Wall clock time and date at job start Tue Mar 31 2020 14:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00157 * 2 1 4 4 H 1.48497 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47267 * 300.00379 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.99990 * 3 2 1 7 7 C 1.37879 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99966 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49740 * 59.93266 * 9 7 2 11 11 C 1.53040 * 109.49850 * 180.02562 * 9 7 2 12 12 C 1.53032 * 109.53705 * 181.34859 * 11 9 7 13 13 C 1.53194 * 109.31422 * 298.63499 * 12 11 9 14 14 N 1.46921 * 108.77664 * 54.63312 * 13 12 11 15 15 C 1.34779 * 120.63152 * 126.37066 * 14 13 12 16 16 O 1.21522 * 119.99979 * 185.80362 * 15 14 13 17 17 C 1.48074 * 119.99568 * 5.80065 * 15 14 13 18 18 C 1.39916 * 120.92586 * 53.78124 * 17 15 14 19 19 C 1.38031 * 119.05151 * 179.97438 * 18 17 15 20 20 N 1.31882 * 120.95875 * 0.25122 * 19 18 17 21 21 C 1.31840 * 122.05171 * 359.47676 * 20 19 18 22 22 Cl 1.73604 * 119.58046 * 180.29507 * 21 20 19 23 23 C 1.38532 * 120.83854 * 0.51956 * 21 20 19 24 24 Cl 1.73602 * 120.52617 * 179.76882 * 23 21 20 25 25 C 1.46926 * 118.74124 * 306.64910 * 14 13 12 26 26 H 0.97005 * 119.99772 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.45843 * 61.32382 * 11 9 7 28 28 H 1.09002 * 109.45827 * 301.36716 * 11 9 7 29 29 H 1.09002 * 109.50104 * 178.68041 * 12 11 9 30 30 H 1.09001 * 109.49872 * 58.58478 * 12 11 9 31 31 H 1.09003 * 109.57938 * 294.84626 * 13 12 11 32 32 H 1.08999 * 109.58895 * 174.42454 * 13 12 11 33 33 H 1.07993 * 120.46776 * 359.95111 * 18 17 15 34 34 H 1.07997 * 119.52428 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.59087 * 173.14426 * 25 14 13 36 36 H 1.09002 * 109.58517 * 293.56942 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5567 -0.8895 11 6 2.2450 -3.6629 -0.0005 12 6 1.4810 -4.9884 -0.0345 13 6 0.6052 -5.1007 1.2174 14 7 -0.2534 -3.9114 1.3021 15 6 -1.5899 -4.0365 1.4231 16 8 -2.2983 -3.0499 1.3861 17 6 -2.1949 -5.3763 1.6010 18 6 -1.7656 -6.2290 2.6238 19 6 -2.3569 -7.4694 2.7546 20 7 -3.3101 -7.8570 1.9298 21 6 -3.7492 -7.0847 0.9556 22 17 -5.0126 -7.6570 -0.0884 23 6 -3.2119 -5.8242 0.7517 24 17 -3.7921 -4.8164 -0.5373 25 6 0.3721 -2.5831 1.2461 26 1 -0.4850 0.8401 -0.0004 27 1 2.8558 -3.6187 0.9011 28 1 2.8876 -3.5915 -0.8781 29 1 2.1897 -5.8163 -0.0581 30 1 0.8511 -5.0227 -0.9234 31 1 1.2387 -5.1578 2.1025 32 1 -0.0146 -5.9948 1.1508 33 1 -0.9826 -5.9213 3.3008 34 1 -2.0311 -8.1339 3.5412 35 1 -0.4014 -1.8167 1.1984 36 1 0.9862 -2.4307 2.1336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912296199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:52 Heat of formation + Delta-G solvation = -11.637832 kcal Electronic energy + Delta-G solvation = -23589.763940 eV Core-core repulsion = 19932.609119 eV Total energy + Delta-G solvation = -3657.154821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89840 -39.20384 -36.96618 -36.94643 -36.58042 -33.75469 -32.73041 -31.79422 -31.21061 -29.86126 -25.99765 -25.15154 -23.92580 -23.71321 -21.93407 -20.42585 -18.93857 -17.68658 -17.25229 -16.65400 -16.32154 -15.95257 -15.25265 -15.01667 -14.67464 -14.57176 -14.21704 -13.83531 -13.37936 -13.02464 -12.71318 -12.62627 -12.26244 -12.16591 -12.00075 -11.96030 -11.75114 -11.09657 -11.01548 -11.00056 -10.59734 -10.50573 -10.35139 -10.29393 -10.00544 -9.91902 -9.47341 -9.19983 -9.13970 -9.00091 -8.50530 -7.93339 -6.05247 -4.14490 0.40875 0.43527 1.41127 1.84164 2.83737 3.14846 3.27068 3.35555 3.38077 3.42055 4.11266 4.28332 4.37093 4.40978 4.63386 4.80502 5.14891 5.17050 5.25206 5.36029 5.49637 5.54742 5.84469 5.88208 6.06224 6.21125 6.50786 6.55401 6.74413 6.88339 6.98827 7.10327 7.20157 7.54547 7.78320 7.88752 8.04604 8.30018 8.54567 8.89951 9.51832 10.99952 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.003741 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.066805 B = 7483.693615 C = 8111.471922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.030 0.970 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.104 3.896 14 N -0.592 5.592 15 C 0.545 3.455 16 O -0.502 6.502 17 C -0.047 4.047 18 C -0.132 4.132 19 C 0.117 3.883 20 N -0.458 5.458 21 C 0.180 3.820 22 Cl -0.009 7.009 23 C -0.045 4.045 24 Cl -0.006 7.006 25 C 0.112 3.888 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.158 0.842 34 H 0.178 0.822 35 H 0.126 0.874 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 -16.568 4.367 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.019 4.019 14 N -0.324 5.324 15 C 0.329 3.671 16 O -0.376 6.376 17 C -0.060 4.060 18 C -0.153 4.153 19 C -0.039 4.039 20 N -0.169 5.169 21 C 0.014 3.986 22 Cl 0.020 6.980 23 C -0.076 4.076 24 Cl 0.023 6.977 25 C -0.007 4.007 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.175 0.825 34 H 0.195 0.805 35 H 0.143 0.857 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.007 -16.646 4.236 17.891 hybrid contribution 0.681 1.581 -0.270 1.742 sum -4.326 -15.065 3.966 16.168 Atomic orbital electron populations 1.69884 1.05731 1.26842 1.49210 1.25056 0.94878 0.99299 0.94753 0.86538 0.80052 0.83764 0.77684 1.19769 1.20977 1.20955 1.21091 0.92958 0.89966 1.51958 0.92227 1.18905 0.92632 0.92458 0.94015 0.95176 1.21628 0.98554 0.93866 1.00769 1.21947 0.98620 0.99360 0.97295 1.21793 0.93528 0.87532 0.99081 1.48474 1.04451 1.09604 1.69889 1.17877 0.83191 0.86786 0.79232 1.90879 1.60362 1.37511 1.48864 1.20669 0.94381 0.96356 0.94571 1.22498 1.00920 0.93955 0.97884 1.22743 0.90584 0.94389 0.96214 1.67034 1.12431 1.34442 1.03028 1.21412 0.94023 0.89163 0.93997 1.98429 1.47939 1.89273 1.62391 1.21745 0.97902 0.92590 0.95343 1.98457 1.86866 1.66790 1.45558 1.22345 0.98858 0.80493 0.99001 0.92617 0.93050 0.92826 0.91974 0.92061 0.91446 0.91437 0.82483 0.80482 0.85653 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 11.39 55.43 0.63 -24.35 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -13.62 8.57 -34.44 -0.29 -13.91 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.92 2.24 -91.87 -0.21 0.72 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.07 5.11 -26.69 -0.14 -2.21 16 12 C -0.13 -2.04 6.08 -26.61 -0.16 -2.20 16 13 C 0.10 1.48 5.63 -3.71 -0.02 1.46 16 14 N -0.59 -11.00 2.98 -174.06 -0.52 -11.52 16 15 C 0.55 10.38 6.69 -12.22 -0.08 10.30 16 16 O -0.50 -11.68 15.68 5.35 0.08 -11.60 16 17 C -0.05 -0.71 4.63 -104.62 -0.48 -1.19 16 18 C -0.13 -1.41 7.91 -39.03 -0.31 -1.72 16 19 C 0.12 1.09 11.17 -17.61 -0.20 0.90 16 20 N -0.46 -5.50 10.31 -10.38 -0.11 -5.61 16 21 C 0.18 2.40 7.28 -17.44 -0.13 2.27 16 22 Cl -0.01 -0.11 28.13 -51.86 -1.46 -1.57 16 23 C -0.04 -0.67 6.38 -38.86 -0.25 -0.92 16 24 Cl -0.01 -0.10 26.57 -51.86 -1.38 -1.48 16 25 C 0.11 2.56 5.39 -3.93 -0.02 2.53 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.82 5.39 -51.93 -0.28 0.54 16 33 H 0.16 1.31 7.80 -52.49 -0.41 0.90 16 34 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 3.38 5.10 -51.93 -0.27 3.11 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -30.50 327.68 -9.09 -39.59 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -3.88 Total: -1.75 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.38 Total: -2.37 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.01 Total: -41.49 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -2.84 Total: -3.05 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.50 -9.09 -39.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912296199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.951 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds