Wall clock time and date at job start Tue Mar 31 2020 14:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.64192 * 34.29602 * 10 9 7 12 12 C 1.55153 * 110.72593 * 157.43875 * 10 9 7 13 13 C 1.55122 * 101.49049 * 153.73402 * 12 10 9 14 14 N 1.47431 * 104.94074 * 323.22445 * 13 12 10 15 15 C 1.34776 * 125.64850 * 203.97082 * 14 13 12 16 16 O 1.21565 * 120.00028 * 180.02562 * 15 14 13 17 17 C 1.47690 * 119.99956 * 0.03412 * 15 14 13 18 18 C 1.39741 * 120.16183 * 89.72956 * 17 15 14 19 19 Cl 1.73598 * 120.08947 * 359.97438 * 18 17 15 20 20 C 1.38102 * 119.82510 * 179.74481 * 18 17 15 21 21 C 1.38326 * 120.16846 * 0.52996 * 20 18 17 22 22 C 1.38333 * 120.33927 * 359.72142 * 21 20 18 23 23 C 1.38095 * 120.16850 * 0.02590 * 22 21 20 24 24 Cl 1.73601 * 120.08589 * 179.97438 * 23 22 21 25 25 C 1.47029 * 108.70335 * 24.00048 * 14 13 12 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 28 28 H 1.09005 * 111.00455 * 271.94162 * 12 10 9 29 29 H 1.09002 * 111.00146 * 35.78687 * 12 10 9 30 30 H 1.08992 * 110.42121 * 204.29955 * 13 12 10 31 31 H 1.08997 * 110.29788 * 82.08715 * 13 12 10 32 32 H 1.08000 * 119.91899 * 180.27565 * 20 18 17 33 33 H 1.08000 * 119.83654 * 179.70135 * 21 20 18 34 34 H 1.08004 * 119.91369 * 179.97438 * 22 21 20 35 35 H 1.08999 * 109.88087 * 239.52757 * 25 14 13 36 36 H 1.08999 * 109.87848 * 118.35514 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5748 -3.2248 -0.5741 12 6 5.5475 -2.2760 -0.5551 13 6 6.3083 -3.4352 0.1404 14 7 5.7156 -3.5248 1.4873 15 6 6.3170 -4.0409 2.5774 16 8 5.7302 -4.0637 3.6419 17 6 7.6890 -4.5787 2.4789 18 6 8.7879 -3.7432 2.6961 19 17 8.5449 -2.0683 3.0824 20 6 10.0676 -4.2546 2.6073 21 6 10.2634 -5.5875 2.2935 22 6 9.1807 -6.4196 2.0720 23 6 7.8948 -5.9241 2.1622 24 17 6.5376 -6.9700 1.8831 25 6 4.3594 -2.9584 1.4442 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3620 0.0007 28 1 5.5650 -2.3883 -1.6392 29 1 5.9540 -1.3094 -0.2574 30 1 7.3716 -3.2054 0.2084 31 1 6.1563 -4.3673 -0.4037 32 1 10.9179 -3.6113 2.7793 33 1 11.2666 -5.9807 2.2208 34 1 9.3415 -7.4591 1.8270 35 1 4.2858 -2.1198 2.1366 36 1 3.6295 -3.7241 1.7069 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019700776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:22 Heat of formation + Delta-G solvation = 2.569261 kcal Electronic energy + Delta-G solvation = -23154.612418 eV Core-core repulsion = 19498.073662 eV Total energy + Delta-G solvation = -3656.538755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51684 -38.99340 -37.30091 -37.09545 -36.59746 -34.28448 -32.10828 -31.31433 -31.14472 -29.87615 -27.92424 -24.91401 -23.27518 -23.24176 -22.38747 -20.46968 -19.61334 -18.11061 -17.52238 -16.96076 -16.69850 -16.15216 -15.64713 -14.90128 -14.81169 -14.47031 -14.21926 -13.84025 -13.73478 -13.12610 -13.01487 -12.72066 -12.66884 -12.48682 -12.25926 -12.14905 -11.84960 -11.48071 -11.41404 -11.30813 -11.25179 -10.92525 -10.79774 -10.54048 -10.12069 -9.97425 -9.64810 -9.36217 -9.19519 -9.03792 -8.44917 -7.40098 -5.83084 -3.21256 0.41553 0.50280 1.45525 1.87841 2.53797 2.82806 3.07264 3.33749 3.37341 3.42725 4.14968 4.29908 4.52863 4.53634 4.63579 4.77813 4.85955 4.87607 5.04978 5.19754 5.40243 5.49092 5.49236 5.56203 5.62370 5.66639 5.81358 5.84678 5.98808 6.16380 6.22822 6.38687 6.55482 6.74218 7.59396 7.90828 8.15043 8.35430 9.11739 9.83814 10.01435 11.34587 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.003705 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.812206 B = 7555.786326 C = 8385.300539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.093 0.907 9 N -0.736 5.736 10 C 0.178 3.822 11 H 0.077 0.923 12 C -0.142 4.142 13 C 0.102 3.898 14 N -0.598 5.598 15 C 0.573 3.427 16 O -0.519 6.519 17 C -0.098 4.098 18 C -0.001 4.001 19 Cl -0.039 7.039 20 C -0.108 4.108 21 C -0.084 4.084 22 C -0.108 4.108 23 C 0.000 4.000 24 Cl -0.039 7.039 25 C 0.085 3.915 26 H 0.261 0.739 27 H 0.364 0.636 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.074 0.926 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.381 -12.673 1.330 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.186 4.186 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.111 0.889 9 N -0.377 5.377 10 C 0.067 3.933 11 H 0.095 0.905 12 C -0.181 4.181 13 C -0.022 4.022 14 N -0.331 5.331 15 C 0.358 3.642 16 O -0.395 6.395 17 C -0.102 4.102 18 C -0.029 4.029 19 Cl -0.009 7.009 20 C -0.127 4.127 21 C -0.102 4.102 22 C -0.126 4.126 23 C -0.028 4.028 24 Cl -0.010 7.010 25 C -0.040 4.040 26 H 0.071 0.929 27 H 0.198 0.802 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.625 -12.679 1.954 27.766 hybrid contribution 0.460 1.259 0.102 1.344 sum 25.085 -11.421 2.057 27.639 Atomic orbital electron populations 1.69701 1.05132 1.26002 1.56712 1.24675 0.95219 0.97253 1.01480 0.86579 0.79218 0.84983 0.77910 1.20950 1.20249 1.21600 1.19082 0.80271 0.94932 1.44004 0.88926 1.42714 1.04201 1.01520 1.89311 1.21171 0.90495 0.90040 0.91627 0.90540 1.23127 0.96680 0.97774 1.00494 1.22352 0.97582 0.99391 0.82857 1.48422 1.17330 1.58874 1.08454 1.17421 0.84555 0.78539 0.83684 1.90841 1.64801 1.56463 1.27382 1.19781 0.94385 0.92703 1.03371 1.20866 0.93378 0.86934 1.01748 1.98439 1.97109 1.13305 1.92067 1.21145 0.95229 0.96278 1.00003 1.21213 0.99378 0.92443 0.97207 1.21142 0.89879 1.01352 1.00275 1.20843 0.90093 0.90114 1.01721 1.98431 1.43456 1.64976 1.94155 1.23225 0.80499 0.98366 1.01923 0.92901 0.80236 0.89582 0.90676 0.91353 0.91094 0.83661 0.83605 0.83643 0.90721 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.97 55.49 0.78 -28.04 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 3 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.74 -16.70 4.97 -51.65 -0.26 -16.95 16 10 C 0.18 3.23 3.59 -66.10 -0.24 2.99 16 11 H 0.08 1.39 8.11 -51.92 -0.42 0.97 16 12 C -0.14 -1.97 6.72 -24.47 -0.16 -2.14 16 13 C 0.10 1.27 6.68 -2.41 -0.02 1.26 16 14 N -0.60 -9.46 3.33 -171.55 -0.57 -10.03 16 15 C 0.57 9.50 5.39 -12.40 -0.07 9.43 16 16 O -0.52 -10.64 17.43 5.31 0.09 -10.55 16 17 C -0.10 -1.27 4.53 -104.91 -0.48 -1.75 16 18 C 0.00 -0.02 6.35 -39.07 -0.25 -0.26 16 19 Cl -0.04 -0.48 28.04 -51.86 -1.45 -1.93 16 20 C -0.11 -0.82 9.82 -39.60 -0.39 -1.21 16 21 C -0.08 -0.50 10.03 -39.51 -0.40 -0.90 16 22 C -0.11 -0.80 9.82 -39.60 -0.39 -1.19 16 23 C 0.00 0.00 6.35 -39.07 -0.25 -0.25 16 24 Cl -0.04 -0.47 28.04 -51.86 -1.45 -1.92 16 25 C 0.08 1.56 6.63 -3.06 -0.02 1.54 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.36 8.14 5.60 -40.82 -0.23 7.91 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 30 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.15 0.38 8.06 -52.49 -0.42 -0.05 16 34 H 0.15 0.73 8.06 -52.48 -0.42 0.30 16 35 H 0.07 1.55 8.03 -51.93 -0.42 1.14 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -33.53 338.51 -9.39 -42.92 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.01 Total: 3.74 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.90 Total: 0.62 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.05 Total: -55.02 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -2.91 Total: -3.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.53 -9.39 -42.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019700776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.489 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds