Wall clock time and date at job start Tue Mar 31 2020 14:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99784 * 2 1 4 4 H 1.48500 * 109.47515 * 240.00595 * 3 2 1 5 5 H 1.48510 * 109.46940 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47151 * 120.00122 * 3 2 1 7 7 C 1.38812 * 120.00510 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99813 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99662 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99601 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.91993 * 31.09903 * 10 9 7 12 12 C 1.55159 * 111.00364 * 155.00358 * 10 9 7 13 13 C 1.54320 * 103.10492 * 153.66240 * 12 10 9 14 14 N 1.47023 * 107.27093 * 337.72174 * 13 12 10 15 15 C 1.34782 * 125.64963 * 178.97743 * 14 13 12 16 16 O 1.21557 * 119.99946 * 175.11609 * 15 14 13 17 17 C 1.47767 * 119.99700 * 355.11901 * 15 14 13 18 18 C 1.39616 * 120.15474 * 47.94439 * 17 15 14 19 19 C 1.38016 * 119.85138 * 179.74762 * 18 17 15 20 20 Cl 1.73601 * 119.92033 * 180.28139 * 19 18 17 21 21 C 1.38526 * 120.15700 * 0.53144 * 19 18 17 22 22 C 1.38251 * 120.30455 * 359.74986 * 21 19 18 23 23 C 1.38158 * 120.14200 * 359.96886 * 22 21 19 24 24 Cl 1.73602 * 120.07527 * 180.02562 * 23 22 21 25 25 C 1.47418 * 108.70315 * 358.93616 * 14 13 12 26 26 H 0.96991 * 120.00392 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00121 * 0.02562 * 9 7 2 28 28 H 1.09004 * 110.71877 * 35.21039 * 12 10 9 29 29 H 1.09003 * 110.72128 * 272.11835 * 12 10 9 30 30 H 1.09004 * 109.88407 * 97.13204 * 13 12 10 31 31 H 1.09000 * 109.88675 * 218.29745 * 13 12 10 32 32 H 1.07999 * 120.07093 * 0.03314 * 18 17 15 33 33 H 1.08007 * 119.84640 * 179.71902 * 21 19 18 34 34 H 1.08002 * 119.92626 * 179.97438 * 22 21 19 35 35 H 1.08999 * 110.36803 * 142.96932 * 25 14 13 36 36 H 1.09008 * 110.36818 * 265.18268 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6967 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0005 11 1 3.0079 -3.5577 0.5253 12 6 1.1996 -4.7948 0.6115 13 6 1.7697 -6.0625 -0.0588 14 7 2.4298 -5.6393 -1.3025 15 6 3.0700 -6.4508 -2.1675 16 8 3.5043 -6.0049 -3.2116 17 6 3.2439 -7.8827 -1.8465 18 6 2.1589 -8.6374 -1.3966 19 6 2.3273 -9.9756 -1.1036 20 17 0.9777 -10.9174 -0.5510 21 6 3.5717 -10.5676 -1.2444 22 6 4.6518 -9.8250 -1.6838 23 6 4.4961 -8.4860 -1.9862 24 17 5.8535 -7.5552 -2.5385 25 6 2.2745 -4.1805 -1.4474 26 1 -0.4850 0.8399 0.0004 27 1 0.3558 -2.3880 -0.0005 28 1 0.1478 -4.6638 0.3570 29 1 1.3308 -4.8380 1.6928 30 1 2.4946 -6.5374 0.6024 31 1 0.9612 -6.7573 -0.2860 32 1 1.1891 -8.1762 -1.2826 33 1 3.6987 -11.6141 -1.0093 34 1 5.6194 -10.2927 -1.7910 35 1 3.1757 -3.7439 -1.8778 36 1 1.4087 -3.9510 -2.0687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019699495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:19 Heat of formation + Delta-G solvation = 0.087080 kcal Electronic energy + Delta-G solvation = -22709.137029 eV Core-core repulsion = 19052.490638 eV Total energy + Delta-G solvation = -3656.646391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55166 -38.95447 -37.37458 -36.95296 -36.48853 -34.22829 -32.26433 -31.22417 -30.90854 -29.67271 -27.63358 -24.97993 -23.63736 -23.03522 -22.42190 -20.33169 -19.76637 -17.86802 -17.21296 -17.06035 -16.51050 -16.01337 -15.65298 -15.21318 -14.54448 -14.35856 -14.24448 -13.82548 -13.56780 -13.22365 -13.09825 -12.77169 -12.64807 -12.46430 -12.40741 -12.03564 -11.57736 -11.43427 -11.26917 -11.19134 -11.11235 -10.86877 -10.76153 -10.34335 -10.10876 -9.93568 -9.77162 -9.58008 -9.04884 -9.00721 -8.43679 -7.11861 -5.86581 -3.17663 0.33101 0.55674 1.55981 1.83990 2.54548 2.91972 3.20670 3.40895 3.45633 3.46388 4.11831 4.22116 4.51205 4.53437 4.67937 4.81077 4.87702 5.06366 5.21546 5.30834 5.32906 5.45349 5.53861 5.56914 5.69473 5.71997 5.89326 5.98025 6.08728 6.20753 6.31397 6.44289 6.54785 6.82074 7.61539 7.62869 8.16266 8.30958 9.42946 9.95206 10.30103 11.35269 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017179 B = 0.003055 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.491645 B = 9162.296095 C =10449.705501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.073 0.927 9 N -0.709 5.709 10 C 0.173 3.827 11 H 0.069 0.931 12 C -0.142 4.142 13 C 0.100 3.900 14 N -0.604 5.604 15 C 0.566 3.434 16 O -0.517 6.517 17 C -0.097 4.097 18 C -0.072 4.072 19 C -0.038 4.038 20 Cl -0.056 7.056 21 C -0.083 4.083 22 C -0.103 4.103 23 C 0.007 3.993 24 Cl -0.035 7.035 25 C 0.082 3.918 26 H 0.258 0.742 27 H 0.387 0.613 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.693 -24.941 0.179 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.091 0.909 9 N -0.349 5.349 10 C 0.061 3.939 11 H 0.087 0.913 12 C -0.181 4.181 13 C -0.024 4.024 14 N -0.338 5.338 15 C 0.353 3.647 16 O -0.393 6.393 17 C -0.101 4.101 18 C -0.091 4.091 19 C -0.065 4.065 20 Cl -0.027 7.027 21 C -0.102 4.102 22 C -0.122 4.122 23 C -0.021 4.021 24 Cl -0.005 7.005 25 C -0.043 4.043 26 H 0.068 0.932 27 H 0.222 0.778 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.091 0.909 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.052 -24.522 -0.414 25.261 hybrid contribution 0.048 0.793 -0.043 0.795 sum 6.101 -23.729 -0.457 24.505 Atomic orbital electron populations 1.69643 1.05175 1.26120 1.56772 1.24770 0.95527 0.97865 1.02206 0.86247 0.78579 0.83221 0.78003 1.21052 1.21609 1.21102 1.19223 0.91129 0.83874 1.43952 0.90934 1.42291 1.05821 0.99359 1.87386 1.21386 0.95273 0.86044 0.91234 0.91295 1.22963 1.00927 0.93776 1.00409 1.22203 0.96327 0.98193 0.85644 1.48444 1.53242 1.09693 1.22378 1.17573 0.78950 0.84453 0.83762 1.90843 1.49205 1.75613 1.23651 1.19845 0.92697 0.95300 1.02256 1.21305 0.99438 0.91979 0.96428 1.20851 0.89920 0.92361 1.03327 1.98400 1.44360 1.72085 1.87882 1.21160 0.90232 1.00885 0.97945 1.21005 1.00132 0.91421 0.99641 1.21050 0.89073 0.92665 0.99339 1.98434 1.42022 1.72739 1.87328 1.23595 1.02092 0.76388 1.02263 0.93241 0.77809 0.90329 0.90050 0.91525 0.91721 0.83187 0.83567 0.83304 0.90879 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.72 9.96 -15.06 -0.15 -6.87 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -16.80 5.26 -51.10 -0.27 -17.07 16 10 C 0.17 3.23 3.74 -65.52 -0.24 2.98 16 11 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 12 C -0.14 -2.02 6.58 -24.90 -0.16 -2.19 16 13 C 0.10 1.22 5.66 -3.07 -0.02 1.21 16 14 N -0.60 -9.33 3.33 -171.35 -0.57 -9.90 16 15 C 0.57 9.05 6.93 -12.36 -0.09 8.96 16 16 O -0.52 -10.03 16.09 5.32 0.09 -9.95 16 17 C -0.10 -1.21 5.41 -104.94 -0.57 -1.78 16 18 C -0.07 -0.73 8.30 -39.15 -0.32 -1.06 16 19 C -0.04 -0.32 6.31 -39.56 -0.25 -0.57 16 20 Cl -0.06 -0.45 28.95 -51.86 -1.50 -1.95 16 21 C -0.08 -0.60 9.82 -39.47 -0.39 -0.99 16 22 C -0.10 -0.83 9.82 -39.61 -0.39 -1.22 16 23 C 0.01 0.08 6.34 -39.07 -0.25 -0.17 16 24 Cl -0.03 -0.44 27.14 -51.86 -1.41 -1.85 16 25 C 0.08 1.49 6.61 -2.27 -0.02 1.48 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.39 9.68 7.76 -40.82 -0.32 9.36 16 28 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.66 6.01 -51.93 -0.31 0.35 16 32 H 0.15 1.41 5.99 -52.49 -0.31 1.09 16 33 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 34 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 36 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -30.96 336.29 -9.69 -40.65 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.86 Total: 5.06 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.94 Total: -0.51 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.11 Total: -53.45 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -2.91 Total: -3.80 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.96 -9.69 -40.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019699495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.741 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds