Wall clock time and date at job start Tue Mar 31 2020 14:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00029 * 2 1 4 4 H 1.48498 * 109.47419 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47247 * 299.99703 * 3 2 1 6 6 H 1.48502 * 109.47034 * 59.99453 * 3 2 1 7 7 C 1.37879 * 120.00620 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00503 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99399 * 0.02562 * 7 2 1 10 10 C 1.53034 * 109.45907 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31472 * 178.61307 * 10 9 7 12 12 N 1.46931 * 108.77256 * 54.63465 * 11 10 9 13 13 C 1.34778 * 120.62966 * 126.37201 * 12 11 10 14 14 O 1.21528 * 119.99634 * 4.22552 * 13 12 11 15 15 C 1.48077 * 120.00197 * 184.22894 * 13 12 11 16 16 C 1.39903 * 120.92110 * 306.16156 * 15 13 12 17 17 C 1.38045 * 119.04663 * 179.97438 * 16 15 13 18 18 N 1.31879 * 120.95593 * 359.73885 * 17 16 15 19 19 C 1.31838 * 122.05352 * 0.52836 * 18 17 16 20 20 Cl 1.73601 * 119.57852 * 179.74784 * 19 18 17 21 21 C 1.38531 * 120.84060 * 359.47604 * 19 18 17 22 22 Cl 1.73595 * 120.52803 * 180.27306 * 21 19 18 23 23 C 1.46921 * 118.73703 * 306.64507 * 12 11 10 24 24 C 1.52753 * 109.01098 * 53.31001 * 23 12 11 25 25 H 0.97001 * 120.00104 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.44881 * 299.96520 * 9 7 2 27 27 H 1.09004 * 109.49861 * 58.66129 * 10 9 7 28 28 H 1.08999 * 109.50052 * 298.56640 * 10 9 7 29 29 H 1.08999 * 109.58607 * 294.85051 * 11 10 9 30 30 H 1.09000 * 109.70589 * 174.49183 * 11 10 9 31 31 H 1.07997 * 120.47997 * 359.94924 * 16 15 13 32 32 H 1.07998 * 119.51746 * 180.02562 * 17 16 15 33 33 H 1.09010 * 109.58195 * 173.14957 * 23 12 11 34 34 H 1.09000 * 109.58634 * 293.56299 * 23 12 11 35 35 H 1.09001 * 109.56569 * 185.55254 * 24 23 12 36 36 H 1.09001 * 109.36315 * 65.49946 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2458 -3.6621 0.0005 11 6 1.4768 -4.9866 0.0355 12 7 0.5224 -5.0088 -1.0813 13 6 0.5121 -6.0347 -1.9554 14 8 1.2438 -6.9891 -1.7808 15 6 -0.3907 -5.9988 -3.1286 16 6 -1.7644 -5.7846 -2.9723 17 6 -2.5704 -5.7580 -4.0928 18 7 -2.0621 -5.9258 -5.2981 19 6 -0.7750 -6.1353 -5.4918 20 17 -0.1759 -6.3544 -7.1063 21 6 0.1063 -6.1773 -4.4237 22 17 1.8006 -6.4467 -4.6887 23 6 -0.4164 -3.8886 -1.2307 24 6 0.3700 -2.5792 -1.2482 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5566 0.8907 27 1 2.8884 -3.5912 0.8782 28 1 2.8557 -3.6192 -0.9019 29 1 0.9374 -5.0711 0.9789 30 1 2.1737 -5.8189 -0.0627 31 1 -2.1884 -5.6426 -1.9893 32 1 -3.6318 -5.5929 -3.9810 33 1 -0.9669 -3.9953 -2.1655 34 1 -1.1135 -3.8818 -0.3927 35 1 -0.3225 -1.7375 -1.2594 36 1 0.9975 -2.5465 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907292919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:49 Heat of formation + Delta-G solvation = -11.075503 kcal Electronic energy + Delta-G solvation = -23474.644041 eV Core-core repulsion = 19817.513604 eV Total energy + Delta-G solvation = -3657.130437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02070 -39.40699 -37.08473 -36.99297 -36.70567 -33.84082 -33.05007 -31.35994 -31.07735 -30.20113 -26.69524 -25.04274 -24.04376 -22.92993 -22.40577 -20.54320 -19.00646 -17.80012 -17.30397 -16.82621 -16.42939 -16.08315 -15.39561 -15.15513 -14.72649 -14.62639 -14.53743 -13.59217 -13.23762 -13.06588 -12.84944 -12.67132 -12.40011 -12.23887 -12.09149 -11.81682 -11.72054 -11.41714 -11.10389 -11.01907 -10.70764 -10.51761 -10.46455 -10.19944 -10.03210 -9.82172 -9.57911 -9.29203 -9.19606 -8.99654 -8.47387 -8.22272 -6.11294 -4.17073 0.37053 0.38285 1.38013 1.73574 2.59125 2.98099 3.22730 3.25179 3.31826 3.35754 4.06396 4.20024 4.29761 4.35213 4.58549 4.76712 5.10238 5.18457 5.36039 5.42925 5.64953 5.77520 5.84655 5.88729 6.00582 6.13447 6.28486 6.51191 6.72177 6.89902 6.98749 7.13329 7.18662 7.53763 7.63727 7.80799 7.93417 8.16831 8.31158 8.86465 9.48799 10.94501 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.003740 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.421386 B = 7485.683149 C = 7834.246570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.584 5.584 13 C 0.553 3.447 14 O -0.526 6.526 15 C -0.049 4.049 16 C -0.128 4.128 17 C 0.120 3.880 18 N -0.454 5.454 19 C 0.181 3.819 20 Cl -0.008 7.008 21 C -0.041 4.041 22 Cl -0.012 7.012 23 C 0.093 3.907 24 C -0.125 4.125 25 H 0.260 0.740 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 -11.670 -7.700 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.163 4.163 11 C -0.008 4.008 12 N -0.316 5.316 13 C 0.339 3.661 14 O -0.403 6.403 15 C -0.061 4.061 16 C -0.149 4.149 17 C -0.036 4.036 18 N -0.166 5.166 19 C 0.015 3.985 20 Cl 0.021 6.979 21 C -0.072 4.072 22 Cl 0.018 6.982 23 C -0.028 4.028 24 C -0.164 4.164 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.178 0.822 32 H 0.198 0.802 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.451 -12.046 -8.458 15.696 hybrid contribution 1.033 1.057 0.446 1.543 sum -4.419 -10.989 -8.012 14.300 Atomic orbital electron populations 1.69821 1.05867 1.26464 1.50963 1.24943 0.94869 0.99093 0.94954 0.86566 0.80238 0.83785 0.77616 1.19795 1.21020 1.20999 1.21227 0.93038 0.90467 1.50272 0.92574 1.18644 0.92623 0.91853 0.93872 1.22031 0.98980 0.93929 1.01321 1.21814 0.91538 1.00116 0.87372 1.48187 1.35973 1.20243 1.27173 1.17854 0.82677 0.83615 0.81991 1.90798 1.41358 1.33247 1.74943 1.20364 0.95156 0.97747 0.92875 1.22539 0.91866 0.98193 1.02283 1.22789 1.01024 0.94345 0.85488 1.67046 1.11506 1.11442 1.26582 1.21391 0.89549 1.00060 0.87504 1.98430 1.85826 1.94694 1.18936 1.21642 0.88706 1.04090 0.92788 1.98435 1.09478 1.93923 1.96388 1.22249 0.91962 0.87670 1.00932 1.21969 1.00209 0.94371 0.99814 0.92971 0.95294 0.91750 0.92786 0.91573 0.90003 0.82218 0.80241 0.91350 0.91168 0.87467 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.55 11.30 55.43 0.63 -22.92 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.36 29.54 -169.99 -5.02 15.33 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.14 8.56 -34.44 -0.29 -13.43 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.09 2.07 -91.73 -0.19 0.90 16 10 C -0.12 -2.39 5.30 -26.61 -0.14 -2.54 16 11 C 0.11 1.90 6.42 -3.71 -0.02 1.87 16 12 N -0.58 -9.67 2.98 -174.06 -0.52 -10.19 16 13 C 0.55 9.16 6.72 -12.22 -0.08 9.08 16 14 O -0.53 -9.93 15.70 5.34 0.08 -9.84 16 15 C -0.05 -0.70 4.91 -104.63 -0.51 -1.22 16 16 C -0.13 -1.39 7.55 -39.03 -0.29 -1.68 16 17 C 0.12 1.17 11.17 -17.60 -0.20 0.98 16 18 N -0.45 -5.61 10.31 -10.38 -0.11 -5.71 16 19 C 0.18 2.41 7.28 -17.44 -0.13 2.28 16 20 Cl -0.01 -0.09 28.13 -51.86 -1.46 -1.55 16 21 C -0.04 -0.59 6.38 -38.86 -0.25 -0.84 16 22 Cl -0.01 -0.17 26.57 -51.86 -1.38 -1.55 16 23 C 0.09 1.51 5.55 -3.94 -0.02 1.49 16 24 C -0.13 -2.60 5.14 -26.84 -0.14 -2.74 16 25 H 0.26 6.60 8.31 -40.82 -0.34 6.27 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.36 7.03 -51.93 -0.36 1.00 16 31 H 0.16 1.36 7.42 -52.49 -0.39 0.97 16 32 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.07 0.97 4.73 -51.92 -0.25 0.73 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.11 2.50 6.03 -51.93 -0.31 2.18 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -28.60 326.35 -9.03 -37.64 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -3.81 Total: -1.80 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.37 Total: -4.32 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.00 Total: -38.83 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -2.84 Total: -3.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.60 -9.03 -37.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907292919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.560 kcal (2) G-P(sol) polarization free energy of solvation -28.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds