Wall clock time and date at job start Tue Mar 31 2020 14:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00157 * 2 1 4 4 H 1.48497 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47267 * 300.00379 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.99990 * 3 2 1 7 7 C 1.37879 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99966 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49740 * 59.93266 * 9 7 2 11 11 C 1.53040 * 109.49850 * 180.02562 * 9 7 2 12 12 C 1.53032 * 109.53705 * 181.34859 * 11 9 7 13 13 C 1.53194 * 109.31422 * 298.63499 * 12 11 9 14 14 N 1.46921 * 108.77664 * 54.63312 * 13 12 11 15 15 C 1.34779 * 120.63152 * 126.37066 * 14 13 12 16 16 O 1.21522 * 119.99979 * 185.80362 * 15 14 13 17 17 C 1.48074 * 119.99568 * 5.80065 * 15 14 13 18 18 C 1.39916 * 120.92586 * 53.78124 * 17 15 14 19 19 C 1.38031 * 119.05151 * 179.97438 * 18 17 15 20 20 N 1.31882 * 120.95875 * 0.25122 * 19 18 17 21 21 C 1.31840 * 122.05171 * 359.47676 * 20 19 18 22 22 Cl 1.73604 * 119.58046 * 180.29507 * 21 20 19 23 23 C 1.38532 * 120.83854 * 0.51956 * 21 20 19 24 24 Cl 1.73602 * 120.52617 * 179.76882 * 23 21 20 25 25 C 1.46926 * 118.74124 * 306.64910 * 14 13 12 26 26 H 0.97005 * 119.99772 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.45843 * 61.32382 * 11 9 7 28 28 H 1.09002 * 109.45827 * 301.36716 * 11 9 7 29 29 H 1.09002 * 109.50104 * 178.68041 * 12 11 9 30 30 H 1.09001 * 109.49872 * 58.58478 * 12 11 9 31 31 H 1.09003 * 109.57938 * 294.84626 * 13 12 11 32 32 H 1.08999 * 109.58895 * 174.42454 * 13 12 11 33 33 H 1.07993 * 120.46776 * 359.95111 * 18 17 15 34 34 H 1.07997 * 119.52428 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.59087 * 173.14426 * 25 14 13 36 36 H 1.09002 * 109.58517 * 293.56942 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5567 -0.8895 11 6 2.2450 -3.6629 -0.0005 12 6 1.4810 -4.9884 -0.0345 13 6 0.6052 -5.1007 1.2174 14 7 -0.2534 -3.9114 1.3021 15 6 -1.5899 -4.0365 1.4231 16 8 -2.2983 -3.0499 1.3861 17 6 -2.1949 -5.3763 1.6010 18 6 -1.7656 -6.2290 2.6238 19 6 -2.3569 -7.4694 2.7546 20 7 -3.3101 -7.8570 1.9298 21 6 -3.7492 -7.0847 0.9556 22 17 -5.0126 -7.6570 -0.0884 23 6 -3.2119 -5.8242 0.7517 24 17 -3.7921 -4.8164 -0.5373 25 6 0.3721 -2.5831 1.2461 26 1 -0.4850 0.8401 -0.0004 27 1 2.8558 -3.6187 0.9011 28 1 2.8876 -3.5915 -0.8781 29 1 2.1897 -5.8163 -0.0581 30 1 0.8511 -5.0227 -0.9234 31 1 1.2387 -5.1578 2.1025 32 1 -0.0146 -5.9948 1.1508 33 1 -0.9826 -5.9213 3.3008 34 1 -2.0311 -8.1339 3.5412 35 1 -0.4014 -1.8167 1.1984 36 1 0.9862 -2.4307 2.1336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912296199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:51 Heat of formation + Delta-G solvation = -30.585810 kcal Electronic energy + Delta-G solvation = -23590.585586 eV Core-core repulsion = 19932.609119 eV Total energy + Delta-G solvation = -3657.976467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.00728 -40.53576 -38.44181 -37.95786 -37.76437 -35.44351 -34.11315 -33.24012 -32.16512 -31.52458 -27.49887 -26.82830 -25.04826 -24.84387 -23.47015 -21.85629 -20.38430 -19.00457 -18.36107 -18.19601 -17.69478 -17.25104 -16.60436 -16.47216 -16.06084 -15.75763 -15.40832 -15.23676 -14.86224 -14.58884 -14.30396 -14.00142 -13.53018 -13.50301 -13.31019 -13.00952 -12.91664 -12.77519 -12.67191 -12.29700 -12.23252 -12.11696 -11.88638 -11.65141 -11.52441 -11.06692 -11.00708 -10.93775 -10.64515 -10.52213 -10.10183 -9.50382 -8.10772 -6.27829 -0.60466 -0.52236 0.43839 0.75252 1.39699 1.42410 1.51020 1.53675 1.94382 2.27606 2.42262 3.07238 3.18789 3.28758 3.38730 3.69593 3.92946 4.00079 4.13636 4.18717 4.34342 4.57978 4.63976 4.71496 4.77183 4.84338 5.08755 5.10924 5.22457 5.25822 5.34137 5.50646 5.60988 5.90135 5.99901 6.31283 6.31983 6.48288 6.85297 7.08584 7.42920 8.92495 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.003741 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.066805 B = 7483.693615 C = 8111.471922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.259 1.259 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.036 3.964 10 H -0.019 1.019 11 C -0.104 4.104 12 C -0.129 4.129 13 C 0.100 3.900 14 N -0.593 5.593 15 C 0.543 3.457 16 O -0.559 6.559 17 C -0.065 4.065 18 C -0.114 4.114 19 C 0.142 3.858 20 N -0.462 5.462 21 C 0.176 3.824 22 Cl -0.006 7.006 23 C -0.062 4.062 24 Cl -0.036 7.036 25 C 0.127 3.873 26 H 0.259 0.741 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.107 0.893 30 H 0.041 0.959 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.190 0.810 34 H 0.233 0.767 35 H 0.078 0.922 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.983 -19.699 6.486 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.183 1.183 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.017 3.983 10 H 0.000 1.000 11 C -0.142 4.142 12 C -0.167 4.167 13 C -0.022 4.022 14 N -0.325 5.325 15 C 0.329 3.671 16 O -0.438 6.438 17 C -0.077 4.077 18 C -0.134 4.134 19 C -0.015 4.015 20 N -0.173 5.173 21 C 0.011 3.989 22 Cl 0.023 6.977 23 C -0.094 4.094 24 Cl -0.007 7.007 25 C 0.005 3.995 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.207 0.793 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.010 -19.827 6.343 21.034 hybrid contribution 0.099 2.463 -0.882 2.619 sum -2.911 -17.364 5.461 18.434 Atomic orbital electron populations 1.70090 1.07398 1.27143 1.50706 1.25863 0.95479 1.02816 0.94641 0.85548 0.79395 0.79651 0.77333 1.18316 1.21256 1.20795 1.21529 0.93328 0.91320 1.50933 0.91823 1.18846 0.93138 0.93965 0.92333 1.00040 1.21509 0.97604 0.93788 1.01282 1.21927 0.99005 0.98620 0.97132 1.22172 0.93589 0.86451 0.99956 1.48437 1.05070 1.09517 1.69430 1.18453 0.82897 0.87967 0.77797 1.90844 1.61640 1.40054 1.51257 1.20358 0.95414 0.95006 0.96964 1.22904 1.00933 0.93375 0.96164 1.23645 0.88177 0.94084 0.95597 1.67202 1.13152 1.34088 1.02904 1.21391 0.94243 0.88669 0.94556 1.98428 1.47755 1.89039 1.62478 1.21825 0.98936 0.93160 0.95437 1.98442 1.87342 1.67837 1.47073 1.21719 0.97311 0.82007 0.98468 0.93199 0.91595 0.93193 0.87469 0.94006 0.87991 0.88546 0.79283 0.75088 0.90370 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.91 11.39 21.45 0.24 -54.66 16 2 C 0.01 0.63 5.30 84.66 0.45 1.08 16 3 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.53 -28.47 8.57 25.60 0.22 -28.25 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.04 1.77 2.24 -11.60 -0.03 1.74 16 10 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 11 C -0.10 -3.77 5.11 30.62 0.16 -3.62 16 12 C -0.13 -3.56 6.08 30.67 0.19 -3.37 16 13 C 0.10 2.48 5.63 86.36 0.49 2.97 16 14 N -0.59 -21.86 2.98 -822.89 -2.45 -24.31 16 15 C 0.54 20.95 6.69 86.85 0.58 21.53 16 16 O -0.56 -27.68 15.68 -3.78 -0.06 -27.74 16 17 C -0.07 -1.86 4.63 -19.87 -0.09 -1.95 16 18 C -0.11 -1.92 7.91 22.63 0.18 -1.74 16 19 C 0.14 1.85 11.17 84.64 0.95 2.79 16 20 N -0.46 -9.36 10.31 -186.76 -1.93 -11.28 16 21 C 0.18 4.39 7.28 84.76 0.62 5.01 16 22 Cl -0.01 -0.13 28.13 -2.72 -0.08 -0.21 16 23 C -0.06 -1.84 6.38 22.73 0.15 -1.70 16 24 Cl -0.04 -1.24 26.57 -2.72 -0.07 -1.31 16 25 C 0.13 5.94 5.39 86.22 0.46 6.40 16 26 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 1.89 5.39 -2.39 -0.01 1.88 16 33 H 0.19 2.00 7.80 -2.91 -0.02 1.98 16 34 H 0.23 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.08 4.49 5.10 -2.39 -0.01 4.48 16 36 H 0.05 2.29 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -74.18 327.68 3.12 -71.06 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: 1.12 Total: 2.01 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 4.31 Total: 0.90 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -4.13 Total: -90.26 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.06 Total: -27.74 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.15 Total: -1.52 kcal Total: -74.18 3.12 -71.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912296199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.473 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds