Wall clock time and date at job start Tue Mar 31 2020 14:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86809 * 119.99655 * 2 1 4 4 H 1.48502 * 109.46859 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46672 * 120.00494 * 3 2 1 6 6 H 1.48494 * 109.47163 * 240.00048 * 3 2 1 7 7 C 1.38807 * 120.00467 * 180.27988 * 2 1 3 8 8 H 1.07996 * 120.00082 * 208.44474 * 7 2 1 9 9 N 1.36945 * 119.99963 * 28.44676 * 7 2 1 10 10 C 1.47423 * 125.64659 * 19.18181 * 9 7 2 11 11 C 1.55122 * 104.72063 * 155.81925 * 10 9 7 12 12 C 1.55159 * 101.48670 * 37.29860 * 11 10 9 13 13 H 1.08995 * 110.71939 * 82.69622 * 12 11 10 14 14 N 1.46499 * 110.72111 * 205.96753 * 12 11 10 15 15 C 1.34776 * 120.00101 * 199.97366 * 14 12 11 16 16 O 1.21562 * 119.99845 * 0.02562 * 15 14 12 17 17 C 1.47768 * 120.00181 * 179.97438 * 15 14 12 18 18 C 1.39618 * 120.14747 * 359.72345 * 17 15 14 19 19 C 1.38020 * 119.85109 * 179.74482 * 18 17 15 20 20 Cl 1.73599 * 119.92602 * 180.29915 * 19 18 17 21 21 C 1.38531 * 120.15337 * 0.55447 * 19 18 17 22 22 C 1.38252 * 120.30104 * 359.70029 * 21 19 18 23 23 C 1.38153 * 120.15110 * 0.02562 * 22 21 19 24 24 Cl 1.73599 * 120.08361 * 180.02562 * 23 22 21 25 25 C 1.47015 * 125.65076 * 199.49730 * 9 7 2 26 26 H 0.97002 * 119.99472 * 185.66046 * 1 2 3 27 27 H 1.08995 * 110.37013 * 274.75635 * 10 9 7 28 28 H 1.09007 * 110.36625 * 37.07459 * 10 9 7 29 29 H 1.09008 * 111.19573 * 279.19274 * 11 10 9 30 30 H 1.09009 * 110.93967 * 155.29208 * 11 10 9 31 31 H 0.97006 * 120.00047 * 19.97264 * 14 12 11 32 32 H 1.08000 * 120.07865 * 0.02562 * 18 17 15 33 33 H 1.07996 * 119.84943 * 179.71739 * 21 19 18 34 34 H 1.08009 * 119.92713 * 180.02562 * 22 21 19 35 35 H 1.09005 * 109.88112 * 300.43949 * 25 9 7 36 36 H 1.09002 * 109.88578 * 61.60017 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2125 7 6 2.0103 -1.2020 -0.0059 8 1 2.9925 -1.2606 0.4393 9 7 1.4497 -2.3137 -0.5762 10 6 0.3396 -2.3145 -1.5463 11 6 0.4961 -3.6479 -2.3234 12 6 0.9626 -4.6086 -1.1978 13 1 0.1096 -4.9809 -0.6305 14 7 1.7417 -5.7180 -1.7531 15 6 1.8978 -6.8533 -1.0437 16 8 1.3917 -6.9569 0.0567 17 6 2.6832 -7.9726 -1.6040 18 6 3.2601 -7.8596 -2.8704 19 6 3.9968 -8.9068 -3.3856 20 17 4.7215 -8.7654 -4.9567 21 6 4.1550 -10.0725 -2.6541 22 6 3.5821 -10.1933 -1.4017 23 6 2.8468 -9.1508 -0.8715 24 17 2.1287 -9.3040 0.7016 25 6 1.8509 -3.7042 -0.3177 26 1 -0.4849 -0.8360 0.0829 27 1 -0.6182 -2.2856 -1.0268 28 1 0.4291 -1.4670 -2.2260 29 1 1.2530 -3.5630 -3.1032 30 1 -0.4579 -3.9696 -2.7412 31 1 2.1453 -5.6355 -2.6313 32 1 3.1339 -6.9531 -3.4437 33 1 4.7287 -10.8906 -3.0639 34 1 3.7096 -11.1048 -0.8364 35 1 2.8990 -3.8430 -0.5829 36 1 1.6976 -3.9449 0.7343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016089308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:39 Heat of formation + Delta-G solvation = -10.419963 kcal Electronic energy + Delta-G solvation = -22661.175258 eV Core-core repulsion = 19004.073247 eV Total energy + Delta-G solvation = -3657.102010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.54715 -40.02501 -38.92187 -37.77302 -37.22570 -35.88183 -34.08858 -32.53950 -31.62358 -30.92854 -28.98185 -26.47203 -25.20787 -23.86048 -22.46833 -22.12945 -21.45728 -19.70685 -19.30114 -17.90354 -17.42754 -16.90456 -16.64244 -16.29597 -16.05350 -15.80542 -15.59699 -15.23423 -15.13836 -14.68032 -14.46801 -14.06422 -13.57499 -13.41680 -13.36175 -13.10820 -12.72346 -12.64253 -12.56703 -12.48086 -12.28228 -12.02404 -12.02038 -11.89994 -11.78522 -11.61921 -10.76191 -10.58106 -10.42975 -10.18422 -9.75674 -9.07003 -8.36973 -5.40907 -0.56796 -0.17384 0.87127 1.10158 1.57123 1.60200 1.64936 1.84692 1.90843 2.43327 2.62962 3.14250 3.29848 3.44274 3.56556 3.60408 3.86528 3.88036 3.93319 4.08309 4.14771 4.35947 4.48397 4.51886 4.55285 4.78561 4.83081 4.86232 4.89075 4.95832 5.00425 5.20985 5.29748 5.39491 5.64236 6.27407 6.38750 6.84728 7.07133 7.65085 8.22376 8.93418 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.002989 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.695515 B = 9365.612290 C =10434.910414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.074 4.074 3 Si 1.119 2.881 4 H -0.289 1.289 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.354 4.354 8 H 0.054 0.946 9 N -0.622 5.622 10 C 0.144 3.856 11 C -0.116 4.116 12 C 0.153 3.847 13 H 0.083 0.917 14 N -0.698 5.698 15 C 0.548 3.452 16 O -0.548 6.548 17 C -0.130 4.130 18 C -0.063 4.063 19 C -0.045 4.045 20 Cl -0.047 7.047 21 C -0.059 4.059 22 C -0.100 4.100 23 C -0.001 4.001 24 Cl -0.045 7.045 25 C 0.128 3.872 26 H 0.254 0.746 27 H 0.007 0.993 28 H 0.033 0.967 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.414 0.586 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.030 0.970 36 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.125 -24.690 -12.009 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.270 4.270 3 Si 0.942 3.058 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.483 4.483 8 H 0.072 0.928 9 N -0.349 5.349 10 C 0.018 3.982 11 C -0.155 4.155 12 C 0.047 3.953 13 H 0.101 0.899 14 N -0.351 5.351 15 C 0.336 3.664 16 O -0.426 6.426 17 C -0.134 4.134 18 C -0.082 4.082 19 C -0.072 4.072 20 Cl -0.018 7.018 21 C -0.078 4.078 22 C -0.119 4.119 23 C -0.029 4.029 24 Cl -0.015 7.015 25 C 0.001 3.999 26 H 0.065 0.935 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.253 0.747 32 H 0.178 0.822 33 H 0.198 0.802 34 H 0.193 0.807 35 H 0.048 0.952 36 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 8.639 -23.043 -11.246 27.057 hybrid contribution 0.047 -1.280 0.387 1.338 sum 8.687 -24.323 -10.859 28.017 Atomic orbital electron populations 1.70910 1.07574 1.29370 1.50172 1.27275 0.96489 1.04589 0.98656 0.82824 0.73861 0.71685 0.77416 1.21441 1.20323 1.20170 1.19988 0.99494 0.89745 1.39062 0.92801 1.44802 1.40762 1.01047 1.48317 1.21534 0.90033 0.96197 0.90388 1.23025 1.03345 0.92789 0.96315 1.21625 0.93018 0.85402 0.95249 0.89906 1.45709 1.54038 1.13744 1.21562 1.18445 0.80390 0.82744 0.84860 1.90886 1.49146 1.81864 1.20696 1.19588 1.03386 0.94392 0.96065 1.21311 0.94409 0.99529 0.92972 1.20965 1.00148 0.96364 0.89685 1.98417 1.81458 1.98036 1.23869 1.21601 0.96944 0.96870 0.92391 1.21350 0.95996 0.98584 0.95923 1.21407 0.97784 0.95070 0.88640 1.98438 1.81710 1.97486 1.23880 1.21711 0.97046 0.85119 0.95998 0.93540 0.97473 0.94879 0.88668 0.87734 0.74748 0.82197 0.80215 0.80686 0.95215 0.98420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.57 13.00 21.65 0.28 -58.29 16 2 C -0.07 -4.32 5.09 84.86 0.43 -3.88 16 3 Si 1.12 51.75 30.01 68.60 2.06 53.81 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.35 -20.91 10.00 84.03 0.84 -20.07 16 8 H 0.05 3.20 7.97 -2.91 -0.02 3.18 16 9 N -0.62 -32.84 3.26 -691.59 -2.26 -35.09 16 10 C 0.14 6.66 5.38 86.93 0.47 7.13 16 11 C -0.12 -3.69 6.71 32.06 0.21 -3.48 16 12 C 0.15 5.28 3.23 46.18 0.15 5.43 16 13 H 0.08 3.12 7.70 -2.39 -0.02 3.10 16 14 N -0.70 -18.57 5.08 -439.87 -2.23 -20.81 16 15 C 0.55 15.99 7.76 86.76 0.67 16.66 16 16 O -0.55 -20.38 13.70 -3.91 -0.05 -20.43 16 17 C -0.13 -2.86 5.88 -20.07 -0.12 -2.97 16 18 C -0.06 -0.99 9.32 22.55 0.21 -0.78 16 19 C -0.04 -0.57 6.31 22.29 0.14 -0.43 16 20 Cl -0.05 -0.56 28.95 -2.72 -0.08 -0.64 16 21 C -0.06 -0.58 9.82 22.34 0.22 -0.36 16 22 C -0.10 -1.25 9.82 22.25 0.22 -1.04 16 23 C 0.00 -0.02 6.35 22.60 0.14 0.13 16 24 Cl -0.04 -1.14 26.02 -2.72 -0.07 -1.21 16 25 C 0.13 5.76 6.99 86.73 0.61 6.37 16 26 H 0.25 16.20 6.19 -92.71 -0.57 15.62 16 27 H 0.01 0.38 6.81 -2.39 -0.02 0.36 16 28 H 0.03 1.65 8.07 -2.38 -0.02 1.63 16 29 H 0.09 2.59 8.00 -2.38 -0.02 2.57 16 30 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 31 H 0.41 7.99 6.55 -92.70 -0.61 7.38 16 32 H 0.16 1.93 6.41 -2.91 -0.02 1.91 16 33 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.03 1.32 8.03 -2.38 -0.02 1.30 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -76.35 332.13 2.56 -73.79 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.72 Total: 6.16 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.20 Total: 2.71 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -4.21 Total: -114.19 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.06 Total: 53.81 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.15 Total: -1.85 kcal Total: -76.35 2.56 -73.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016089308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.372 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds