Wall clock time and date at job start Tue Mar 31 2020 15:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00027 * 2 1 4 4 H 1.48500 * 109.47079 * 240.00348 * 3 2 1 5 5 H 1.48505 * 109.46888 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47257 * 119.99739 * 3 2 1 7 7 C 1.38699 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00298 * 179.97438 * 7 2 1 9 9 O 1.34820 * 119.99681 * 359.97438 * 7 2 1 10 10 C 1.35506 * 116.99913 * 174.92723 * 9 7 2 11 11 C 1.38831 * 120.16590 * 5.66860 * 10 9 7 12 12 C 1.38023 * 120.07644 * 180.02562 * 11 10 9 13 13 C 1.38590 * 120.41728 * 359.71402 * 12 11 10 14 14 C 1.37811 * 120.32866 * 0.56259 * 13 12 11 15 15 C 1.39735 * 119.91015 * 359.44474 * 14 13 12 16 16 C 1.47384 * 120.20035 * 180.29828 * 15 14 13 17 17 O 1.21527 * 120.00112 * 180.02562 * 16 15 14 18 18 O 1.34757 * 119.99996 * 359.97438 * 16 15 14 19 19 C 1.35975 * 117.00097 * 175.01652 * 18 16 15 20 20 C 1.38719 * 119.98331 * 255.05582 * 19 18 16 21 21 C 1.38200 * 120.08080 * 179.78243 * 20 19 18 22 22 C 1.38546 * 120.09752 * 0.46962 * 21 20 19 23 23 C 1.39276 * 119.92306 * 359.78408 * 22 21 20 24 24 C 1.38517 * 119.88033 * 359.97438 * 23 22 21 25 25 O 1.36508 * 108.64423 * 179.97438 * 23 22 21 26 26 C 1.43976 * 105.49833 * 342.70751 * 25 23 22 27 27 O 1.36591 * 131.46075 * 179.75759 * 22 21 20 28 28 H 0.96996 * 119.99847 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.96414 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.79225 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.83854 * 180.28612 * 13 12 11 32 32 H 1.07993 * 120.04298 * 179.71285 * 14 13 12 33 33 H 1.07997 * 119.96486 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.95319 * 180.27564 * 21 20 19 35 35 H 1.07996 * 120.00488 * 179.97438 * 24 23 22 36 36 H 1.09005 * 110.57062 * 268.58642 * 26 25 23 37 37 H 1.08997 * 110.57604 * 145.70993 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0088 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0001 9 8 1.3347 -2.3687 0.0016 10 6 2.0686 -3.5028 -0.1047 11 6 3.4555 -3.4403 -0.0901 12 6 4.2012 -4.5966 -0.1990 13 6 3.5747 -5.8271 -0.3176 14 6 2.1991 -5.9083 -0.3397 15 6 1.4307 -4.7464 -0.2304 16 6 -0.0409 -4.8265 -0.2467 17 8 -0.7057 -3.8136 -0.1519 18 8 -0.6492 -6.0228 -0.3677 19 6 -2.0055 -6.0383 -0.2712 20 6 -2.6130 -6.5116 0.8826 21 6 -3.9912 -6.5241 0.9846 22 6 -4.7699 -6.0731 -0.0689 23 6 -4.1623 -5.6024 -1.2303 24 6 -2.7807 -5.5861 -1.3284 25 8 -5.1355 -5.2212 -2.1083 26 6 -6.3452 -5.8424 -1.6353 27 8 -6.1247 -5.9865 -0.2197 28 1 -0.4850 0.8400 -0.0004 29 1 3.9514 -2.4856 0.0058 30 1 5.2798 -4.5425 -0.1875 31 1 4.1673 -6.7263 -0.3976 32 1 1.7158 -6.8691 -0.4369 33 1 -2.0083 -6.8671 1.7037 34 1 -4.4619 -6.8888 1.8855 35 1 -2.3074 -5.2219 -2.2282 36 1 -6.4830 -6.8175 -2.1026 37 1 -7.2052 -5.2004 -1.8255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919971279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:04 Heat of formation + Delta-G solvation = -94.572401 kcal Electronic energy + Delta-G solvation = -26804.740031 eV Core-core repulsion = 22673.419831 eV Total energy + Delta-G solvation = -4131.320200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.21529 -40.59139 -39.11913 -37.34852 -36.48006 -36.33326 -35.68852 -32.47367 -30.96029 -30.55558 -29.34160 -29.02235 -25.97455 -25.54276 -24.25525 -23.09921 -22.57204 -21.60748 -20.51679 -18.32692 -18.10283 -17.94690 -17.75137 -17.43645 -16.85681 -16.31457 -15.56379 -15.31806 -14.74020 -14.52349 -14.49505 -14.15846 -14.02447 -13.90642 -13.82294 -13.48165 -13.16673 -13.02004 -12.91420 -12.69379 -12.38036 -11.80792 -11.61862 -11.39715 -11.23312 -10.99990 -10.95529 -10.81770 -10.54515 -10.48944 -9.89218 -9.41636 -8.97947 -8.86380 -8.41086 -8.02149 -7.45525 -6.56166 -4.16480 0.95017 1.17344 1.49836 2.24264 2.66024 3.00548 3.05989 3.08388 3.11165 3.26893 3.37433 3.80736 3.84706 4.42852 4.46826 4.52505 4.75163 4.94679 4.95887 5.05642 5.07647 5.15937 5.32365 5.45077 5.50704 5.61570 5.81769 5.98395 6.03226 6.04812 6.11878 6.21914 6.35684 6.51021 6.58899 6.83158 6.88956 7.00357 7.14116 7.16341 7.21786 7.58343 7.81367 8.59537 8.83117 9.50415 10.56948 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.003718 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.928385 B = 7529.884572 C = 9412.974638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.046 3.954 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.404 4.404 8 H 0.097 0.903 9 O -0.123 6.123 10 C 0.191 3.809 11 C -0.237 4.237 12 C -0.042 4.042 13 C -0.234 4.234 14 C -0.014 4.014 15 C -0.217 4.217 16 C 0.494 3.506 17 O -0.455 6.455 18 O -0.300 6.300 19 C 0.115 3.885 20 C -0.111 4.111 21 C -0.086 4.086 22 C 0.025 3.975 23 C 0.048 3.952 24 C -0.102 4.102 25 O -0.306 6.306 26 C 0.213 3.787 27 O -0.309 6.309 28 H 0.275 0.725 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.083 0.917 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.527 -13.049 -1.014 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.479 4.479 8 H 0.114 0.886 9 O -0.021 6.021 10 C 0.131 3.869 11 C -0.256 4.256 12 C -0.060 4.060 13 C -0.253 4.253 14 C -0.033 4.033 15 C -0.220 4.220 16 C 0.340 3.660 17 O -0.338 6.338 18 O -0.218 6.218 19 C 0.073 3.927 20 C -0.129 4.129 21 C -0.105 4.105 22 C -0.019 4.019 23 C 0.003 3.997 24 C -0.121 4.121 25 O -0.222 6.222 26 C 0.102 3.898 27 O -0.225 6.225 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.101 0.899 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.435 -12.290 -1.017 13.477 hybrid contribution 0.226 0.880 -0.215 0.934 sum -5.208 -11.410 -1.231 12.603 Atomic orbital electron populations 1.70104 1.06077 1.28241 1.41503 1.25439 0.95844 0.99129 0.95897 0.85750 0.78807 0.79339 0.79392 1.19215 1.20057 1.19209 1.21507 0.92029 0.80817 1.53562 0.88557 1.84134 1.33959 1.11248 1.72737 1.19193 0.90048 0.86859 0.90791 1.21110 0.92904 0.99564 1.12041 1.20988 0.98861 0.92258 0.93906 1.20546 0.94048 0.97259 1.13425 1.20976 0.93631 0.96151 0.92528 1.17867 0.87353 0.92757 1.23980 1.21542 0.89228 0.80355 0.74902 1.91059 1.65409 1.34214 1.43139 1.84692 1.16909 1.35873 1.84340 1.17923 0.81998 0.99969 0.92825 1.20925 0.93473 1.01768 0.96751 1.19810 0.91601 1.01432 0.97651 1.19785 0.82529 1.03103 0.96528 1.19379 0.90645 1.00288 0.89368 1.20166 0.89128 1.01887 1.00898 1.87389 1.16978 1.68776 1.49032 1.25618 0.88881 0.98689 0.76661 1.87359 1.19450 1.89935 1.25795 0.91530 0.84738 0.86858 0.86845 0.85625 0.83511 0.83978 0.84125 0.89932 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.50 13.67 55.48 0.76 -23.74 16 2 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 19.96 29.55 -169.99 -5.02 14.94 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.40 -11.08 9.49 30.90 0.29 -10.78 16 8 H 0.10 2.36 5.21 -52.49 -0.27 2.09 16 9 O -0.12 -3.53 7.84 -21.04 -0.16 -3.69 16 10 C 0.19 4.60 6.66 -38.58 -0.26 4.35 16 11 C -0.24 -4.87 9.16 -39.44 -0.36 -5.23 16 12 C -0.04 -0.70 10.03 -39.53 -0.40 -1.09 16 13 C -0.23 -3.72 10.02 -39.61 -0.40 -4.12 16 14 C -0.01 -0.25 9.61 -39.18 -0.38 -0.63 16 15 C -0.22 -4.69 5.89 -104.83 -0.62 -5.31 16 16 C 0.49 11.07 7.75 34.45 0.27 11.33 16 17 O -0.46 -12.24 14.64 -26.60 -0.39 -12.63 16 18 O -0.30 -5.57 9.28 -25.08 -0.23 -5.80 16 19 C 0.12 1.99 5.19 -39.24 -0.20 1.79 16 20 C -0.11 -1.59 9.98 -39.42 -0.39 -1.98 16 21 C -0.09 -1.14 10.05 -39.48 -0.40 -1.54 16 22 C 0.02 0.37 7.15 -39.08 -0.28 0.09 16 23 C 0.05 0.77 7.15 -39.09 -0.28 0.49 16 24 C -0.10 -1.77 9.48 -39.32 -0.37 -2.14 16 25 O -0.31 -4.55 11.40 -45.72 -0.52 -5.07 16 26 C 0.21 2.22 8.89 101.05 0.90 3.12 16 27 O -0.31 -4.12 11.41 -45.99 -0.52 -4.64 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.14 2.69 5.64 -52.48 -0.30 2.40 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.13 1.84 7.61 -52.49 -0.40 1.44 16 33 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.14 2.45 8.06 -52.49 -0.42 2.02 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -34.21 334.44 -7.09 -41.30 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.06 Total: 4.82 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.97 Total: -10.52 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.76 Total: -23.74 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.83 Total: -31.84 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.21 -7.09 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919971279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.268 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds