Wall clock time and date at job start Tue Mar 31 2020 14:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.64192 * 34.29602 * 10 9 7 12 12 C 1.55153 * 110.72593 * 157.43875 * 10 9 7 13 13 C 1.55122 * 101.49049 * 153.73402 * 12 10 9 14 14 N 1.47431 * 104.94074 * 323.22445 * 13 12 10 15 15 C 1.34776 * 125.64850 * 203.97082 * 14 13 12 16 16 O 1.21565 * 120.00028 * 180.02562 * 15 14 13 17 17 C 1.47690 * 119.99956 * 0.03412 * 15 14 13 18 18 C 1.39741 * 120.16183 * 89.72956 * 17 15 14 19 19 Cl 1.73598 * 120.08947 * 359.97438 * 18 17 15 20 20 C 1.38102 * 119.82510 * 179.74481 * 18 17 15 21 21 C 1.38326 * 120.16846 * 0.52996 * 20 18 17 22 22 C 1.38333 * 120.33927 * 359.72142 * 21 20 18 23 23 C 1.38095 * 120.16850 * 0.02590 * 22 21 20 24 24 Cl 1.73601 * 120.08589 * 179.97438 * 23 22 21 25 25 C 1.47029 * 108.70335 * 24.00048 * 14 13 12 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 28 28 H 1.09005 * 111.00455 * 271.94162 * 12 10 9 29 29 H 1.09002 * 111.00146 * 35.78687 * 12 10 9 30 30 H 1.08992 * 110.42121 * 204.29955 * 13 12 10 31 31 H 1.08997 * 110.29788 * 82.08715 * 13 12 10 32 32 H 1.08000 * 119.91899 * 180.27565 * 20 18 17 33 33 H 1.08000 * 119.83654 * 179.70135 * 21 20 18 34 34 H 1.08004 * 119.91369 * 179.97438 * 22 21 20 35 35 H 1.08999 * 109.88087 * 239.52757 * 25 14 13 36 36 H 1.08999 * 109.87848 * 118.35514 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5748 -3.2248 -0.5741 12 6 5.5475 -2.2760 -0.5551 13 6 6.3083 -3.4352 0.1404 14 7 5.7156 -3.5248 1.4873 15 6 6.3170 -4.0409 2.5774 16 8 5.7302 -4.0637 3.6419 17 6 7.6890 -4.5787 2.4789 18 6 8.7879 -3.7432 2.6961 19 17 8.5449 -2.0683 3.0824 20 6 10.0676 -4.2546 2.6073 21 6 10.2634 -5.5875 2.2935 22 6 9.1807 -6.4196 2.0720 23 6 7.8948 -5.9241 2.1622 24 17 6.5376 -6.9700 1.8831 25 6 4.3594 -2.9584 1.4442 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3620 0.0007 28 1 5.5650 -2.3883 -1.6392 29 1 5.9540 -1.3094 -0.2574 30 1 7.3716 -3.2054 0.2084 31 1 6.1563 -4.3673 -0.4037 32 1 10.9179 -3.6113 2.7793 33 1 11.2666 -5.9807 2.2208 34 1 9.3415 -7.4591 1.8270 35 1 4.2858 -2.1198 2.1366 36 1 3.6295 -3.7241 1.7069 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019700776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:21 Heat of formation + Delta-G solvation = -19.486766 kcal Electronic energy + Delta-G solvation = -23155.568839 eV Core-core repulsion = 19498.073662 eV Total energy + Delta-G solvation = -3657.495177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57750 -39.98851 -38.68466 -37.92477 -37.40715 -36.07616 -33.70659 -32.56997 -31.81119 -31.26795 -29.40394 -26.25033 -24.74745 -23.92392 -23.64255 -21.91412 -20.81569 -19.81139 -18.81328 -17.95219 -17.75143 -17.22383 -16.87768 -16.27964 -15.78448 -15.54887 -15.53938 -15.06276 -14.91558 -14.79745 -14.38608 -13.97416 -13.91454 -13.54581 -13.46442 -13.29510 -13.03016 -12.78450 -12.59386 -12.41127 -12.26618 -12.22728 -12.19241 -12.11420 -11.86608 -11.62690 -11.26858 -11.05299 -10.13450 -9.90260 -9.79936 -9.43111 -8.05296 -5.41371 -0.31347 -0.15472 0.66330 1.09124 1.30931 1.35971 1.40528 1.46918 1.79235 2.28342 2.46052 3.15789 3.26735 3.45465 3.67598 3.68997 3.85053 3.90200 4.08323 4.22913 4.24364 4.26443 4.29712 4.41566 4.57249 4.81271 4.83731 4.92285 4.97620 5.10176 5.10217 5.13237 5.28025 5.47424 5.73816 6.18237 6.35103 6.87936 7.03138 7.76408 7.95474 9.15768 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.003705 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.812206 B = 7555.786326 C = 8385.300539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.059 4.059 3 Si 0.952 3.048 4 H -0.286 1.286 5 H -0.243 1.243 6 H -0.294 1.294 7 C -0.237 4.237 8 H 0.059 0.941 9 N -0.738 5.738 10 C 0.172 3.828 11 H 0.074 0.926 12 C -0.127 4.127 13 C 0.105 3.895 14 N -0.598 5.598 15 C 0.573 3.427 16 O -0.573 6.573 17 C -0.125 4.125 18 C -0.015 4.015 19 Cl -0.061 7.061 20 C -0.097 4.097 21 C -0.059 4.059 22 C -0.097 4.097 23 C -0.013 4.013 24 Cl -0.059 7.059 25 C 0.094 3.906 26 H 0.259 0.741 27 H 0.369 0.631 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.174 0.826 33 H 0.195 0.805 34 H 0.175 0.825 35 H 0.044 0.956 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.512 -13.418 0.096 33.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.251 4.251 3 Si 0.779 3.221 4 H -0.213 1.213 5 H -0.167 1.167 6 H -0.220 1.220 7 C -0.368 4.368 8 H 0.077 0.923 9 N -0.380 5.380 10 C 0.062 3.938 11 H 0.092 0.908 12 C -0.166 4.166 13 C -0.017 4.017 14 N -0.329 5.329 15 C 0.361 3.639 16 O -0.453 6.453 17 C -0.130 4.130 18 C -0.043 4.043 19 Cl -0.032 7.032 20 C -0.116 4.116 21 C -0.077 4.077 22 C -0.115 4.115 23 C -0.041 4.041 24 Cl -0.030 7.030 25 C -0.032 4.032 26 H 0.067 0.933 27 H 0.203 0.797 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.192 0.808 33 H 0.212 0.788 34 H 0.193 0.807 35 H 0.063 0.937 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 29.839 -13.462 0.685 32.743 hybrid contribution -1.045 1.307 0.524 1.754 sum 28.794 -12.155 1.209 31.278 Atomic orbital electron populations 1.69884 1.07207 1.26784 1.59225 1.25500 0.96066 1.01283 1.02259 0.85458 0.79098 0.79704 0.77829 1.21252 1.16743 1.22023 1.19035 0.82411 0.93583 1.41779 0.92299 1.42657 1.02568 1.03437 1.89377 1.21347 0.92882 0.88165 0.91407 0.90760 1.23084 0.92905 0.98492 1.02092 1.22547 0.98498 0.99795 0.80826 1.48461 1.16168 1.58342 1.09969 1.18037 0.85819 0.77370 0.82684 1.90795 1.66608 1.58535 1.29381 1.19509 0.92331 0.94028 1.07115 1.21051 0.94303 0.85834 1.03103 1.98430 1.97291 1.15071 1.92390 1.21565 0.94301 0.97463 0.98260 1.21787 1.00979 0.91133 0.93776 1.21572 0.88464 1.02998 0.98486 1.21037 0.90927 0.89106 1.02997 1.98425 1.44916 1.65315 1.94350 1.22798 0.82198 0.96813 1.01359 0.93259 0.79706 0.86796 0.90453 0.88905 0.89141 0.80833 0.78812 0.80726 0.93715 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.20 13.97 21.65 0.30 -62.89 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.95 45.29 27.74 68.60 1.90 47.19 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.24 -10.13 6.52 99.48 0.65 -9.49 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.24 -13.41 10.45 84.03 0.88 -12.53 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 9 N -0.74 -33.55 4.97 -317.33 -1.58 -35.13 16 10 C 0.17 6.24 3.59 46.18 0.17 6.40 16 11 H 0.07 2.74 8.11 -2.38 -0.02 2.72 16 12 C -0.13 -3.23 6.72 32.06 0.22 -3.02 16 13 C 0.11 2.41 6.68 86.93 0.58 2.99 16 14 N -0.60 -18.98 3.33 -814.93 -2.71 -21.69 16 15 C 0.57 19.31 5.39 86.74 0.47 19.78 16 16 O -0.57 -24.78 17.43 -3.92 -0.07 -24.85 16 17 C -0.13 -3.10 4.53 -20.05 -0.09 -3.19 16 18 C -0.02 -0.31 6.35 22.60 0.14 -0.16 16 19 Cl -0.06 -1.44 28.04 -2.72 -0.08 -1.52 16 20 C -0.10 -1.03 9.82 22.26 0.22 -0.81 16 21 C -0.06 -0.35 10.03 22.31 0.22 -0.13 16 22 C -0.10 -1.00 9.82 22.26 0.22 -0.78 16 23 C -0.01 -0.26 6.35 22.60 0.14 -0.11 16 24 Cl -0.06 -1.35 28.04 -2.72 -0.08 -1.43 16 25 C 0.09 3.63 6.63 86.73 0.57 4.21 16 26 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.37 16.01 5.60 -92.71 -0.52 15.49 16 28 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 29 H 0.08 1.98 8.00 -2.39 -0.02 1.96 16 30 H 0.09 1.75 7.69 -2.39 -0.02 1.73 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.19 -0.57 8.06 -2.91 -0.02 -0.59 16 34 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 35 H 0.04 1.97 8.03 -2.39 -0.02 1.96 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -79.45 338.51 2.45 -77.01 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.54 Total: 13.69 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 4.21 Total: 9.62 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -3.99 Total: -119.71 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.07 Total: -24.85 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.15 Total: -2.95 kcal Total: -79.45 2.45 -77.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019700776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.519 kcal (2) G-P(sol) polarization free energy of solvation -79.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds