Wall clock time and date at job start Tue Mar 31 2020 14:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99655 * 2 1 4 4 H 1.48502 * 109.46859 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46672 * 120.00494 * 3 2 1 6 6 H 1.48494 * 109.47163 * 240.00048 * 3 2 1 7 7 C 1.38807 * 120.00467 * 180.27988 * 2 1 3 8 8 H 1.07996 * 120.00082 * 208.44474 * 7 2 1 9 9 N 1.36945 * 119.99963 * 28.44676 * 7 2 1 10 10 C 1.47423 * 125.64659 * 19.18181 * 9 7 2 11 11 C 1.55122 * 104.72063 * 155.81925 * 10 9 7 12 12 C 1.55159 * 101.48670 * 37.29860 * 11 10 9 13 13 H 1.08995 * 110.71939 * 82.69622 * 12 11 10 14 14 N 1.46499 * 110.72111 * 205.96753 * 12 11 10 15 15 C 1.34776 * 120.00101 * 199.97366 * 14 12 11 16 16 O 1.21562 * 119.99845 * 0.02562 * 15 14 12 17 17 C 1.47768 * 120.00181 * 179.97438 * 15 14 12 18 18 C 1.39618 * 120.14747 * 359.72345 * 17 15 14 19 19 C 1.38020 * 119.85109 * 179.74482 * 18 17 15 20 20 Cl 1.73599 * 119.92602 * 180.29915 * 19 18 17 21 21 C 1.38531 * 120.15337 * 0.55447 * 19 18 17 22 22 C 1.38252 * 120.30104 * 359.70029 * 21 19 18 23 23 C 1.38153 * 120.15110 * 0.02562 * 22 21 19 24 24 Cl 1.73599 * 120.08361 * 180.02562 * 23 22 21 25 25 C 1.47015 * 125.65076 * 199.49730 * 9 7 2 26 26 H 0.97002 * 119.99472 * 185.66046 * 1 2 3 27 27 H 1.08995 * 110.37013 * 274.75635 * 10 9 7 28 28 H 1.09007 * 110.36625 * 37.07459 * 10 9 7 29 29 H 1.09008 * 111.19573 * 279.19274 * 11 10 9 30 30 H 1.09009 * 110.93967 * 155.29208 * 11 10 9 31 31 H 0.97006 * 120.00047 * 19.97264 * 14 12 11 32 32 H 1.08000 * 120.07865 * 0.02562 * 18 17 15 33 33 H 1.07996 * 119.84943 * 179.71739 * 21 19 18 34 34 H 1.08009 * 119.92713 * 180.02562 * 22 21 19 35 35 H 1.09005 * 109.88112 * 300.43949 * 25 9 7 36 36 H 1.09002 * 109.88578 * 61.60017 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2125 7 6 2.0103 -1.2020 -0.0059 8 1 2.9925 -1.2606 0.4393 9 7 1.4497 -2.3137 -0.5762 10 6 0.3396 -2.3145 -1.5463 11 6 0.4961 -3.6479 -2.3234 12 6 0.9626 -4.6086 -1.1978 13 1 0.1096 -4.9809 -0.6305 14 7 1.7417 -5.7180 -1.7531 15 6 1.8978 -6.8533 -1.0437 16 8 1.3917 -6.9569 0.0567 17 6 2.6832 -7.9726 -1.6040 18 6 3.2601 -7.8596 -2.8704 19 6 3.9968 -8.9068 -3.3856 20 17 4.7215 -8.7654 -4.9567 21 6 4.1550 -10.0725 -2.6541 22 6 3.5821 -10.1933 -1.4017 23 6 2.8468 -9.1508 -0.8715 24 17 2.1287 -9.3040 0.7016 25 6 1.8509 -3.7042 -0.3177 26 1 -0.4849 -0.8360 0.0829 27 1 -0.6182 -2.2856 -1.0268 28 1 0.4291 -1.4670 -2.2260 29 1 1.2530 -3.5630 -3.1032 30 1 -0.4579 -3.9696 -2.7412 31 1 2.1453 -5.6355 -2.6313 32 1 3.1339 -6.9531 -3.4437 33 1 4.7287 -10.8906 -3.0639 34 1 3.7096 -11.1048 -0.8364 35 1 2.8990 -3.8430 -0.5829 36 1 1.6976 -3.9449 0.7343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016089308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:39 Heat of formation + Delta-G solvation = 10.518210 kcal Electronic energy + Delta-G solvation = -22660.267311 eV Core-core repulsion = 19004.073247 eV Total energy + Delta-G solvation = -3656.194063 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54469 -38.95911 -37.44554 -36.98925 -36.46022 -34.32160 -32.50451 -31.42261 -30.91700 -29.13640 -27.33632 -24.77588 -24.01808 -23.09422 -21.06246 -20.65671 -19.91802 -18.50806 -17.48579 -16.91627 -16.49046 -15.80413 -15.69080 -15.11535 -14.72497 -14.49423 -14.21235 -13.82238 -13.73721 -13.22060 -13.02427 -12.69962 -12.68153 -12.45287 -12.28720 -11.76746 -11.56383 -11.35160 -11.27540 -11.15057 -10.80359 -10.69928 -10.54396 -10.17447 -10.01155 -9.69620 -9.61153 -9.55226 -9.08101 -8.88729 -8.38089 -6.93212 -6.10076 -3.16126 0.19758 0.49296 1.53155 1.88246 2.49104 3.04472 3.32952 3.51137 3.54241 3.72608 4.09145 4.16830 4.54374 4.59475 4.64413 4.82056 5.03840 5.15556 5.20412 5.24012 5.38838 5.49726 5.55984 5.57605 5.66026 5.91546 5.94277 6.09102 6.23987 6.34930 6.67583 6.83767 6.88971 6.99069 7.49877 7.81753 8.18299 8.49491 9.02031 9.81139 10.36207 11.21922 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.002989 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.695515 B = 9365.612290 C =10434.910414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.024 4.024 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.338 4.338 8 H 0.064 0.936 9 N -0.601 5.601 10 C 0.146 3.854 11 C -0.141 4.141 12 C 0.134 3.866 13 H 0.096 0.904 14 N -0.710 5.710 15 C 0.550 3.450 16 O -0.507 6.507 17 C -0.110 4.110 18 C -0.067 4.067 19 C -0.042 4.042 20 Cl -0.056 7.056 21 C -0.077 4.077 22 C -0.108 4.108 23 C 0.015 3.985 24 Cl -0.018 7.018 25 C 0.128 3.872 26 H 0.269 0.731 27 H 0.030 0.970 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.396 0.604 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.027 0.973 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 -23.025 -9.539 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.465 4.465 8 H 0.081 0.919 9 N -0.328 5.328 10 C 0.020 3.980 11 C -0.180 4.180 12 C 0.030 3.970 13 H 0.114 0.886 14 N -0.361 5.361 15 C 0.335 3.665 16 O -0.383 6.383 17 C -0.115 4.115 18 C -0.087 4.087 19 C -0.069 4.069 20 Cl -0.027 7.027 21 C -0.096 4.096 22 C -0.127 4.127 23 C -0.014 4.014 24 Cl 0.011 6.989 25 C 0.001 3.999 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.231 0.769 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.045 0.955 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.846 -21.335 -8.733 24.049 hybrid contribution 0.520 -1.684 -0.356 1.798 sum 7.367 -23.019 -9.089 25.821 Atomic orbital electron populations 1.70788 1.06663 1.30189 1.47793 1.25793 0.96413 1.01169 0.99274 0.83525 0.74825 0.75993 0.76209 1.21057 1.21977 1.22092 1.19723 0.99680 0.88178 1.38964 0.91854 1.44521 1.40345 1.00315 1.47663 1.21552 0.92010 0.93535 0.90927 1.23156 1.00730 0.97099 0.97005 1.22100 0.94155 0.85050 0.95740 0.88647 1.45970 1.54348 1.14896 1.20923 1.17930 0.80937 0.82172 0.85440 1.90902 1.47436 1.81063 1.18848 1.19860 1.01806 0.95133 0.94652 1.21215 0.94926 0.98524 0.93994 1.20850 1.00518 0.96280 0.89252 1.98404 1.81720 1.98039 1.24518 1.21201 0.98400 0.96623 0.93393 1.21059 0.97378 0.98709 0.95556 1.21163 0.96663 0.94082 0.89462 1.98449 1.81050 1.97420 1.21938 1.21654 0.95973 0.85648 0.96632 0.92023 0.95187 0.92745 0.91182 0.91138 0.76856 0.83627 0.83529 0.83265 0.95501 0.95229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.74 13.00 55.49 0.72 -27.01 16 2 C -0.02 -0.70 5.09 -17.43 -0.09 -0.79 16 3 Si 1.07 25.48 30.01 -169.99 -5.10 20.38 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.34 -9.71 10.00 -15.06 -0.15 -9.86 16 8 H 0.06 1.83 7.97 -52.49 -0.42 1.41 16 9 N -0.60 -15.43 3.26 -169.95 -0.55 -15.99 16 10 C 0.15 3.31 5.38 -2.41 -0.01 3.29 16 11 C -0.14 -2.36 6.71 -24.47 -0.16 -2.52 16 12 C 0.13 2.33 3.23 -66.10 -0.21 2.12 16 13 H 0.10 1.77 7.70 -51.93 -0.40 1.37 16 14 N -0.71 -9.89 5.08 -53.00 -0.27 -10.16 16 15 C 0.55 8.12 7.76 -12.36 -0.10 8.02 16 16 O -0.51 -9.18 13.70 5.31 0.07 -9.11 16 17 C -0.11 -1.28 5.88 -104.94 -0.62 -1.90 16 18 C -0.07 -0.62 9.32 -39.15 -0.36 -0.98 16 19 C -0.04 -0.34 6.31 -39.55 -0.25 -0.59 16 20 Cl -0.06 -0.43 28.95 -51.86 -1.50 -1.93 16 21 C -0.08 -0.53 9.82 -39.47 -0.39 -0.92 16 22 C -0.11 -0.84 9.82 -39.61 -0.39 -1.23 16 23 C 0.01 0.16 6.35 -39.07 -0.25 -0.09 16 24 Cl -0.02 -0.23 26.02 -51.86 -1.35 -1.58 16 25 C 0.13 2.80 6.99 -3.07 -0.02 2.78 16 26 H 0.27 8.18 6.19 -40.82 -0.25 7.93 16 27 H 0.03 0.73 6.81 -51.93 -0.35 0.38 16 28 H 0.05 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.07 1.07 8.00 -51.92 -0.42 0.65 16 30 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.40 4.33 6.55 -40.82 -0.27 4.07 16 32 H 0.15 1.10 6.41 -52.49 -0.34 0.76 16 33 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -33.36 332.13 -9.75 -43.11 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.77 Total: -0.05 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.00 Total: -2.66 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.10 Total: -53.16 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.10 Total: 20.38 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -2.85 Total: -3.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.36 -9.75 -43.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016089308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.623 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds