Wall clock time and date at job start Tue Mar 31 2020 14:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99784 * 2 1 4 4 H 1.48500 * 109.47515 * 240.00595 * 3 2 1 5 5 H 1.48510 * 109.46940 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47151 * 120.00122 * 3 2 1 7 7 C 1.38812 * 120.00510 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99813 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99662 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99601 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.91993 * 31.09903 * 10 9 7 12 12 C 1.55159 * 111.00364 * 155.00358 * 10 9 7 13 13 C 1.54320 * 103.10492 * 153.66240 * 12 10 9 14 14 N 1.47023 * 107.27093 * 337.72174 * 13 12 10 15 15 C 1.34782 * 125.64963 * 178.97743 * 14 13 12 16 16 O 1.21557 * 119.99946 * 175.11609 * 15 14 13 17 17 C 1.47767 * 119.99700 * 355.11901 * 15 14 13 18 18 C 1.39616 * 120.15474 * 47.94439 * 17 15 14 19 19 C 1.38016 * 119.85138 * 179.74762 * 18 17 15 20 20 Cl 1.73601 * 119.92033 * 180.28139 * 19 18 17 21 21 C 1.38526 * 120.15700 * 0.53144 * 19 18 17 22 22 C 1.38251 * 120.30455 * 359.74986 * 21 19 18 23 23 C 1.38158 * 120.14200 * 359.96886 * 22 21 19 24 24 Cl 1.73602 * 120.07527 * 180.02562 * 23 22 21 25 25 C 1.47418 * 108.70315 * 358.93616 * 14 13 12 26 26 H 0.96991 * 120.00392 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00121 * 0.02562 * 9 7 2 28 28 H 1.09004 * 110.71877 * 35.21039 * 12 10 9 29 29 H 1.09003 * 110.72128 * 272.11835 * 12 10 9 30 30 H 1.09004 * 109.88407 * 97.13204 * 13 12 10 31 31 H 1.09000 * 109.88675 * 218.29745 * 13 12 10 32 32 H 1.07999 * 120.07093 * 0.03314 * 18 17 15 33 33 H 1.08007 * 119.84640 * 179.71902 * 21 19 18 34 34 H 1.08002 * 119.92626 * 179.97438 * 22 21 19 35 35 H 1.08999 * 110.36803 * 142.96932 * 25 14 13 36 36 H 1.09008 * 110.36818 * 265.18268 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6967 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0005 11 1 3.0079 -3.5577 0.5253 12 6 1.1996 -4.7948 0.6115 13 6 1.7697 -6.0625 -0.0588 14 7 2.4298 -5.6393 -1.3025 15 6 3.0700 -6.4508 -2.1675 16 8 3.5043 -6.0049 -3.2116 17 6 3.2439 -7.8827 -1.8465 18 6 2.1589 -8.6374 -1.3966 19 6 2.3273 -9.9756 -1.1036 20 17 0.9777 -10.9174 -0.5510 21 6 3.5717 -10.5676 -1.2444 22 6 4.6518 -9.8250 -1.6838 23 6 4.4961 -8.4860 -1.9862 24 17 5.8535 -7.5552 -2.5385 25 6 2.2745 -4.1805 -1.4474 26 1 -0.4850 0.8399 0.0004 27 1 0.3558 -2.3880 -0.0005 28 1 0.1478 -4.6638 0.3570 29 1 1.3308 -4.8380 1.6928 30 1 2.4946 -6.5374 0.6024 31 1 0.9612 -6.7573 -0.2860 32 1 1.1891 -8.1762 -1.2826 33 1 3.6987 -11.6141 -1.0093 34 1 5.6194 -10.2927 -1.7910 35 1 3.1757 -3.7439 -1.8778 36 1 1.4087 -3.9510 -2.0687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019699495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:18 Heat of formation + Delta-G solvation = -18.582850 kcal Electronic energy + Delta-G solvation = -22709.946618 eV Core-core repulsion = 19052.490638 eV Total energy + Delta-G solvation = -3657.455980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60386 -39.94777 -38.64061 -37.80300 -37.26031 -35.98898 -33.62336 -32.50871 -31.67564 -31.09101 -29.13036 -26.34819 -25.11044 -23.86393 -23.56677 -21.76466 -20.90399 -19.42834 -18.65444 -17.96489 -17.50896 -17.12572 -16.88316 -16.27542 -16.10582 -15.52344 -15.14653 -15.11813 -14.90039 -14.73618 -14.34961 -13.91022 -13.78221 -13.51523 -13.37638 -13.14049 -13.02567 -12.83943 -12.54442 -12.41568 -12.16151 -12.12888 -12.06814 -12.00748 -11.79645 -11.59259 -11.13699 -10.98428 -10.34510 -9.80419 -9.71398 -9.09261 -7.98278 -5.28323 -0.45696 -0.15180 0.84408 1.04948 1.45849 1.48053 1.49960 1.55633 1.81432 2.30783 2.54509 3.18601 3.34540 3.48279 3.61453 3.83609 3.91910 3.96314 3.99666 4.14351 4.23770 4.31945 4.51280 4.55199 4.59622 4.67256 4.81743 4.86220 4.94189 4.98056 5.14831 5.18745 5.32180 5.34361 5.50822 6.23364 6.39508 6.92644 7.30967 8.01774 8.26201 9.24122 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017179 B = 0.003055 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.491645 B = 9162.296095 C =10449.705501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.066 4.066 3 Si 0.969 3.031 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.721 5.721 10 C 0.167 3.833 11 H 0.066 0.934 12 C -0.129 4.129 13 C 0.103 3.897 14 N -0.605 5.605 15 C 0.564 3.436 16 O -0.563 6.563 17 C -0.117 4.117 18 C -0.071 4.071 19 C -0.037 4.037 20 Cl -0.046 7.046 21 C -0.064 4.064 22 C -0.092 4.092 23 C -0.008 4.008 24 Cl -0.058 7.058 25 C 0.093 3.907 26 H 0.253 0.747 27 H 0.379 0.621 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.156 0.844 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.046 0.954 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.165 -28.073 1.431 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.798 3.202 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.359 5.359 10 C 0.056 3.944 11 H 0.084 0.916 12 C -0.168 4.168 13 C -0.019 4.019 14 N -0.337 5.337 15 C 0.353 3.647 16 O -0.442 6.442 17 C -0.121 4.121 18 C -0.090 4.090 19 C -0.064 4.064 20 Cl -0.017 7.017 21 C -0.083 4.083 22 C -0.111 4.111 23 C -0.036 4.036 24 Cl -0.029 7.029 25 C -0.033 4.033 26 H 0.062 0.938 27 H 0.212 0.788 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.173 0.827 33 H 0.199 0.801 34 H 0.195 0.805 35 H 0.065 0.935 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.546 -27.715 0.865 28.491 hybrid contribution -0.095 1.585 -0.432 1.646 sum 6.452 -26.130 0.433 26.918 Atomic orbital electron populations 1.69780 1.06456 1.26334 1.58801 1.25510 0.96337 1.00930 1.03167 0.85285 0.77323 0.79425 0.78156 1.20879 1.22024 1.20090 1.19575 0.91447 0.85176 1.42014 0.90756 1.42399 1.05546 1.00367 1.87636 1.21531 0.95696 0.85613 0.91543 0.91606 1.22881 0.99992 0.92418 1.01501 1.22394 0.97532 0.97601 0.84354 1.48453 1.53539 1.08224 1.23506 1.18151 0.77738 0.85924 0.82917 1.90807 1.50952 1.76891 1.25552 1.19533 0.94217 0.93170 1.05224 1.21291 0.98816 0.92661 0.96228 1.20934 0.90821 0.91844 1.02798 1.98415 1.44003 1.71565 1.87671 1.21575 0.89003 1.02252 0.95451 1.21325 1.01769 0.89825 0.98145 1.21274 0.88051 0.93795 1.00434 1.98425 1.43056 1.73629 1.87762 1.23121 0.99957 0.78779 1.01429 0.93823 0.78828 0.90417 0.88072 0.89205 0.88838 0.82679 0.80062 0.80502 0.93509 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.64 13.06 21.65 0.28 -57.35 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.25 -13.63 9.96 84.03 0.84 -12.79 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.72 -34.83 5.26 -315.58 -1.66 -36.49 16 10 C 0.17 6.26 3.74 46.55 0.17 6.44 16 11 H 0.07 2.51 8.09 -2.39 -0.02 2.49 16 12 C -0.13 -3.49 6.58 31.78 0.21 -3.28 16 13 C 0.10 2.30 5.66 86.73 0.49 2.79 16 14 N -0.60 -18.57 3.33 -814.31 -2.71 -21.28 16 15 C 0.56 18.13 6.93 86.76 0.60 18.73 16 16 O -0.56 -22.71 16.09 -3.90 -0.06 -22.77 16 17 C -0.12 -2.78 5.41 -20.07 -0.11 -2.89 16 18 C -0.07 -1.25 8.30 22.55 0.19 -1.06 16 19 C -0.04 -0.50 6.31 22.29 0.14 -0.36 16 20 Cl -0.05 -0.56 28.95 -2.72 -0.08 -0.64 16 21 C -0.06 -0.64 9.82 22.34 0.22 -0.42 16 22 C -0.09 -1.17 9.82 22.25 0.22 -0.95 16 23 C -0.01 -0.16 6.34 22.60 0.14 -0.02 16 24 Cl -0.06 -1.47 27.14 -2.72 -0.07 -1.54 16 25 C 0.09 3.54 6.61 87.03 0.58 4.11 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.38 19.40 7.76 -92.71 -0.72 18.68 16 28 H 0.08 2.15 8.00 -2.38 -0.02 2.13 16 29 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.09 1.61 6.01 -2.39 -0.01 1.60 16 32 H 0.16 2.48 5.99 -2.91 -0.02 2.47 16 33 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 36 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -69.89 336.29 2.29 -67.59 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.41 Total: 17.68 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 4.15 Total: 7.02 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -4.09 Total: -115.12 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.15 Total: -2.18 kcal Total: -69.89 2.29 -67.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019699495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.010 kcal (2) G-P(sol) polarization free energy of solvation -69.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds