Wall clock time and date at job start Tue Mar 31 2020 14:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99655 * 2 1 4 4 H 1.48502 * 109.46859 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46672 * 120.00494 * 3 2 1 6 6 H 1.48494 * 109.47163 * 240.00048 * 3 2 1 7 7 C 1.38807 * 120.00467 * 180.27988 * 2 1 3 8 8 H 1.07996 * 120.00082 * 208.44474 * 7 2 1 9 9 N 1.36945 * 119.99963 * 28.44676 * 7 2 1 10 10 C 1.47423 * 125.64659 * 19.18181 * 9 7 2 11 11 C 1.55122 * 104.72063 * 155.81925 * 10 9 7 12 12 C 1.55159 * 101.48670 * 37.29860 * 11 10 9 13 13 H 1.08995 * 110.71939 * 82.69622 * 12 11 10 14 14 N 1.46499 * 110.72111 * 205.96753 * 12 11 10 15 15 C 1.34776 * 120.00101 * 199.97366 * 14 12 11 16 16 O 1.21562 * 119.99845 * 0.02562 * 15 14 12 17 17 C 1.47785 * 120.00256 * 179.97438 * 15 14 12 18 18 C 1.39630 * 120.12191 * 359.73238 * 17 15 14 19 19 C 1.37891 * 119.89102 * 179.74175 * 18 17 15 20 20 C 1.38504 * 120.14096 * 0.50713 * 19 18 17 21 21 Cl 1.73609 * 119.87194 * 179.74408 * 20 19 18 22 22 C 1.38594 * 120.25761 * 359.76406 * 20 19 18 23 23 Cl 1.73607 * 119.94846 * 179.97438 * 22 20 19 24 24 C 1.38033 * 120.10846 * 359.97438 * 22 20 19 25 25 C 1.47015 * 125.65076 * 199.49730 * 9 7 2 26 26 H 0.97002 * 119.99472 * 185.66046 * 1 2 3 27 27 H 1.08995 * 110.37013 * 274.75635 * 10 9 7 28 28 H 1.09007 * 110.36625 * 37.07459 * 10 9 7 29 29 H 1.09008 * 111.19573 * 279.19274 * 11 10 9 30 30 H 1.09009 * 110.93967 * 155.29208 * 11 10 9 31 31 H 0.97006 * 120.00047 * 19.97264 * 14 12 11 32 32 H 1.08003 * 120.05894 * 359.96683 * 18 17 15 33 33 H 1.07994 * 119.92533 * 180.24798 * 19 18 17 34 34 H 1.07996 * 120.07595 * 180.02562 * 24 22 20 35 35 H 1.09005 * 109.88112 * 300.43949 * 25 9 7 36 36 H 1.09002 * 109.88578 * 61.60017 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2125 7 6 2.0103 -1.2020 -0.0059 8 1 2.9925 -1.2606 0.4393 9 7 1.4497 -2.3137 -0.5762 10 6 0.3396 -2.3145 -1.5463 11 6 0.4961 -3.6479 -2.3234 12 6 0.9626 -4.6086 -1.1978 13 1 0.1096 -4.9809 -0.6305 14 7 1.7417 -5.7180 -1.7531 15 6 1.8978 -6.8533 -1.0437 16 8 1.3917 -6.9569 0.0567 17 6 2.6832 -7.9727 -1.6040 18 6 3.2601 -7.8591 -2.8705 19 6 3.9965 -8.9045 -3.3865 20 6 4.1561 -10.0702 -2.6557 21 17 5.0791 -11.3845 -3.3149 22 6 3.5814 -10.1916 -1.4004 23 17 3.7859 -11.6566 -0.4916 24 6 2.8466 -9.1496 -0.8715 25 6 1.8509 -3.7042 -0.3177 26 1 -0.4849 -0.8360 0.0829 27 1 -0.6182 -2.2856 -1.0268 28 1 0.4291 -1.4670 -2.2260 29 1 1.2530 -3.5630 -3.1032 30 1 -0.4579 -3.9696 -2.7412 31 1 2.1453 -5.6355 -2.6313 32 1 3.1329 -6.9525 -3.4436 33 1 4.4463 -8.8156 -4.3643 34 1 2.3994 -9.2447 0.1069 35 1 2.8990 -3.8430 -0.5829 36 1 1.6976 -3.9449 0.7343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016080029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:23 Heat of formation + Delta-G solvation = -19.731612 kcal Electronic energy + Delta-G solvation = -22317.417810 eV Core-core repulsion = 18659.912016 eV Total energy + Delta-G solvation = -3657.505794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.58546 -40.07878 -38.98839 -37.67808 -37.57041 -35.93397 -34.04173 -32.29855 -32.04444 -30.88805 -28.95578 -26.46550 -25.10734 -24.05856 -22.45424 -22.13362 -21.45594 -19.69851 -19.31390 -17.98861 -17.60653 -16.93298 -16.60312 -16.30957 -16.06263 -15.80971 -15.53053 -15.15654 -15.05846 -15.02903 -14.58984 -14.06963 -13.69679 -13.54690 -13.01851 -13.01405 -12.72705 -12.62912 -12.57242 -12.49966 -12.43595 -12.20718 -12.02395 -11.89738 -11.76983 -11.60833 -11.24487 -10.58785 -10.32747 -10.17943 -9.91928 -9.05934 -8.35887 -5.39968 -0.66160 -0.11964 0.65189 1.00010 1.48984 1.58346 1.65630 1.85300 1.90230 2.44986 2.63797 3.15189 3.35430 3.43072 3.58140 3.61288 3.81456 3.87725 3.89978 3.98357 4.11276 4.37113 4.50968 4.55601 4.64556 4.77845 4.81483 4.87904 4.91035 4.95039 5.02155 5.22453 5.28030 5.40148 5.65498 6.28521 6.38794 6.85735 7.04782 7.66076 8.23176 8.94509 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.002288 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.035349 B =12237.300035 C =12445.211308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.075 4.075 3 Si 1.118 2.882 4 H -0.290 1.290 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.353 4.353 8 H 0.055 0.945 9 N -0.622 5.622 10 C 0.142 3.858 11 C -0.115 4.115 12 C 0.150 3.850 13 H 0.082 0.918 14 N -0.692 5.692 15 C 0.557 3.443 16 O -0.575 6.575 17 C -0.124 4.124 18 C -0.054 4.054 19 C -0.093 4.093 20 C -0.013 4.013 21 Cl -0.038 7.038 22 C -0.049 4.049 23 Cl -0.046 7.046 24 C -0.051 4.051 25 C 0.125 3.875 26 H 0.255 0.745 27 H 0.006 0.994 28 H 0.033 0.967 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.419 0.581 32 H 0.177 0.823 33 H 0.184 0.816 34 H 0.143 0.857 35 H 0.034 0.966 36 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 -23.113 -13.086 28.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.271 4.271 3 Si 0.942 3.058 4 H -0.216 1.216 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.481 4.481 8 H 0.072 0.928 9 N -0.349 5.349 10 C 0.017 3.983 11 C -0.153 4.153 12 C 0.044 3.956 13 H 0.100 0.900 14 N -0.344 5.344 15 C 0.345 3.655 16 O -0.455 6.455 17 C -0.128 4.128 18 C -0.072 4.072 19 C -0.111 4.111 20 C -0.041 4.041 21 Cl -0.008 7.008 22 C -0.076 4.076 23 Cl -0.016 7.016 24 C -0.071 4.071 25 C -0.001 4.001 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.259 0.741 32 H 0.194 0.806 33 H 0.202 0.798 34 H 0.160 0.840 35 H 0.052 0.948 36 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 8.572 -21.723 -12.321 26.404 hybrid contribution 0.151 -1.829 0.692 1.961 sum 8.723 -23.552 -11.629 27.677 Atomic orbital electron populations 1.70913 1.07596 1.29381 1.50253 1.27258 0.96486 1.04606 0.98741 0.82828 0.73857 0.71719 0.77426 1.21556 1.20393 1.20082 1.19981 0.99468 0.89702 1.38959 0.92750 1.44807 1.40766 1.01033 1.48332 1.21553 0.89977 0.96366 0.90422 1.23027 1.03508 0.92532 0.96260 1.21660 0.93046 0.85498 0.95405 0.90031 1.45650 1.53640 1.13455 1.21650 1.18503 0.79804 0.82788 0.84434 1.90809 1.50385 1.82469 1.21843 1.19825 1.02138 0.93934 0.96886 1.21742 0.92826 1.00028 0.92646 1.21380 0.98489 0.89650 1.01618 1.21247 0.97446 0.92443 0.93002 1.98417 1.71146 1.46432 1.84843 1.20664 1.02947 0.90666 0.93360 1.98403 1.96138 1.33468 1.73636 1.21083 0.95235 0.90381 1.00429 1.21737 0.97240 0.85131 0.95982 0.93529 0.97590 0.94830 0.88265 0.87663 0.74136 0.80556 0.79827 0.83966 0.94849 0.98538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.89 13.00 21.65 0.28 -57.61 16 2 C -0.07 -4.30 5.09 84.86 0.43 -3.87 16 3 Si 1.12 50.92 30.01 68.60 2.06 52.97 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.35 -20.37 10.00 84.03 0.84 -19.53 16 8 H 0.05 3.16 7.97 -2.91 -0.02 3.14 16 9 N -0.62 -31.92 3.26 -691.59 -2.26 -34.17 16 10 C 0.14 6.37 5.38 86.93 0.47 6.83 16 11 C -0.11 -3.39 6.71 32.06 0.21 -3.18 16 12 C 0.15 4.87 3.23 46.18 0.15 5.02 16 13 H 0.08 2.94 7.70 -2.39 -0.02 2.92 16 14 N -0.69 -16.30 5.08 -439.85 -2.23 -18.54 16 15 C 0.56 14.92 7.77 86.77 0.67 15.59 16 16 O -0.57 -21.05 16.08 -3.91 -0.06 -21.11 16 17 C -0.12 -2.42 5.87 -20.09 -0.12 -2.54 16 18 C -0.05 -0.61 9.54 22.52 0.21 -0.40 16 19 C -0.09 -0.92 9.81 22.25 0.22 -0.71 16 20 C -0.01 -0.19 6.33 22.42 0.14 -0.05 16 21 Cl -0.04 -0.52 27.94 -2.72 -0.08 -0.59 16 22 C -0.05 -0.88 6.32 22.31 0.14 -0.74 16 23 Cl -0.05 -0.83 27.94 -2.72 -0.08 -0.90 16 24 C -0.05 -1.07 9.37 22.55 0.21 -0.85 16 25 C 0.13 5.44 6.99 86.73 0.61 6.05 16 26 H 0.25 15.98 6.19 -92.71 -0.57 15.41 16 27 H 0.01 0.31 6.81 -2.39 -0.02 0.29 16 28 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 29 H 0.10 2.42 8.00 -2.38 -0.02 2.40 16 30 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.42 6.24 6.55 -92.70 -0.61 5.64 16 32 H 0.18 0.81 6.40 -2.91 -0.02 0.80 16 33 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.14 3.29 7.65 -2.91 -0.02 3.27 16 35 H 0.03 1.40 8.03 -2.38 -0.02 1.38 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: -1.00 -75.85 334.75 2.55 -73.30 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.72 Total: 5.03 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 4.19 Total: 1.63 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -4.21 Total: -110.32 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.06 Total: -21.11 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.06 Total: 52.97 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.15 Total: -1.49 kcal Total: -75.85 2.55 -73.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016080029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.568 kcal (2) G-P(sol) polarization free energy of solvation -75.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds