Wall clock time and date at job start Tue Mar 31 2020 14:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99655 * 2 1 4 4 H 1.48502 * 109.46859 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46672 * 120.00494 * 3 2 1 6 6 H 1.48494 * 109.47163 * 240.00048 * 3 2 1 7 7 C 1.38807 * 120.00467 * 180.27988 * 2 1 3 8 8 H 1.07996 * 120.00082 * 208.44474 * 7 2 1 9 9 N 1.36945 * 119.99963 * 28.44676 * 7 2 1 10 10 C 1.47423 * 125.64659 * 19.18181 * 9 7 2 11 11 C 1.55122 * 104.72063 * 155.81925 * 10 9 7 12 12 C 1.55159 * 101.48670 * 37.29860 * 11 10 9 13 13 H 1.08995 * 110.71939 * 82.69622 * 12 11 10 14 14 N 1.46499 * 110.72111 * 205.96753 * 12 11 10 15 15 C 1.34776 * 120.00101 * 199.97366 * 14 12 11 16 16 O 1.21562 * 119.99845 * 0.02562 * 15 14 12 17 17 C 1.47785 * 120.00256 * 179.97438 * 15 14 12 18 18 C 1.39630 * 120.12191 * 359.73238 * 17 15 14 19 19 C 1.37891 * 119.89102 * 179.74175 * 18 17 15 20 20 C 1.38504 * 120.14096 * 0.50713 * 19 18 17 21 21 Cl 1.73609 * 119.87194 * 179.74408 * 20 19 18 22 22 C 1.38594 * 120.25761 * 359.76406 * 20 19 18 23 23 Cl 1.73607 * 119.94846 * 179.97438 * 22 20 19 24 24 C 1.38033 * 120.10846 * 359.97438 * 22 20 19 25 25 C 1.47015 * 125.65076 * 199.49730 * 9 7 2 26 26 H 0.97002 * 119.99472 * 185.66046 * 1 2 3 27 27 H 1.08995 * 110.37013 * 274.75635 * 10 9 7 28 28 H 1.09007 * 110.36625 * 37.07459 * 10 9 7 29 29 H 1.09008 * 111.19573 * 279.19274 * 11 10 9 30 30 H 1.09009 * 110.93967 * 155.29208 * 11 10 9 31 31 H 0.97006 * 120.00047 * 19.97264 * 14 12 11 32 32 H 1.08003 * 120.05894 * 359.96683 * 18 17 15 33 33 H 1.07994 * 119.92533 * 180.24798 * 19 18 17 34 34 H 1.07996 * 120.07595 * 180.02562 * 24 22 20 35 35 H 1.09005 * 109.88112 * 300.43949 * 25 9 7 36 36 H 1.09002 * 109.88578 * 61.60017 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2125 7 6 2.0103 -1.2020 -0.0059 8 1 2.9925 -1.2606 0.4393 9 7 1.4497 -2.3137 -0.5762 10 6 0.3396 -2.3145 -1.5463 11 6 0.4961 -3.6479 -2.3234 12 6 0.9626 -4.6086 -1.1978 13 1 0.1096 -4.9809 -0.6305 14 7 1.7417 -5.7180 -1.7531 15 6 1.8978 -6.8533 -1.0437 16 8 1.3917 -6.9569 0.0567 17 6 2.6832 -7.9727 -1.6040 18 6 3.2601 -7.8591 -2.8705 19 6 3.9965 -8.9045 -3.3865 20 6 4.1561 -10.0702 -2.6557 21 17 5.0791 -11.3845 -3.3149 22 6 3.5814 -10.1916 -1.4004 23 17 3.7859 -11.6566 -0.4916 24 6 2.8466 -9.1496 -0.8715 25 6 1.8509 -3.7042 -0.3177 26 1 -0.4849 -0.8360 0.0829 27 1 -0.6182 -2.2856 -1.0268 28 1 0.4291 -1.4670 -2.2260 29 1 1.2530 -3.5630 -3.1032 30 1 -0.4579 -3.9696 -2.7412 31 1 2.1453 -5.6355 -2.6313 32 1 3.1329 -6.9525 -3.4436 33 1 4.4463 -8.8156 -4.3643 34 1 2.3994 -9.2447 0.1069 35 1 2.8990 -3.8430 -0.5829 36 1 1.6976 -3.9449 0.7343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016080029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:23 Heat of formation + Delta-G solvation = 0.907746 kcal Electronic energy + Delta-G solvation = -22316.522821 eV Core-core repulsion = 18659.912016 eV Total energy + Delta-G solvation = -3656.610804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.60254 -39.06853 -37.50959 -36.99409 -36.82603 -34.41037 -32.35542 -31.55965 -31.07610 -29.17037 -27.36845 -24.76128 -23.92456 -23.36097 -21.06617 -20.71793 -19.96799 -18.55780 -17.53504 -17.06030 -16.59743 -15.88948 -15.67307 -15.13944 -14.58741 -14.43454 -14.40443 -14.13898 -13.82094 -13.26604 -13.09232 -12.96939 -12.40258 -12.33847 -12.30825 -11.92031 -11.72237 -11.50375 -11.35562 -11.29327 -10.88684 -10.73299 -10.57757 -10.22070 -10.07802 -10.01518 -9.58363 -9.52936 -9.28021 -8.98601 -8.41307 -6.96738 -6.13000 -3.19359 0.09060 0.55133 1.33278 1.68799 2.38521 3.00100 3.31304 3.49235 3.52091 3.70589 4.07346 4.32122 4.40093 4.58006 4.60444 4.66733 5.02004 5.15800 5.18512 5.34812 5.36203 5.44583 5.52134 5.60608 5.62730 5.88915 5.93887 6.04820 6.19184 6.28096 6.62745 6.78074 6.84952 6.95291 7.42777 7.78359 8.09327 8.46425 8.98748 9.77959 10.32624 11.18991 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.002288 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.035349 B =12237.300035 C =12445.211308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.024 4.024 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.338 4.338 8 H 0.064 0.936 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.141 4.141 12 C 0.132 3.868 13 H 0.096 0.904 14 N -0.708 5.708 15 C 0.555 3.445 16 O -0.526 6.526 17 C -0.110 4.110 18 C -0.071 4.071 19 C -0.104 4.104 20 C -0.013 4.013 21 Cl -0.044 7.044 22 C -0.039 4.039 23 Cl -0.042 7.042 24 C -0.041 4.041 25 C 0.127 3.873 26 H 0.269 0.731 27 H 0.031 0.969 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.028 0.972 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.401 -22.425 -10.136 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.226 4.226 3 Si 0.895 3.105 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.466 4.466 8 H 0.082 0.918 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.180 4.180 12 C 0.027 3.973 13 H 0.114 0.886 14 N -0.359 5.359 15 C 0.341 3.659 16 O -0.403 6.403 17 C -0.114 4.114 18 C -0.090 4.090 19 C -0.123 4.123 20 C -0.041 4.041 21 Cl -0.015 7.015 22 C -0.067 4.067 23 Cl -0.013 7.013 24 C -0.061 4.061 25 C 0.000 4.000 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.234 0.766 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.046 0.954 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.000 -20.989 -9.326 24.011 hybrid contribution 0.582 -1.939 -0.255 2.040 sum 7.582 -22.928 -9.581 25.980 Atomic orbital electron populations 1.70792 1.06670 1.30195 1.47737 1.25802 0.96411 1.01196 0.99232 0.83522 0.74827 0.75977 0.76218 1.21042 1.21959 1.22083 1.19720 0.99688 0.88147 1.39033 0.91830 1.44524 1.40357 1.00285 1.47670 1.21559 0.92030 0.93540 0.90943 1.23156 1.00757 0.97080 0.96963 1.22135 0.94197 0.85092 0.95838 0.88631 1.45957 1.54109 1.14850 1.20949 1.18021 0.80506 0.82195 0.85173 1.90825 1.48367 1.81569 1.19582 1.20102 1.00824 0.95156 0.95308 1.21437 0.94549 0.98801 0.94173 1.21002 0.99595 0.90961 1.00738 1.21028 0.97965 0.91687 0.93383 1.98408 1.71419 1.46526 1.85115 1.20661 1.02409 0.90926 0.92718 1.98407 1.96111 1.33381 1.73361 1.21174 0.94576 0.89680 1.00648 1.21658 0.95980 0.85701 0.96631 0.92019 0.95153 0.92692 0.91140 0.91095 0.76648 0.83775 0.83192 0.82482 0.95446 0.95222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.43 13.00 55.49 0.72 -26.71 16 2 C -0.02 -0.69 5.09 -17.43 -0.09 -0.78 16 3 Si 1.07 25.16 30.01 -169.99 -5.10 20.06 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.34 -9.58 10.00 -15.06 -0.15 -9.73 16 8 H 0.06 1.81 7.97 -52.49 -0.42 1.39 16 9 N -0.60 -15.13 3.26 -169.95 -0.55 -15.69 16 10 C 0.15 3.22 5.38 -2.41 -0.01 3.21 16 11 C -0.14 -2.26 6.71 -24.47 -0.16 -2.42 16 12 C 0.13 2.21 3.23 -66.10 -0.21 2.00 16 13 H 0.10 1.72 7.70 -51.93 -0.40 1.32 16 14 N -0.71 -9.19 5.08 -52.99 -0.27 -9.46 16 15 C 0.56 7.72 7.77 -12.36 -0.10 7.62 16 16 O -0.53 -9.41 16.08 5.31 0.09 -9.33 16 17 C -0.11 -1.17 5.87 -104.97 -0.62 -1.79 16 18 C -0.07 -0.54 9.54 -39.19 -0.37 -0.92 16 19 C -0.10 -0.74 9.81 -39.61 -0.39 -1.12 16 20 C -0.01 -0.11 6.33 -39.35 -0.25 -0.36 16 21 Cl -0.04 -0.35 27.94 -51.86 -1.45 -1.80 16 22 C -0.04 -0.38 6.32 -39.53 -0.25 -0.63 16 23 Cl -0.04 -0.39 27.94 -51.86 -1.45 -1.84 16 24 C -0.04 -0.43 9.37 -39.15 -0.37 -0.80 16 25 C 0.13 2.71 6.99 -3.07 -0.02 2.69 16 26 H 0.27 8.09 6.19 -40.82 -0.25 7.83 16 27 H 0.03 0.72 6.81 -51.93 -0.35 0.37 16 28 H 0.05 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.07 1.02 8.00 -51.92 -0.42 0.60 16 30 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.40 3.83 6.55 -40.82 -0.27 3.57 16 32 H 0.14 0.75 6.40 -52.48 -0.34 0.41 16 33 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 34 H 0.16 1.72 7.65 -52.49 -0.40 1.32 16 35 H 0.03 0.58 8.03 -51.93 -0.42 0.17 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -32.97 334.75 -9.71 -42.68 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.74 Total: 0.06 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.99 Total: -3.03 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.10 Total: -51.86 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.10 Total: 20.06 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -2.90 Total: -3.64 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.97 -9.71 -42.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016080029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.587 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds