Wall clock time and date at job start Tue Mar 31 2020 14:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48499 * 109.47253 * 269.99889 * 3 2 1 5 5 H 1.48500 * 109.46952 * 29.99538 * 3 2 1 6 6 H 1.48497 * 109.47274 * 149.99442 * 3 2 1 7 7 C 1.38815 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.91343 * 23.74950 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00127 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.34779 * 119.99390 * 154.99856 * 15 13 12 17 17 O 1.21557 * 120.00589 * 359.97438 * 16 15 13 18 18 C 1.47774 * 119.99521 * 180.02562 * 16 15 13 19 19 C 1.39619 * 120.14972 * 0.02562 * 18 16 15 20 20 C 1.38013 * 119.84981 * 179.97438 * 19 18 16 21 21 Cl 1.73602 * 119.92099 * 180.02562 * 20 19 18 22 22 C 1.38522 * 120.15695 * 359.97438 * 20 19 18 23 23 C 1.38249 * 120.30807 * 0.02562 * 22 20 19 24 24 C 1.38161 * 120.13974 * 359.73919 * 23 22 20 25 25 Cl 1.73605 * 120.07912 * 180.25268 * 24 23 22 26 26 C 1.53782 * 113.61191 * 252.49800 * 10 9 7 27 27 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99530 * 0.02562 * 9 7 2 29 29 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 30 30 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 31 31 H 0.97001 * 120.00117 * 335.00621 * 15 13 12 32 32 H 1.07994 * 120.07413 * 359.95588 * 19 18 16 33 33 H 1.08007 * 119.84765 * 180.02562 * 22 20 19 34 34 H 1.08002 * 119.93500 * 180.02562 * 23 22 20 35 35 H 1.08997 * 113.61668 * 334.56642 * 26 10 9 36 36 H 1.08994 * 113.61387 * 105.47377 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0657 -3.5646 0.4067 12 6 1.2596 -4.8285 0.5970 13 6 1.8462 -5.6996 -0.5264 14 1 1.1304 -6.4023 -0.9530 15 7 3.1227 -6.3275 -0.1764 16 6 3.5057 -7.4638 -0.7917 17 8 2.7918 -7.9679 -1.6367 18 6 4.7930 -8.0976 -0.4383 19 6 5.6145 -7.5222 0.5330 20 6 6.8153 -8.1197 0.8586 21 17 7.8380 -7.4062 2.0665 22 6 7.2059 -9.2878 0.2248 23 6 6.3974 -9.8631 -0.7379 24 6 5.1906 -9.2783 -1.0701 25 17 4.1736 -10.0056 -2.2745 26 6 2.0001 -4.4027 -1.3419 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 1.5904 -5.1205 1.5938 30 1 0.1793 -4.6993 0.5305 31 1 3.6921 -5.9256 0.4982 32 1 5.3113 -6.6116 1.0280 33 1 8.1464 -9.7513 0.4838 34 1 6.7077 -10.7741 -1.2280 35 1 1.1222 -4.1578 -1.9398 36 1 2.9286 -4.3510 -1.9104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020973281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:06 Heat of formation + Delta-G solvation = 19.127096 kcal Electronic energy + Delta-G solvation = -22247.751012 eV Core-core repulsion = 18591.930258 eV Total energy + Delta-G solvation = -3655.820754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.63625 -39.23471 -37.84238 -37.02910 -36.48503 -34.15507 -32.97212 -31.55394 -30.93505 -29.80801 -25.21275 -25.14298 -24.17592 -23.21219 -22.15514 -21.00879 -19.09802 -18.49280 -17.13764 -16.94211 -16.42175 -15.75652 -15.59008 -15.19178 -14.88458 -14.73685 -14.22776 -14.00823 -13.76376 -13.49184 -12.74746 -12.71459 -12.67349 -12.43260 -12.12105 -11.88783 -11.67805 -11.54367 -11.29939 -11.29204 -10.92454 -10.77918 -10.35599 -10.24045 -9.94262 -9.71830 -9.67430 -9.59158 -9.08982 -8.93380 -8.81451 -7.00803 -5.82044 -3.11217 0.17165 0.47881 1.53599 1.84678 2.45345 2.99446 3.28022 3.40719 3.45934 3.47500 4.07761 4.15508 4.53356 4.55793 4.61042 4.80309 4.97406 5.12955 5.17247 5.21161 5.41793 5.46791 5.48572 5.53822 5.83891 5.87634 5.90000 6.09380 6.22470 6.29334 6.44022 6.59593 6.65480 7.03688 7.45622 7.65313 8.12686 8.36281 9.47670 10.04673 10.38990 11.40248 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.002896 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.650656 B = 9666.507306 C =11242.052724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.073 0.927 12 C -0.159 4.159 13 C 0.116 3.884 14 H 0.099 0.901 15 N -0.699 5.699 16 C 0.553 3.447 17 O -0.512 6.512 18 C -0.112 4.112 19 C -0.066 4.066 20 C -0.042 4.042 21 Cl -0.054 7.054 22 C -0.076 4.076 23 C -0.108 4.108 24 C 0.015 3.985 25 Cl -0.020 7.020 26 C -0.175 4.175 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.398 0.602 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.087 0.913 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.814 -22.492 1.912 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.091 0.909 12 C -0.199 4.199 13 C 0.011 3.989 14 H 0.117 0.883 15 N -0.350 5.350 16 C 0.339 3.661 17 O -0.388 6.388 18 C -0.116 4.116 19 C -0.086 4.086 20 C -0.069 4.069 21 Cl -0.025 7.025 22 C -0.096 4.096 23 C -0.127 4.127 24 C -0.014 4.014 25 Cl 0.010 6.990 26 C -0.218 4.218 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.234 0.766 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.105 0.895 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.370 -22.647 1.322 26.854 hybrid contribution 0.519 1.203 0.334 1.352 sum 14.889 -21.445 1.656 26.159 Atomic orbital electron populations 1.69655 1.05154 1.25820 1.57292 1.24768 0.95521 0.97810 1.02685 0.86193 0.78662 0.83767 0.77573 1.21650 1.21737 1.20711 1.19288 0.91054 0.84214 1.43169 0.91111 1.42396 1.05785 0.99829 1.86956 1.21621 0.95044 0.85246 0.92716 0.90900 1.23871 1.01732 0.97149 0.97144 1.21897 0.84499 0.94146 0.98332 0.88281 1.45628 1.22375 1.25160 1.41867 1.17889 0.85141 0.80994 0.82091 1.90877 1.53788 1.62774 1.31341 1.19830 0.96805 0.96119 0.98857 1.21243 0.92050 0.99707 0.95602 1.20863 0.93698 0.96448 0.95852 1.98412 1.66977 1.83063 1.54017 1.21212 1.00230 0.93574 0.94540 1.21056 0.92388 1.01104 0.98191 1.21146 0.93077 0.93726 0.93413 1.98443 1.66940 1.81102 1.52560 1.24350 1.02105 0.95025 1.00278 0.93397 0.77973 0.91730 0.88880 0.76623 0.83497 0.83512 0.83280 0.89457 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.32 5.40 -52.64 -0.28 -17.60 16 10 C 0.17 3.10 4.36 -67.12 -0.29 2.81 16 11 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 12 C -0.16 -2.43 7.57 -25.92 -0.20 -2.63 16 13 C 0.12 1.70 4.33 -67.02 -0.29 1.41 16 14 H 0.10 1.52 7.47 -51.93 -0.39 1.13 16 15 N -0.70 -8.76 5.22 -53.89 -0.28 -9.04 16 16 C 0.55 7.43 7.76 -12.36 -0.10 7.33 16 17 O -0.51 -8.37 13.57 5.32 0.07 -8.30 16 18 C -0.11 -1.21 5.88 -104.94 -0.62 -1.83 16 19 C -0.07 -0.59 9.32 -39.15 -0.36 -0.95 16 20 C -0.04 -0.33 6.31 -39.56 -0.25 -0.58 16 21 Cl -0.05 -0.42 28.95 -51.86 -1.50 -1.92 16 22 C -0.08 -0.50 9.82 -39.47 -0.39 -0.89 16 23 C -0.11 -0.78 9.82 -39.61 -0.39 -1.17 16 24 C 0.01 0.15 6.35 -39.07 -0.25 -0.10 16 25 Cl -0.02 -0.23 26.02 -51.86 -1.35 -1.58 16 26 C -0.18 -3.01 7.68 -25.82 -0.20 -3.21 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.39 9.99 7.92 -40.82 -0.32 9.66 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 31 H 0.40 4.11 6.74 -40.82 -0.28 3.84 16 32 H 0.15 1.09 6.40 -52.49 -0.34 0.75 16 33 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 34 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -31.55 339.19 -9.93 -41.48 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.82 Total: 8.92 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.58 Total: -7.07 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.16 Total: -53.67 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -2.85 Total: -3.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.55 -9.93 -41.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020973281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.610 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds