Wall clock time and date at job start Tue Mar 31 2020 15:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86798 * 119.99738 * 2 1 4 4 H 1.48500 * 109.47018 * 240.00407 * 3 2 1 5 5 H 1.48497 * 109.47474 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46850 * 120.00681 * 3 2 1 7 7 C 1.38646 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99807 * 179.97438 * 7 2 1 9 9 O 1.34818 * 120.00431 * 359.97438 * 7 2 1 10 10 C 1.35760 * 117.00570 * 185.06290 * 9 7 2 11 11 C 1.38906 * 120.05374 * 354.40187 * 10 9 7 12 12 C 1.38063 * 119.94507 * 179.97438 * 11 10 9 13 13 C 1.38430 * 120.05752 * 359.97438 * 12 11 10 14 14 Cl 1.73595 * 119.94530 * 180.02562 * 13 12 11 15 15 C 1.38389 * 120.11076 * 359.79162 * 13 12 11 16 16 C 1.38118 * 120.05583 * 0.45825 * 15 13 12 17 17 C 1.50698 * 120.02805 * 179.79351 * 16 15 13 18 18 S 1.81405 * 109.46864 * 269.72669 * 17 16 15 19 19 C 1.81406 * 102.99594 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47013 * 179.97438 * 19 18 17 21 21 O 1.42897 * 109.47154 * 180.02562 * 20 19 18 22 22 C 1.42900 * 113.99898 * 179.97438 * 21 20 19 23 23 C 1.53006 * 117.50054 * 218.61892 * 22 21 20 24 24 C 1.53001 * 60.00185 * 252.51161 * 23 22 21 25 25 H 0.97003 * 119.99651 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.02138 * 359.97438 * 11 10 9 27 27 H 1.07996 * 119.97056 * 179.97438 * 12 11 10 28 28 H 1.08000 * 119.97544 * 180.23402 * 15 13 12 29 29 H 1.08990 * 109.47061 * 149.72901 * 17 16 15 30 30 H 1.08998 * 109.47031 * 29.72147 * 17 16 15 31 31 H 1.09003 * 109.47149 * 59.99978 * 19 18 17 32 32 H 1.08997 * 109.47294 * 300.00129 * 19 18 17 33 33 H 1.08995 * 109.47301 * 59.99741 * 20 19 18 34 34 H 1.09006 * 109.47066 * 299.99921 * 20 19 18 35 35 H 1.09000 * 115.55320 * 4.33075 * 22 21 20 36 36 H 1.08998 * 117.49280 * 0.02562 * 23 22 21 37 37 H 1.09001 * 117.49656 * 145.02623 * 23 22 21 38 38 H 1.08997 * 117.49919 * 252.51326 * 24 23 22 39 39 H 1.09003 * 117.51732 * 107.47397 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2126 5 1 1.2846 2.7465 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3683 -0.0005 10 6 2.0701 -3.5046 0.1057 11 6 3.4576 -3.4393 0.0910 12 6 4.2031 -4.5962 0.1997 13 6 3.5691 -5.8206 0.3237 14 17 4.5094 -7.2733 0.4609 15 6 2.1870 -5.8879 0.3435 16 6 1.4366 -4.7339 0.2299 17 6 -0.0685 -4.8084 0.2469 18 16 -0.6832 -5.0045 -1.4485 19 6 -2.4822 -5.0729 -1.2248 20 6 -3.1594 -5.2390 -2.5866 21 8 -4.5765 -5.2923 -2.4105 22 6 -5.3082 -5.4465 -3.6283 23 6 -6.6211 -4.6730 -3.7665 24 6 -6.6443 -6.1889 -3.5605 25 1 -0.4850 0.8401 0.0004 26 1 3.9526 -2.4843 -0.0054 27 1 5.2818 -4.5460 0.1879 28 1 1.6947 -6.8438 0.4442 29 1 -0.4728 -3.8918 0.6762 30 1 -0.3833 -5.6611 0.8484 31 1 -2.8257 -4.1494 -0.7588 32 1 -2.7370 -5.9188 -0.5863 33 1 -2.8159 -6.1623 -3.0531 34 1 -2.9046 -4.3928 -3.2248 35 1 -4.7043 -5.5781 -4.5261 36 1 -6.9264 -4.0462 -2.9286 37 1 -6.8810 -4.2955 -4.7554 38 1 -6.9196 -6.8086 -4.4139 39 1 -6.9650 -6.5600 -2.5871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902326084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:42 Heat of formation + Delta-G solvation = -46.247417 kcal Electronic energy + Delta-G solvation = -22026.100307 eV Core-core repulsion = 18473.028752 eV Total energy + Delta-G solvation = -3553.071556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.00627 -39.56975 -38.50057 -37.05016 -36.24193 -34.33846 -33.71811 -31.99417 -30.59808 -28.16420 -27.30866 -24.29531 -23.46547 -23.30932 -22.93899 -22.42085 -19.93409 -18.82828 -18.32345 -17.33587 -16.95848 -16.78926 -16.71852 -16.25935 -16.16004 -15.84195 -15.38513 -15.22204 -14.86084 -14.51016 -14.36936 -14.00996 -13.81461 -13.68776 -13.61273 -13.54398 -12.79436 -12.74722 -12.62429 -12.45276 -12.43469 -12.17102 -12.09086 -11.87237 -11.84847 -11.41246 -11.26800 -11.04887 -10.75529 -10.14517 -9.80755 -8.94165 -8.61753 -8.47761 -6.14099 0.00779 0.46389 0.85201 1.34226 1.37471 1.46203 1.51830 1.61218 2.16417 2.58270 2.73183 2.89113 3.11228 3.37199 3.70449 3.79317 3.81295 3.86793 3.90579 4.04562 4.14891 4.27189 4.29399 4.34692 4.47155 4.49481 4.51246 4.63606 4.73921 4.76356 4.81474 4.99500 5.02426 5.08930 5.21512 5.31546 5.40423 5.53105 5.89038 5.96935 6.15775 6.96224 7.70391 8.72688 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.007615 B = 0.003637 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3676.286870 B = 7697.402441 C =11130.584852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.012 4.012 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.199 6.199 10 C 0.140 3.860 11 C -0.233 4.233 12 C -0.049 4.049 13 C -0.115 4.115 14 Cl -0.073 7.073 15 C -0.039 4.039 16 C -0.150 4.150 17 C -0.008 4.008 18 S -0.268 6.268 19 C -0.084 4.084 20 C 0.092 3.908 21 O -0.375 6.375 22 C -0.007 4.007 23 C -0.192 4.192 24 C -0.172 4.172 25 H 0.272 0.728 26 H 0.135 0.865 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 -11.672 -4.086 12.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.211 4.211 3 Si 0.831 3.169 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.122 0.878 9 O -0.103 6.103 10 C 0.086 3.914 11 C -0.253 4.253 12 C -0.068 4.068 13 C -0.143 4.143 14 Cl -0.044 7.044 15 C -0.059 4.059 16 C -0.153 4.153 17 C -0.155 4.155 18 S -0.039 6.039 19 C -0.232 4.232 20 C 0.014 3.986 21 O -0.295 6.295 22 C -0.065 4.065 23 C -0.229 4.229 24 C -0.209 4.209 25 H 0.081 0.919 26 H 0.153 0.847 27 H 0.167 0.833 28 H 0.171 0.829 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.144 0.856 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.484 -11.652 -4.861 13.097 hybrid contribution -0.231 1.097 1.070 1.550 sum -3.715 -10.555 -3.791 11.814 Atomic orbital electron populations 1.70173 1.07852 1.28855 1.47436 1.26450 0.96699 1.02402 0.95567 0.84739 0.77516 0.74696 0.79926 1.18266 1.19922 1.18161 1.21802 0.92640 0.81298 1.53459 0.87828 1.83979 1.35245 1.12087 1.79004 1.19681 0.91270 0.87812 0.92678 1.21213 0.92868 0.99829 1.11358 1.20949 1.00658 0.89643 0.95580 1.20455 0.91536 0.87618 1.14648 1.98303 1.72689 1.36415 1.97038 1.20685 0.91580 0.97473 0.96194 1.18382 0.93413 0.90788 1.12700 1.21839 0.94298 1.05044 0.94343 1.86882 1.04252 1.96456 1.16342 1.23138 0.93112 1.05633 1.01302 1.22023 0.79957 1.01686 0.94889 1.87767 1.17725 1.93699 1.30310 1.23000 0.88587 1.06516 0.88382 1.23476 1.00134 0.95173 1.04103 1.23428 0.98299 0.94807 1.04367 0.91853 0.84735 0.83258 0.82938 0.91535 0.86961 0.90938 0.88010 0.90724 0.92855 0.85618 0.89313 0.86302 0.85787 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.95 13.67 21.61 0.30 -52.65 16 2 C -0.01 -0.62 5.49 84.83 0.47 -0.16 16 3 Si 1.01 40.93 29.55 68.60 2.03 42.96 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 7 C -0.42 -22.66 9.49 67.92 0.64 -22.01 16 8 H 0.10 5.14 5.20 -2.91 -0.02 5.12 16 9 O -0.20 -10.99 8.81 -22.73 -0.20 -11.19 16 10 C 0.14 6.43 6.62 22.58 0.15 6.58 16 11 C -0.23 -9.45 9.17 22.39 0.21 -9.24 16 12 C -0.05 -1.63 9.82 22.27 0.22 -1.41 16 13 C -0.12 -3.66 6.32 22.35 0.14 -3.52 16 14 Cl -0.07 -1.92 28.95 -2.72 -0.08 -2.00 16 15 C -0.04 -1.27 9.48 22.28 0.21 -1.06 16 16 C -0.15 -5.88 5.16 -19.75 -0.10 -5.98 16 17 C -0.01 -0.30 5.85 71.24 0.42 0.12 16 18 S -0.27 -9.64 21.72 -56.49 -1.23 -10.87 16 19 C -0.08 -2.53 6.31 71.98 0.45 -2.07 16 20 C 0.09 2.47 5.82 71.98 0.42 2.89 16 21 O -0.38 -10.25 10.60 -148.98 -1.58 -11.83 16 22 C -0.01 -0.15 6.44 30.60 0.20 0.05 16 23 C -0.19 -3.46 10.48 30.60 0.32 -3.14 16 24 C -0.17 -2.82 10.48 30.60 0.32 -2.50 16 25 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.14 5.43 5.64 -2.91 -0.02 5.42 16 27 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 28 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 29 H 0.07 2.89 7.53 -2.40 -0.02 2.87 16 30 H 0.11 3.31 8.08 -2.39 -0.02 3.29 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.13 2.16 7.93 -2.39 -0.02 2.14 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -64.04 365.49 4.36 -59.68 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 1.06 Total: 27.34 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 4.06 Total: -41.45 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.30 Total: -52.65 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -1.78 Total: -23.01 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: -9.64 SS G_CDS: -1.23 Total: -10.87 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.08 Total: -2.00 kcal Total: -64.04 4.36 -59.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902326084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.437 kcal (2) G-P(sol) polarization free energy of solvation -64.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds