Wall clock time and date at job start Tue Mar 31 2020 14:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00029 * 2 1 4 4 H 1.48498 * 109.47419 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47247 * 299.99703 * 3 2 1 6 6 H 1.48502 * 109.47034 * 59.99453 * 3 2 1 7 7 C 1.37879 * 120.00620 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00503 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99399 * 0.02562 * 7 2 1 10 10 C 1.53034 * 109.45907 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31472 * 178.61307 * 10 9 7 12 12 N 1.46931 * 108.77256 * 54.63465 * 11 10 9 13 13 C 1.34778 * 120.62966 * 126.37201 * 12 11 10 14 14 O 1.21528 * 119.99634 * 4.22552 * 13 12 11 15 15 C 1.48077 * 120.00197 * 184.22894 * 13 12 11 16 16 C 1.39903 * 120.92110 * 306.16156 * 15 13 12 17 17 C 1.38045 * 119.04663 * 179.97438 * 16 15 13 18 18 N 1.31879 * 120.95593 * 359.73885 * 17 16 15 19 19 C 1.31838 * 122.05352 * 0.52836 * 18 17 16 20 20 Cl 1.73601 * 119.57852 * 179.74784 * 19 18 17 21 21 C 1.38531 * 120.84060 * 359.47604 * 19 18 17 22 22 Cl 1.73595 * 120.52803 * 180.27306 * 21 19 18 23 23 C 1.46921 * 118.73703 * 306.64507 * 12 11 10 24 24 C 1.52753 * 109.01098 * 53.31001 * 23 12 11 25 25 H 0.97001 * 120.00104 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.44881 * 299.96520 * 9 7 2 27 27 H 1.09004 * 109.49861 * 58.66129 * 10 9 7 28 28 H 1.08999 * 109.50052 * 298.56640 * 10 9 7 29 29 H 1.08999 * 109.58607 * 294.85051 * 11 10 9 30 30 H 1.09000 * 109.70589 * 174.49183 * 11 10 9 31 31 H 1.07997 * 120.47997 * 359.94924 * 16 15 13 32 32 H 1.07998 * 119.51746 * 180.02562 * 17 16 15 33 33 H 1.09010 * 109.58195 * 173.14957 * 23 12 11 34 34 H 1.09000 * 109.58634 * 293.56299 * 23 12 11 35 35 H 1.09001 * 109.56569 * 185.55254 * 24 23 12 36 36 H 1.09001 * 109.36315 * 65.49946 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2458 -3.6621 0.0005 11 6 1.4768 -4.9866 0.0355 12 7 0.5224 -5.0088 -1.0813 13 6 0.5121 -6.0347 -1.9554 14 8 1.2438 -6.9891 -1.7808 15 6 -0.3907 -5.9988 -3.1286 16 6 -1.7644 -5.7846 -2.9723 17 6 -2.5704 -5.7580 -4.0928 18 7 -2.0621 -5.9258 -5.2981 19 6 -0.7750 -6.1353 -5.4918 20 17 -0.1759 -6.3544 -7.1063 21 6 0.1063 -6.1773 -4.4237 22 17 1.8006 -6.4467 -4.6887 23 6 -0.4164 -3.8886 -1.2307 24 6 0.3700 -2.5792 -1.2482 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5566 0.8907 27 1 2.8884 -3.5912 0.8782 28 1 2.8557 -3.6192 -0.9019 29 1 0.9374 -5.0711 0.9789 30 1 2.1737 -5.8189 -0.0627 31 1 -2.1884 -5.6426 -1.9893 32 1 -3.6318 -5.5929 -3.9810 33 1 -0.9669 -3.9953 -2.1655 34 1 -1.1135 -3.8818 -0.3927 35 1 -0.3225 -1.7375 -1.2594 36 1 0.9975 -2.5465 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907292919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:48 Heat of formation + Delta-G solvation = -26.800094 kcal Electronic energy + Delta-G solvation = -23475.325910 eV Core-core repulsion = 19817.513604 eV Total energy + Delta-G solvation = -3657.812306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08849 -40.61314 -38.52310 -37.97393 -37.79118 -35.45133 -34.28769 -32.80358 -32.20356 -31.66152 -28.29926 -26.36557 -25.00485 -24.43409 -23.85194 -21.92461 -20.41954 -19.03563 -18.41203 -18.29447 -17.76176 -17.34009 -16.58305 -16.48177 -16.26043 -15.78221 -15.55232 -14.94810 -14.90094 -14.58322 -14.30988 -14.02534 -13.59368 -13.39057 -13.32423 -13.14618 -12.90038 -12.82677 -12.76902 -12.45280 -12.17246 -12.13760 -11.99059 -11.60161 -11.46487 -11.09052 -11.02433 -10.94764 -10.64338 -10.39706 -10.08818 -9.66854 -8.08480 -6.20037 -0.62545 -0.53587 0.42237 0.70686 1.36246 1.39687 1.44232 1.52853 1.81874 2.25538 2.44251 2.98632 3.19068 3.26799 3.34995 3.67426 3.89679 4.03966 4.14066 4.26810 4.35397 4.42497 4.55129 4.59900 4.69617 4.83664 4.95356 5.07999 5.16726 5.21380 5.40052 5.47934 5.64377 5.99360 6.11585 6.27565 6.30269 6.40550 6.87280 6.88920 7.47687 8.95176 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.003740 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.421386 B = 7485.683149 C = 7834.246570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.044 0.956 9 C 0.046 3.954 10 C -0.116 4.116 11 C 0.119 3.881 12 N -0.587 5.587 13 C 0.557 3.443 14 O -0.553 6.553 15 C -0.070 4.070 16 C -0.118 4.118 17 C 0.136 3.864 18 N -0.464 5.464 19 C 0.173 3.827 20 Cl -0.005 7.005 21 C -0.058 4.058 22 Cl -0.029 7.029 23 C 0.106 3.894 24 C -0.117 4.117 25 H 0.262 0.738 26 H 0.012 0.988 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.190 0.810 32 H 0.228 0.772 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 -11.949 -7.690 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.063 0.937 9 C 0.028 3.972 10 C -0.154 4.154 11 C -0.003 4.003 12 N -0.318 5.318 13 C 0.343 3.657 14 O -0.432 6.432 15 C -0.082 4.082 16 C -0.138 4.138 17 C -0.020 4.020 18 N -0.175 5.175 19 C 0.008 3.992 20 Cl 0.024 6.976 21 C -0.089 4.089 22 Cl 0.000 7.000 23 C -0.016 4.016 24 C -0.155 4.155 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.207 0.793 32 H 0.244 0.756 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.346 -12.328 -8.459 16.658 hybrid contribution 1.580 1.162 0.450 2.012 sum -5.766 -11.166 -8.009 14.902 Atomic orbital electron populations 1.69908 1.06579 1.27041 1.51277 1.25534 0.95662 1.01592 0.94893 0.85750 0.79058 0.80685 0.77607 1.19937 1.20799 1.20556 1.21567 0.92858 0.92374 1.50450 0.93738 1.18614 0.93037 0.91736 0.93861 1.21876 0.98418 0.94354 1.00723 1.21714 0.91773 0.98331 0.88459 1.48182 1.35980 1.20368 1.27231 1.18135 0.82460 0.82934 0.82125 1.90780 1.42599 1.34274 1.75555 1.20312 0.96351 0.99882 0.91690 1.22933 0.90248 0.96445 1.04147 1.23603 1.02836 0.91485 0.84092 1.67172 1.10780 1.11650 1.27942 1.21437 0.89889 1.00364 0.87508 1.98426 1.85953 1.94676 1.18566 1.21739 0.88155 1.05590 0.93442 1.98421 1.10874 1.94181 1.96476 1.22131 0.91346 0.85017 1.03075 1.21726 0.99514 0.96337 0.97961 0.92886 0.96965 0.91390 0.94350 0.89781 0.89803 0.79319 0.75569 0.88853 0.89374 0.89816 0.96139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.97 11.30 21.45 0.24 -47.72 16 2 C 0.02 1.17 5.30 84.66 0.45 1.62 16 3 Si 0.94 41.83 29.54 68.60 2.03 43.86 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -27.83 8.56 25.60 0.22 -27.61 16 8 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 9 C 0.05 2.08 2.07 -11.51 -0.02 2.05 16 10 C -0.12 -4.45 5.30 30.67 0.16 -4.29 16 11 C 0.12 3.86 6.42 86.36 0.55 4.41 16 12 N -0.59 -18.47 2.98 -822.88 -2.45 -20.93 16 13 C 0.56 17.65 6.72 86.85 0.58 18.23 16 14 O -0.55 -20.49 15.70 -3.80 -0.06 -20.55 16 15 C -0.07 -1.87 4.91 -19.87 -0.10 -1.96 16 16 C -0.12 -2.09 7.55 22.63 0.17 -1.92 16 17 C 0.14 2.08 11.17 84.64 0.95 3.02 16 18 N -0.46 -10.12 10.31 -186.76 -1.93 -12.05 16 19 C 0.17 4.34 7.28 84.76 0.62 4.96 16 20 Cl 0.00 -0.12 28.13 -2.72 -0.08 -0.19 16 21 C -0.06 -1.61 6.38 22.73 0.15 -1.47 16 22 Cl -0.03 -0.86 26.57 -2.72 -0.07 -0.93 16 23 C 0.11 3.20 5.55 86.22 0.48 3.68 16 24 C -0.12 -4.83 5.14 30.53 0.16 -4.67 16 25 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 26 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.08 2.72 7.03 -2.39 -0.02 2.70 16 31 H 0.19 2.24 7.42 -2.91 -0.02 2.22 16 32 H 0.23 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.09 2.37 4.73 -2.38 -0.01 2.36 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.08 3.89 6.03 -2.39 -0.01 3.88 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -62.71 326.35 3.17 -59.54 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 1.12 Total: 2.91 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 4.36 Total: -3.94 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -4.13 Total: -80.70 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.55 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.15 Total: -1.12 kcal Total: -62.71 3.17 -59.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907292919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.745 kcal (2) G-P(sol) polarization free energy of solvation -62.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds