.5094 -7.2733 0.4609 15 6 2.1870 -5.8879 0.3435 16 6 1.4366 -4.7339 0.2299 17 6 -0.0685 -4.8084 0.2469 18 16 -0.6832 -5.0045 -1.4485 19 6 -2.4822 -5.0729 -1.2248 20 6 -3.1594 -5.2390 -2.5866 21 8 -4.5765 -5.2923 -2.4105 22 6 -5.3082 -5.4465 -3.6283 23 6 -6.6211 -4.6730 -3.7665 24 6 -6.6443 -6.1889 -3.5605 25 1 -0.4850 0.8401 0.0004 26 1 3.9526 -2.4843 -0.0054 27 1 5.2818 -4.5460 0.1879 28 1 1.6947 -6.8438 0.4442 29 1 -0.4728 -3.8918 0.6762 30 1 -0.3833 -5.6611 0.8484 31 1 -2.8257 -4.1494 -0.7588 32 1 -2.7370 -5.9188 -0.5863 33 1 -2.8159 -6.1623 -3.0531 34 1 -2.9046 -4.3928 -3.2248 35 1 -4.7043 -5.5781 -4.5261 36 1 -6.9264 -4.0462 -2.9286 37 1 -6.8810 -4.2955 -4.7554 38 1 -6.9196 -6.8086 -4.4139 39 1 -6.9650 -6.5600 -2.5871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902326084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:42 Heat of formation + Delta-G solvation = -32.914394 kcal Electronic energy + Delta-G solvation = -22025.522144 eV Core-core repulsion = 18473.028752 eV Total energy + Delta-G solvation = -3552.493392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.37536 -38.64647 -36.89780 -35.62683 -35.35270 -32.55292 -32.13234 -30.85023 -29.02971 -26.60428 -25.49903 -23.11687 -22.58852 -22.10090 -21.85076 -20.90360 -18.18901 -17.37561 -17.14759 -15.94232 -15.75729 -15.38109 -15.17676 -15.13280 -14.62135 -14.53571 -14.02419 -13.75818 -13.33178 -13.07164 -12.99645 -12.88138 -12.44318 -12.30776 -12.21998 -11.87371 -11.73391 -11.48801 -11.24926 -11.16398 -11.08560 -11.00655 -10.66325 -10.57886 -10.46422 -10.37806 -9.70486 -9.51774 -9.24443 -8.93989 -8.30703 -7.31943 -7.17799 -6.60720 -4.18230 1.45927 2.01862 2.24897 2.77473 3.02406 3.05952 3.06657 3.09583 3.53536 3.66152 3.84114 4.32914 4.62281 4.74922 4.82883 4.92035 4.99678 5.02605 5.20114 5.23670 5.26515 5.41185 5.42619 5.44135 5.57313 5.69962 5.73597 5.78152 5.91527 5.92958 6.01602 6.09819 6.34701 6.54853 6.78453 6.83580 7.03959 7.10339 7.16233 7.45981 7.81596 8.83500 9.47470 10.55237 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.007615 B = 0.003637 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3676.286870 B = 7697.402441 C =11130.584852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.153 6.153 10 C 0.170 3.830 11 C -0.224 4.224 12 C -0.052 4.052 13 C -0.128 4.128 14 Cl -0.104 7.104 15 C -0.041 4.041 16 C -0.148 4.148 17 C -0.013 4.013 18 S -0.242 6.242 19 C -0.097 4.097 20 C 0.084 3.916 21 O -0.356 6.356 22 C 0.019 3.981 23 C -0.190 4.190 24 C -0.185 4.185 25 H 0.273 0.727 26 H 0.138 0.862 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.675 -9.459 -3.663 11.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.112 0.888 9 O -0.054 6.054 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.072 4.072 13 C -0.155 4.155 14 Cl -0.076 7.076 15 C -0.062 4.062 16 C -0.151 4.151 17 C -0.160 4.160 18 S -0.013 6.013 19 C -0.245 4.245 20 C 0.007 3.993 21 O -0.275 6.275 22 C -0.039 4.039 23 C -0.227 4.227 24 C -0.223 4.223 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.137 0.863 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.639 -9.383 -4.442 11.370 hybrid contribution 0.039 0.799 0.927 1.224 sum -4.600 -8.584 -3.515 10.354 Atomic orbital electron populations 1.70028 1.05984 1.28174 1.44063 1.25308 0.95856 0.98907 0.96038 0.85771 0.78808 0.79521 0.79361 1.19302 1.20143 1.19358 1.21347 0.91934 0.80626 1.53217 0.88844 1.83983 1.34172 1.11312 1.75885 1.19127 0.90100 0.87681 0.91847 1.21089 0.93418 0.98735 1.11153 1.20669 0.99248 0.90449 0.96830 1.20217 0.91163 0.86479 1.17672 1.98280 1.73561 1.38460 1.97308 1.20388 0.91336 0.97164 0.97264 1.18076 0.92446 0.90940 1.13671 1.21891 0.94980 1.05279 0.93866 1.86926 1.01431 1.96603 1.16318 1.23175 0.95534 1.05810 0.99974 1.22151 0.79649 1.01325 0.96159 1.87814 1.17903 1.93371 1.28378 1.22636 0.87948 1.04529 0.88813 1.23392 1.01174 0.94688 1.03468 1.23339 1.00362 0.94936 1.03633 0.91682 0.84454 0.86260 0.85788 0.88330 0.90233 0.89130 0.89834 0.92297 0.91909 0.87134 0.88092 0.88242 0.88235 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.39 13.67 55.48 0.76 -22.63 16 2 C 0.05 1.17 5.49 -17.51 -0.10 1.07 16 3 Si 0.94 19.41 29.55 -169.99 -5.02 14.39 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 7 C -0.40 -10.28 9.49 30.88 0.29 -9.98 16 8 H 0.09 2.23 5.20 -52.49 -0.27 1.96 16 9 O -0.15 -3.98 8.81 0.05 0.00 -3.98 16 10 C 0.17 3.81 6.62 -39.11 -0.26 3.56 16 11 C -0.22 -4.56 9.17 -39.40 -0.36 -4.92 16 12 C -0.05 -0.93 9.82 -39.57 -0.39 -1.32 16 13 C -0.13 -2.23 6.32 -39.45 -0.25 -2.48 16 14 Cl -0.10 -1.58 28.95 -51.86 -1.50 -3.08 16 15 C -0.04 -0.71 9.48 -39.57 -0.37 -1.09 16 16 C -0.15 -2.91 5.16 -104.44 -0.54 -3.45 16 17 C -0.01 -0.24 5.85 36.00 0.21 -0.03 16 18 S -0.24 -4.31 21.72 -107.50 -2.33 -6.64 16 19 C -0.10 -1.45 6.31 37.16 0.23 -1.21 16 20 C 0.08 1.14 5.82 37.16 0.22 1.36 16 21 O -0.36 -4.90 10.60 -35.23 -0.37 -5.27 16 22 C 0.02 0.21 6.44 -26.72 -0.17 0.04 16 23 C -0.19 -1.81 10.48 -26.73 -0.28 -2.09 16 24 C -0.19 -1.68 10.48 -26.73 -0.28 -1.96 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.14 2.74 5.64 -52.48 -0.30 2.44 16 27 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.10 2.01 7.53 -51.93 -0.39 1.62 16 30 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 31 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 1.02 7.93 -51.93 -0.41 0.61 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -28.02 365.49 -10.17 -38.18 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.15 Total: 6.04 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.05 Total: -22.51 kcal Atomic # 7 Polarization: -23.39 SS G_CDS: 0.76 Total: -22.63 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.37 Total: -9.26 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -2.33 Total: -6.64 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -1.50 Total: -3.08 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.02 -10.17 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902326084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.267 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds